void mitk::DoseImageVtkMapper2D::GenerateDataForRenderer( mitk::BaseRenderer *renderer )
{
LocalStorage *localStorage = m_LSH.GetLocalStorage(renderer);
mitk::Image *input = const_cast< mitk::Image * >( this->GetInput() );
mitk::DataNode* datanode = this->GetDataNode();
if ( input == NULL || input->IsInitialized() == false )
{
return;
}
//check if there is a valid worldGeometry
const PlaneGeometry *worldGeometry = renderer->GetCurrentWorldPlaneGeometry();
if( ( worldGeometry == NULL ) || ( !worldGeometry->IsValid() ) || ( !worldGeometry->HasReferenceGeometry() ))
{
return;
}
input->Update();
// early out if there is no intersection of the current rendering geometry
// and the geometry of the image that is to be rendered.
if ( !RenderingGeometryIntersectsImage( worldGeometry, input->GetSlicedGeometry() ) )
{
// set image to NULL, to clear the texture in 3D, because
// the latest image is used there if the plane is out of the geometry
// see bug-13275
localStorage->m_ReslicedImage = NULL;
localStorage->m_Mapper->SetInputData( localStorage->m_EmptyPolyData );
return;
}
//set main input for ExtractSliceFilter
localStorage->m_Reslicer->SetInput(input);
localStorage->m_Reslicer->SetWorldGeometry(worldGeometry);
localStorage->m_Reslicer->SetTimeStep( this->GetTimestep() );
//set the transformation of the image to adapt reslice axis
localStorage->m_Reslicer->SetResliceTransformByGeometry( input->GetTimeGeometry()->GetGeometryForTimeStep( this->GetTimestep() ) );
//is the geometry of the slice based on the input image or the worldgeometry?
bool inPlaneResampleExtentByGeometry = false;
datanode->GetBoolProperty("in plane resample extent by geometry", inPlaneResampleExtentByGeometry, renderer);
localStorage->m_Reslicer->SetInPlaneResampleExtentByGeometry(inPlaneResampleExtentByGeometry);
// Initialize the interpolation mode for resampling; switch to nearest
// neighbor if the input image is too small.
if ( (input->GetDimension() >= 3) && (input->GetDimension(2) > 1) )
{
VtkResliceInterpolationProperty *resliceInterpolationProperty;
datanode->GetProperty(
resliceInterpolationProperty, "reslice interpolation" );
int interpolationMode = VTK_RESLICE_NEAREST;
if ( resliceInterpolationProperty != NULL )
{
interpolationMode = resliceInterpolationProperty->GetInterpolation();
}
switch ( interpolationMode )
{
case VTK_RESLICE_NEAREST:
localStorage->m_Reslicer->SetInterpolationMode(ExtractSliceFilter::RESLICE_NEAREST);
break;
case VTK_RESLICE_LINEAR:
localStorage->m_Reslicer->SetInterpolationMode(ExtractSliceFilter::RESLICE_LINEAR);
break;
case VTK_RESLICE_CUBIC:
localStorage->m_Reslicer->SetInterpolationMode(ExtractSliceFilter::RESLICE_CUBIC);
break;
}
}
else
{
localStorage->m_Reslicer->SetInterpolationMode(ExtractSliceFilter::RESLICE_NEAREST);
}
//set the vtk output property to true, makes sure that no unneeded mitk image convertion
//is done.
localStorage->m_Reslicer->SetVtkOutputRequest(true);
//Thickslicing
int thickSlicesMode = 0;
int thickSlicesNum = 1;
// Thick slices parameters
if( input->GetPixelType().GetNumberOfComponents() == 1 ) // for now only single component are allowed
{
DataNode *dn=renderer->GetCurrentWorldPlaneGeometryNode();
if(dn)
{
ResliceMethodProperty *resliceMethodEnumProperty=0;
if( dn->GetProperty( resliceMethodEnumProperty, "reslice.thickslices" ) && resliceMethodEnumProperty )
thickSlicesMode = resliceMethodEnumProperty->GetValueAsId();
IntProperty *intProperty=0;
if( dn->GetProperty( intProperty, "reslice.thickslices.num" ) && intProperty )
{
thickSlicesNum = intProperty->GetValue();
if(thickSlicesNum < 1) thickSlicesNum=1;
if(thickSlicesNum > 10) thickSlicesNum=10;
}
}
else
{
MITK_WARN << "no associated widget plane data tree node found";
}
}
const PlaneGeometry *planeGeometry = dynamic_cast< const PlaneGeometry * >( worldGeometry );
if(thickSlicesMode > 0)
{
double dataZSpacing = 1.0;
Vector3D normInIndex, normal;
if ( planeGeometry != NULL ){
normal = planeGeometry->GetNormal();
}else{
const mitk::AbstractTransformGeometry* abstractGeometry = dynamic_cast< const AbstractTransformGeometry * >(worldGeometry);
if(abstractGeometry != NULL)
normal = abstractGeometry->GetPlane()->GetNormal();
else
return; //no fitting geometry set
}
normal.Normalize();
input->GetTimeGeometry()->GetGeometryForTimeStep( this->GetTimestep() )->WorldToIndex( normal, normInIndex );
dataZSpacing = 1.0 / normInIndex.GetNorm();
localStorage->m_Reslicer->SetOutputDimensionality( 3 );
localStorage->m_Reslicer->SetOutputSpacingZDirection(dataZSpacing);
localStorage->m_Reslicer->SetOutputExtentZDirection( -thickSlicesNum, 0+thickSlicesNum );
// Do the reslicing. Modified() is called to make sure that the reslicer is
// executed even though the input geometry information did not change; this
// is necessary when the input /em data, but not the /em geometry changes.
localStorage->m_TSFilter->SetThickSliceMode( thickSlicesMode-1 );
localStorage->m_TSFilter->SetInputData( localStorage->m_Reslicer->GetVtkOutput() );
//vtkFilter=>mitkFilter=>vtkFilter update mechanism will fail without calling manually
localStorage->m_Reslicer->Modified();
localStorage->m_Reslicer->Update();
localStorage->m_TSFilter->Modified();
localStorage->m_TSFilter->Update();
localStorage->m_ReslicedImage = localStorage->m_TSFilter->GetOutput();
}
else
{
//this is needed when thick mode was enable bevore. These variable have to be reset to default values
localStorage->m_Reslicer->SetOutputDimensionality( 2 );
localStorage->m_Reslicer->SetOutputSpacingZDirection(1.0);
localStorage->m_Reslicer->SetOutputExtentZDirection( 0, 0 );
localStorage->m_Reslicer->Modified();
//start the pipeline with updating the largest possible, needed if the geometry of the input has changed
localStorage->m_Reslicer->UpdateLargestPossibleRegion();
localStorage->m_ReslicedImage = localStorage->m_Reslicer->GetVtkOutput();
}
// Bounds information for reslicing (only reuqired if reference geometry
// is present)
//this used for generating a vtkPLaneSource with the right size
double sliceBounds[6];
for ( int i = 0; i < 6; ++i )
{
sliceBounds[i] = 0.0;
}
localStorage->m_Reslicer->GetClippedPlaneBounds(sliceBounds);
//get the spacing of the slice
localStorage->m_mmPerPixel = localStorage->m_Reslicer->GetOutputSpacing();
// calculate minimum bounding rect of IMAGE in texture
{
double textureClippingBounds[6];
for ( int i = 0; i < 6; ++i )
{
textureClippingBounds[i] = 0.0;
}
// Calculate the actual bounds of the transformed plane clipped by the
// dataset bounding box; this is required for drawing the texture at the
// correct position during 3D mapping.
mitk::PlaneClipping::CalculateClippedPlaneBounds( input->GetGeometry(), planeGeometry, textureClippingBounds );
textureClippingBounds[0] = static_cast< int >( textureClippingBounds[0] / localStorage->m_mmPerPixel[0] + 0.5 );
textureClippingBounds[1] = static_cast< int >( textureClippingBounds[1] / localStorage->m_mmPerPixel[0] + 0.5 );
textureClippingBounds[2] = static_cast< int >( textureClippingBounds[2] / localStorage->m_mmPerPixel[1] + 0.5 );
textureClippingBounds[3] = static_cast< int >( textureClippingBounds[3] / localStorage->m_mmPerPixel[1] + 0.5 );
//clipping bounds for cutting the image
localStorage->m_LevelWindowFilter->SetClippingBounds(textureClippingBounds);
}
//get the number of scalar components to distinguish between different image types
int numberOfComponents = localStorage->m_ReslicedImage->GetNumberOfScalarComponents();
//get the showIsoLines property
bool showIsoLines = false;
datanode->GetBoolProperty( "dose.showIsoLines", showIsoLines, renderer );
if(showIsoLines) //contour rendering
{
//generate contours/outlines
localStorage->m_OutlinePolyData = CreateOutlinePolyData(renderer);
float binaryOutlineWidth(1.0);
if ( datanode->GetFloatProperty( "outline width", binaryOutlineWidth, renderer ) )
{
if ( localStorage->m_Actors->GetNumberOfPaths() > 1 )
{
float binaryOutlineShadowWidth(1.5);
datanode->GetFloatProperty( "outline shadow width", binaryOutlineShadowWidth, renderer );
dynamic_cast<vtkActor*>(localStorage->m_Actors->GetParts()->GetItemAsObject(0))
->GetProperty()->SetLineWidth( binaryOutlineWidth * binaryOutlineShadowWidth );
}
localStorage->m_Actor->GetProperty()->SetLineWidth( binaryOutlineWidth );
}
}
else
{
localStorage->m_ReslicedImage = NULL;
localStorage->m_Mapper->SetInputData( localStorage->m_EmptyPolyData );
return;
}
this->ApplyOpacity( renderer );
this->ApplyRenderingMode(renderer);
// do not use a VTK lookup table (we do that ourselves in m_LevelWindowFilter)
localStorage->m_Texture->MapColorScalarsThroughLookupTableOff();
int displayedComponent = 0;
if (datanode->GetIntProperty("Image.Displayed Component", displayedComponent, renderer) && numberOfComponents > 1)
{
localStorage->m_VectorComponentExtractor->SetComponents(displayedComponent);
localStorage->m_VectorComponentExtractor->SetInputData(localStorage->m_ReslicedImage);
localStorage->m_LevelWindowFilter->SetInputConnection(localStorage->m_VectorComponentExtractor->GetOutputPort(0));
}
else
{
//connect the input with the levelwindow filter
localStorage->m_LevelWindowFilter->SetInputData(localStorage->m_ReslicedImage);
}
// check for texture interpolation property
bool textureInterpolation = false;
GetDataNode()->GetBoolProperty( "texture interpolation", textureInterpolation, renderer );
//set the interpolation modus according to the property
localStorage->m_Texture->SetInterpolate(textureInterpolation);
// connect the texture with the output of the levelwindow filter
localStorage->m_Texture->SetInputConnection(localStorage->m_LevelWindowFilter->GetOutputPort());
this->TransformActor( renderer );
vtkActor* contourShadowActor = dynamic_cast<vtkActor*> (localStorage->m_Actors->GetParts()->GetItemAsObject(0));
if(showIsoLines) //connect the mapper with the polyData which contains the lines
{
//We need the contour for the binary outline property as actor
localStorage->m_Mapper->SetInputData(localStorage->m_OutlinePolyData);
localStorage->m_Actor->SetTexture(NULL); //no texture for contours
bool binaryOutlineShadow( false );
datanode->GetBoolProperty( "outline binary shadow", binaryOutlineShadow, renderer );
if ( binaryOutlineShadow )
contourShadowActor->SetVisibility( true );
else
contourShadowActor->SetVisibility( false );
}
else
{ //Connect the mapper with the input texture. This is the standard case.
//setup the textured plane
this->GeneratePlane( renderer, sliceBounds );
//set the plane as input for the mapper
localStorage->m_Mapper->SetInputConnection(localStorage->m_Plane->GetOutputPort());
//set the texture for the actor
localStorage->m_Actor->SetTexture(localStorage->m_Texture);
contourShadowActor->SetVisibility( false );
}
// We have been modified => save this for next Update()
localStorage->m_LastUpdateTime.Modified();
}
bool mitk::PointSetDataInteractor::InitMove(StateMachineAction*, InteractionEvent*)
{
GetDataNode()->SetProperty("contourcolor", ColorProperty::New(1.0, 1.0, 1.0));
return true;
}
void mitk::UnstructuredGridMapper2D::Paint( mitk::BaseRenderer* renderer )
{
bool visible = true;
GetDataNode()->GetVisibility(visible, renderer, "visible");
if(!visible) return;
vtkLinearTransform * vtktransform = GetDataNode()->GetVtkTransform();
vtkLinearTransform * inversetransform = vtktransform->GetLinearInverse();
PlaneGeometry::ConstPointer worldGeometry = renderer->GetCurrentWorldPlaneGeometry();
PlaneGeometry::ConstPointer worldPlaneGeometry = dynamic_cast<const PlaneGeometry*>( worldGeometry.GetPointer() );
Point3D point;
Vector3D normal;
if(worldPlaneGeometry.IsNotNull())
{
// set up vtkPlane according to worldGeometry
point=worldPlaneGeometry->GetOrigin();
normal=worldPlaneGeometry->GetNormal(); normal.Normalize();
m_Plane->SetTransform((vtkAbstractTransform*)NULL);
}
else
{
//@FIXME: does not work correctly. Does m_Plane->SetTransform really transforms a "plane plane" into a "curved plane"?
return;
AbstractTransformGeometry::ConstPointer worldAbstractGeometry = dynamic_cast<const AbstractTransformGeometry*>(renderer->GetCurrentWorldPlaneGeometry());
if(worldAbstractGeometry.IsNotNull())
{
// set up vtkPlane according to worldGeometry
point=const_cast<mitk::BoundingBox*>(worldAbstractGeometry->GetParametricBoundingBox())->GetMinimum();
FillVector3D(normal, 0, 0, 1);
m_Plane->SetTransform(worldAbstractGeometry->GetVtkAbstractTransform()->GetInverse());
}
else
return;
}
double vp[ 3 ], vnormal[ 3 ];
vnl2vtk(point.GetVnlVector(), vp);
vnl2vtk(normal.GetVnlVector(), vnormal);
//normally, we would need to transform the surface and cut the transformed surface with the cutter.
//This might be quite slow. Thus, the idea is, to perform an inverse transform of the plane instead.
//@todo It probably does not work for scaling operations yet:scaling operations have to be
//dealed with after the cut is performed by scaling the contour.
inversetransform->TransformPoint( vp, vp );
inversetransform->TransformNormalAtPoint( vp, vnormal, vnormal );
m_Plane->SetOrigin( vp );
m_Plane->SetNormal( vnormal );
// set data into cutter
m_Slicer->SetInputData( m_VtkPointSet );
// m_Cutter->GenerateCutScalarsOff();
// m_Cutter->SetSortByToSortByCell();
// calculate the cut
m_Slicer->Update();
//apply color and opacity read from the PropertyList
ApplyColorAndOpacityProperties( renderer );
// traverse the cut contour
vtkPolyData * contour = m_Slicer->GetOutput();
vtkPoints *vpoints = contour->GetPoints();
vtkCellArray *vlines = contour->GetLines();
vtkCellArray *vpolys = contour->GetPolys();
vtkPointData *vpointdata = contour->GetPointData();
vtkDataArray* vscalars = vpointdata->GetScalars();
vtkCellData *vcelldata = contour->GetCellData();
vtkDataArray* vcellscalars = vcelldata->GetScalars();
const int numberOfLines = contour->GetNumberOfLines();
const int numberOfPolys = contour->GetNumberOfPolys();
const bool useCellData = m_ScalarMode->GetVtkScalarMode() == VTK_SCALAR_MODE_DEFAULT ||
m_ScalarMode->GetVtkScalarMode() == VTK_SCALAR_MODE_USE_CELL_DATA;
const bool usePointData = m_ScalarMode->GetVtkScalarMode() == VTK_SCALAR_MODE_USE_POINT_DATA;
Point3D p;
Point2D p2d;
vlines->InitTraversal();
vpolys->InitTraversal();
mitk::Color outlineColor = m_Color->GetColor();
glLineWidth((float)m_LineWidth->GetValue());
for (int i = 0;i < numberOfLines;++i )
{
vtkIdType *cell(0);
vtkIdType cellSize(0);
vlines->GetNextCell( cellSize, cell );
float rgba[4] = {outlineColor[0], outlineColor[1], outlineColor[2], 1.0f};
if (m_ScalarVisibility->GetValue() && vcellscalars)
{
if ( useCellData )
{ // color each cell according to cell data
double scalar = vcellscalars->GetComponent( i, 0 );
double rgb[3] = { 1.0f, 1.0f, 1.0f };
m_ScalarsToColors->GetColor(scalar, rgb);
rgba[0] = (float)rgb[0];
rgba[1] = (float)rgb[1];
rgba[2] = (float)rgb[2];
rgba[3] = (float)m_ScalarsToOpacity->GetValue(scalar);
}
else if ( usePointData )
{
double scalar = vscalars->GetComponent( i, 0 );
double rgb[3] = { 1.0f, 1.0f, 1.0f };
m_ScalarsToColors->GetColor(scalar, rgb);
rgba[0] = (float)rgb[0];
rgba[1] = (float)rgb[1];
rgba[2] = (float)rgb[2];
rgba[3] = (float)m_ScalarsToOpacity->GetValue(scalar);
}
}
glColor4fv( rgba );
glBegin ( GL_LINE_LOOP );
for ( int j = 0;j < cellSize;++j )
{
vpoints->GetPoint( cell[ j ], vp );
//take transformation via vtktransform into account
vtktransform->TransformPoint( vp, vp );
vtk2itk( vp, p );
//convert 3D point (in mm) to display coordinates (units )
renderer->WorldToDisplay( p, p2d );
//convert display coordinates ( (0,0) is top-left ) in GL coordinates ( (0,0) is bottom-left )
//p2d[1]=toGL-p2d[1];
//add the current vertex to the line
glVertex2f( p2d[0], p2d[1] );
}
glEnd ();
}
bool polyOutline = m_Outline->GetValue();
bool scalarVisibility = m_ScalarVisibility->GetValue();
// cache the transformed points
// a fixed size array is way faster than 'new'
// slices through 3d cells usually do not generated
// polygons with more than 6 vertices
const int maxPolySize = 10;
Point2D* cachedPoints = new Point2D[maxPolySize*numberOfPolys];
glEnable(GL_BLEND);
glBlendFunc(GL_SRC_ALPHA, GL_ONE_MINUS_SRC_ALPHA);
// only draw polygons if there are cell scalars
// or the outline property is set to true
if (scalarVisibility && vcellscalars)
{
glPolygonMode(GL_FRONT_AND_BACK, GL_FILL);
for (int i = 0;i < numberOfPolys;++i )
{
vtkIdType *cell(0);
vtkIdType cellSize(0);
vpolys->GetNextCell( cellSize, cell );
float rgba[4] = {1.0f, 1.0f, 1.0f, 0};
if (scalarVisibility && vcellscalars)
{
if ( useCellData )
{ // color each cell according to cell data
double scalar = vcellscalars->GetComponent( i+numberOfLines, 0 );
double rgb[3] = { 1.0f, 1.0f, 1.0f };
m_ScalarsToColors->GetColor(scalar, rgb);
rgba[0] = (float)rgb[0];
rgba[1] = (float)rgb[1];
rgba[2] = (float)rgb[2];
rgba[3] = (float)m_ScalarsToOpacity->GetValue(scalar);
}
else if ( usePointData )
{
double scalar = vscalars->GetComponent( i, 0 );
double rgb[3] = { 1.0f, 1.0f, 1.0f };
m_ScalarsToColors->GetColor(scalar, rgb);
rgba[0] = (float)rgb[0];
rgba[1] = (float)rgb[1];
rgba[2] = (float)rgb[2];
rgba[3] = (float)m_ScalarsToOpacity->GetValue(scalar);
}
}
glColor4fv( rgba );
glBegin( GL_POLYGON );
for (int j = 0; j < cellSize; ++j)
{
vpoints->GetPoint( cell[ j ], vp );
//take transformation via vtktransform into account
vtktransform->TransformPoint( vp, vp );
vtk2itk( vp, p );
//convert 3D point (in mm) to display coordinates (units )
renderer->WorldToDisplay( p, p2d );
//convert display coordinates ( (0,0) is top-left ) in GL coordinates ( (0,0) is bottom-left )
//p2d[1]=toGL-p2d[1];
cachedPoints[i*10+j][0] = p2d[0];
cachedPoints[i*10+j][1] = p2d[1];
//add the current vertex to the line
glVertex2f( p2d[0], p2d[1] );
}
glEnd();
}
if (polyOutline)
{
vpolys->InitTraversal();
glColor4f(outlineColor[0], outlineColor[1], outlineColor[2], 1.0f);
glPolygonMode(GL_FRONT_AND_BACK, GL_LINE);
for (int i = 0;i < numberOfPolys;++i)
{
vtkIdType *cell(0);
vtkIdType cellSize(0);
vpolys->GetNextCell( cellSize, cell );
glBegin( GL_POLYGON );
//glPolygonOffset(1.0, 1.0);
for (int j = 0; j < cellSize; ++j)
{
//add the current vertex to the line
glVertex2f( cachedPoints[i*10+j][0], cachedPoints[i*10+j][1] );
}
glEnd();
}
}
}
glDisable(GL_BLEND);
delete[] cachedPoints;
}
void mitk::VolumeDataVtkMapper3D::UpdateTransferFunctions( mitk::BaseRenderer *renderer )
{
vtkPiecewiseFunction *opacityTransferFunction = NULL;
vtkPiecewiseFunction *gradientTransferFunction = NULL;
vtkColorTransferFunction *colorTransferFunction = NULL;
mitk::LookupTableProperty::Pointer lookupTableProp;
lookupTableProp = dynamic_cast<mitk::LookupTableProperty*>(this->GetDataNode()->GetProperty("LookupTable"));
mitk::TransferFunctionProperty::Pointer transferFunctionProp = dynamic_cast<mitk::TransferFunctionProperty*>(this->GetDataNode()->GetProperty("TransferFunction"));
if ( transferFunctionProp.IsNotNull() ) {
opacityTransferFunction = transferFunctionProp->GetValue()->GetScalarOpacityFunction();
gradientTransferFunction = transferFunctionProp->GetValue()->GetGradientOpacityFunction();
colorTransferFunction = transferFunctionProp->GetValue()->GetColorTransferFunction();
}
else if (lookupTableProp.IsNotNull() )
{
lookupTableProp->GetLookupTable()->CreateOpacityTransferFunction(opacityTransferFunction);
opacityTransferFunction->ClampingOn();
lookupTableProp->GetLookupTable()->CreateGradientTransferFunction(gradientTransferFunction);
gradientTransferFunction->ClampingOn();
lookupTableProp->GetLookupTable()->CreateColorTransferFunction(colorTransferFunction);
colorTransferFunction->ClampingOn();
}
else
{
opacityTransferFunction = m_DefaultOpacityTransferFunction;
gradientTransferFunction = m_DefaultGradientTransferFunction;
colorTransferFunction = m_DefaultColorTransferFunction;
float rgb[3]={1.0f,1.0f,1.0f};
// check for color prop and use it for rendering if it exists
if(GetDataNode()->GetColor(rgb, renderer, "color"))
{
colorTransferFunction->AddRGBPoint( 0.0, 0.0, 0.0, 0.0 );
colorTransferFunction->AddRGBPoint( 127.5, rgb[0], rgb[1], rgb[2] );
colorTransferFunction->AddRGBPoint( 255.0, rgb[0], rgb[1], rgb[2] );
}
}
if (this->m_Mask)
{
opacityTransferFunction->AddPoint(0xffff, 0.0);
}
m_VolumePropertyLow->SetColor( colorTransferFunction );
m_VolumePropertyLow->SetScalarOpacity( opacityTransferFunction );
m_VolumePropertyLow->SetGradientOpacity( gradientTransferFunction );
m_VolumePropertyLow->SetInterpolationTypeToNearest();
m_VolumePropertyMed->SetColor( colorTransferFunction );
m_VolumePropertyMed->SetScalarOpacity( opacityTransferFunction );
m_VolumePropertyMed->SetGradientOpacity( gradientTransferFunction );
m_VolumePropertyMed->SetInterpolationTypeToNearest();
m_VolumePropertyHigh->SetColor( colorTransferFunction );
m_VolumePropertyHigh->SetScalarOpacity( opacityTransferFunction );
m_VolumePropertyHigh->SetGradientOpacity( gradientTransferFunction );
m_VolumePropertyHigh->SetInterpolationTypeToLinear();
}
void mitk::PointSetVtkMapper3D::GenerateDataForRenderer(mitk::BaseRenderer *renderer)
{
bool visible = true;
GetDataNode()->GetVisibility(visible, renderer, "visible");
if (!visible)
{
m_UnselectedActor->VisibilityOff();
m_SelectedActor->VisibilityOff();
m_ContourActor->VisibilityOff();
return;
}
// create new vtk render objects (e.g. sphere for a point)
SetVtkMapperImmediateModeRendering(m_VtkSelectedPolyDataMapper);
SetVtkMapperImmediateModeRendering(m_VtkUnselectedPolyDataMapper);
BaseLocalStorage *ls = m_LSH.GetLocalStorage(renderer);
bool needGenerateData = ls->IsGenerateDataRequired(renderer, this, GetDataNode());
if (!needGenerateData)
{
mitk::FloatProperty *pointSizeProp =
dynamic_cast<mitk::FloatProperty *>(this->GetDataNode()->GetProperty("pointsize"));
mitk::FloatProperty *contourSizeProp =
dynamic_cast<mitk::FloatProperty *>(this->GetDataNode()->GetProperty("contoursize"));
bool useVertexRendering = false;
this->GetDataNode()->GetBoolProperty("Vertex Rendering", useVertexRendering);
// only create new vtk render objects if property values were changed
if (pointSizeProp && m_PointSize != pointSizeProp->GetValue())
needGenerateData = true;
if (contourSizeProp && m_ContourRadius != contourSizeProp->GetValue())
needGenerateData = true;
// when vertex rendering is enabled the pointset is always
// drawn with opengl, thus we leave needGenerateData always false
if (useVertexRendering && m_VertexRendering != useVertexRendering)
{
needGenerateData = false;
m_VertexRendering = true;
}
else if (!useVertexRendering && m_VertexRendering)
{
m_VertexRendering = false;
needGenerateData = true;
}
}
if (needGenerateData)
{
this->CreateVTKRenderObjects();
ls->UpdateGenerateDataTime();
}
this->ApplyAllProperties(renderer, m_ContourActor);
bool showPoints = true;
this->GetDataNode()->GetBoolProperty("show points", showPoints);
m_UnselectedActor->SetVisibility(showPoints && !m_VertexRendering);
m_SelectedActor->SetVisibility(showPoints && !m_VertexRendering);
if (false && dynamic_cast<mitk::FloatProperty *>(this->GetDataNode()->GetProperty("opacity")) != nullptr)
{
mitk::FloatProperty::Pointer pointOpacity =
dynamic_cast<mitk::FloatProperty *>(this->GetDataNode()->GetProperty("opacity"));
float opacity = pointOpacity->GetValue();
m_ContourActor->GetProperty()->SetOpacity(opacity);
m_UnselectedActor->GetProperty()->SetOpacity(opacity);
m_SelectedActor->GetProperty()->SetOpacity(opacity);
}
bool showContour = false;
this->GetDataNode()->GetBoolProperty("show contour", showContour);
m_ContourActor->SetVisibility(showContour);
// use vertex rendering
if (m_VertexRendering)
{
VertexRendering();
ls->UpdateGenerateDataTime();
}
}
bool mitk::GPUVolumeMapper3D::IsRAYEnabled( mitk::BaseRenderer * renderer )
{
LocalStorage *ls = m_LSH.GetLocalStorage(renderer);
bool value = false;
return ls->m_raySupported && GetDataNode()->GetBoolProperty("volumerendering.useray",value,renderer) && value;
}
const mitk::UnstructuredGrid* mitk::UnstructuredGridVtkMapper3D::GetInput()
{
return static_cast<const mitk::UnstructuredGrid * > ( GetDataNode()->GetData() );
}
const mitk::ContourModelSet* mitk::ContourModelSetMapper3D::GetInput( void )
{
//convient way to get the data from the dataNode
return static_cast< const mitk::ContourModelSet * >( GetDataNode()->GetData() );
}
mitk::FiberBundleX* mitk::FiberBundleXMapper2D::GetInput()
{
return dynamic_cast< mitk::FiberBundleX * > ( GetDataNode()->GetData() );
}
void mitk::PointSetVtkMapper2D::CreateVTKRenderObjects(mitk::BaseRenderer* renderer)
{
LocalStorage *ls = m_LSH.GetLocalStorage(renderer);
unsigned i = 0;
// The vtk text actors need to be removed manually from the propassembly
// since the same vtk text actors are not overwriten within this function,
// but new actors are added to the propassembly each time this function is executed.
// Thus, the actors from the last call must be removed in the beginning.
for(i=0; i< ls->m_VtkTextLabelActors.size(); i++)
{
if(ls->m_PropAssembly->GetParts()->IsItemPresent(ls->m_VtkTextLabelActors.at(i)))
ls->m_PropAssembly->RemovePart(ls->m_VtkTextLabelActors.at(i));
}
for(i=0; i< ls->m_VtkTextDistanceActors.size(); i++)
{
if(ls->m_PropAssembly->GetParts()->IsItemPresent(ls->m_VtkTextDistanceActors.at(i)))
ls->m_PropAssembly->RemovePart(ls->m_VtkTextDistanceActors.at(i));
}
for(i=0; i< ls->m_VtkTextAngleActors.size(); i++)
{
if(ls->m_PropAssembly->GetParts()->IsItemPresent(ls->m_VtkTextAngleActors.at(i)))
ls->m_PropAssembly->RemovePart(ls->m_VtkTextAngleActors.at(i));
}
// initialize polydata here, otherwise we have update problems when
// executing this function again
ls->m_VtkUnselectedPointListPolyData = vtkSmartPointer<vtkPolyData>::New();
ls->m_VtkSelectedPointListPolyData = vtkSmartPointer <vtkPolyData>::New();
ls->m_VtkContourPolyData = vtkSmartPointer<vtkPolyData>::New();
// get input point set and update the PointSet
mitk::PointSet::Pointer input = const_cast<mitk::PointSet*>(this->GetInput());
// only update the input data, if the property tells us to
bool update = true;
this->GetDataNode()->GetBoolProperty("updateDataOnRender", update);
if (update == true)
input->Update();
int timestep = this->GetTimestep();
mitk::PointSet::DataType::Pointer itkPointSet = input->GetPointSet( timestep );
if ( itkPointSet.GetPointer() == NULL)
{
ls->m_PropAssembly->VisibilityOff();
return;
}
//iterator for point set
mitk::PointSet::PointsContainer::Iterator pointsIter = itkPointSet->GetPoints()->Begin();
// PointDataContainer has additional information to each point, e.g. whether
// it is selected or not
mitk::PointSet::PointDataContainer::Iterator pointDataIter;
pointDataIter = itkPointSet->GetPointData()->Begin();
//check if the list for the PointDataContainer is the same size as the PointsContainer.
//If not, then the points were inserted manually and can not be visualized according to the PointData (selected/unselected)
bool pointDataBroken = (itkPointSet->GetPointData()->Size() != itkPointSet->GetPoints()->Size());
if( itkPointSet->GetPointData()->size() == 0 || pointDataBroken)
{
ls->m_PropAssembly->VisibilityOff();
return;
}
ls->m_PropAssembly->VisibilityOn();
// empty point sets, cellarrays, scalars
ls->m_UnselectedPoints->Reset();
ls->m_SelectedPoints->Reset();
ls->m_ContourPoints->Reset();
ls->m_ContourLines->Reset();
ls->m_UnselectedScales->Reset();
ls->m_SelectedScales->Reset();
ls->m_DistancesBetweenPoints->Reset();
ls->m_VtkTextLabelActors.clear();
ls->m_VtkTextDistanceActors.clear();
ls->m_VtkTextAngleActors.clear();
ls->m_UnselectedScales->SetNumberOfComponents(3);
ls->m_SelectedScales->SetNumberOfComponents(3);
int NumberContourPoints = 0;
bool pointsOnSameSideOfPlane = false;
const int text2dDistance = 10;
// initialize points with a random start value
// current point in point set
itk::Point<ScalarType> point = pointsIter->Value();
mitk::Point3D p = point; // currently visited point
mitk::Point3D lastP = point; // last visited point (predecessor in point set of "point")
mitk::Vector3D vec; // p - lastP
mitk::Vector3D lastVec; // lastP - point before lastP
vec.Fill(0.0);
lastVec.Fill(0.0);
mitk::Point3D projected_p = point; // p projected on viewplane
mitk::Point2D pt2d;
pt2d[0] = point[0]; // projected_p in display coordinates
pt2d[1] = point[1];
mitk::Point2D lastPt2d = pt2d; // last projected_p in display coordinates (predecessor in point set of "pt2d")
mitk::Point2D preLastPt2d = pt2d ; // projected_p in display coordinates before lastPt2
mitk::DisplayGeometry::Pointer displayGeometry = renderer->GetDisplayGeometry();
const mitk::PlaneGeometry* geo2D = renderer->GetCurrentWorldPlaneGeometry();
vtkLinearTransform* dataNodeTransform = input->GetGeometry()->GetVtkTransform();
int count = 0;
for (pointsIter=itkPointSet->GetPoints()->Begin();
pointsIter!=itkPointSet->GetPoints()->End();
pointsIter++)
{
lastP = p; // valid for number of points count > 0
preLastPt2d = lastPt2d; // valid only for count > 1
lastPt2d = pt2d; // valid for number of points count > 0
lastVec = vec; // valid only for counter > 1
// get current point in point set
point = pointsIter->Value();
// transform point
{
float vtkp[3];
itk2vtk(point, vtkp);
dataNodeTransform->TransformPoint(vtkp, vtkp);
vtk2itk(vtkp,point);
}
p[0] = point[0];
p[1] = point[1];
p[2] = point[2];
displayGeometry->Project(p, projected_p);
displayGeometry->Map(projected_p, pt2d);
displayGeometry->WorldToDisplay(pt2d, pt2d);
vec = p-lastP; // valid only for counter > 0
// compute distance to current plane
float diff = geo2D->Distance(point);
diff = diff * diff;
//draw markers on slices a certain distance away from the points
//location according to the tolerance threshold (m_DistanceToPlane)
if(diff < m_DistanceToPlane)
{
// is point selected or not?
if (pointDataIter->Value().selected)
{
ls->m_SelectedPoints->InsertNextPoint(point[0],point[1],point[2]);
// point is scaled according to its distance to the plane
ls->m_SelectedScales->InsertNextTuple3(m_Point2DSize - (2*diff),0,0);
}
else
{
ls->m_UnselectedPoints->InsertNextPoint(point[0],point[1],point[2]);
// point is scaled according to its distance to the plane
ls->m_UnselectedScales->InsertNextTuple3(m_Point2DSize - (2*diff),0,0);
}
//---- LABEL -----//
//paint label for each point if available
if (dynamic_cast<mitk::StringProperty *>(this->GetDataNode()->GetProperty("label")) != NULL)
{
const char * pointLabel = dynamic_cast<mitk::StringProperty *>(
this->GetDataNode()->GetProperty("label"))->GetValue();
std::string l = pointLabel;
if (input->GetSize()>1)
{
std::stringstream ss;
ss << pointsIter->Index();
l.append(ss.str());
}
ls->m_VtkTextActor = vtkSmartPointer<vtkTextActor>::New();
ls->m_VtkTextActor->SetPosition(pt2d[0] + text2dDistance, pt2d[1] + text2dDistance);
ls->m_VtkTextActor->SetInput(l.c_str());
ls->m_VtkTextActor->GetTextProperty()->SetOpacity( 100 );
float unselectedColor[4] = {1.0, 1.0, 0.0, 1.0};
//check if there is a color property
GetDataNode()->GetColor(unselectedColor);
ls->m_VtkTextActor->GetTextProperty()->SetColor(unselectedColor[0], unselectedColor[1], unselectedColor[2]);
ls->m_VtkTextLabelActors.push_back(ls->m_VtkTextActor);
}
}
// draw contour, distance text and angle text in render window
// lines between points, which intersect the current plane, are drawn
if( m_ShowContour && count > 0 )
{
ScalarType distance = displayGeometry->GetWorldGeometry()->SignedDistance(point);
ScalarType lastDistance = displayGeometry->GetWorldGeometry()->SignedDistance(lastP);
pointsOnSameSideOfPlane = (distance * lastDistance) > 0.5;
// Points must be on different side of plane in order to draw a contour.
// If "show distant lines" is enabled this condition is disregarded.
if ( !pointsOnSameSideOfPlane || m_ShowDistantLines)
{
vtkSmartPointer<vtkLine> line = vtkSmartPointer<vtkLine>::New();
ls->m_ContourPoints->InsertNextPoint(lastP[0],lastP[1],lastP[2]);
line->GetPointIds()->SetId(0, NumberContourPoints);
NumberContourPoints++;
ls->m_ContourPoints->InsertNextPoint(point[0], point[1], point[2]);
line->GetPointIds()->SetId(1, NumberContourPoints);
NumberContourPoints++;
ls->m_ContourLines->InsertNextCell(line);
if(m_ShowDistances) // calculate and print distance between adjacent points
{
float distancePoints = point.EuclideanDistanceTo(lastP);
std::stringstream buffer;
buffer<<std::fixed <<std::setprecision(m_DistancesDecimalDigits)<<distancePoints<<" mm";
// compute desired display position of text
Vector2D vec2d = pt2d-lastPt2d;
makePerpendicularVector2D(vec2d, vec2d); // text is rendered within text2dDistance perpendicular to current line
Vector2D pos2d = (lastPt2d.GetVectorFromOrigin() + pt2d.GetVectorFromOrigin() ) * 0.5 + vec2d * text2dDistance;
ls->m_VtkTextActor = vtkSmartPointer<vtkTextActor>::New();
ls->m_VtkTextActor->SetPosition(pos2d[0],pos2d[1]);
ls->m_VtkTextActor->SetInput(buffer.str().c_str());
ls->m_VtkTextActor->GetTextProperty()->SetColor(0.0, 1.0, 0.0);
ls->m_VtkTextDistanceActors.push_back(ls->m_VtkTextActor);
}
if(m_ShowAngles && count > 1) // calculate and print angle between connected lines
{
std::stringstream buffer;
buffer << angle(vec.GetVnlVector(), -lastVec.GetVnlVector())*180/vnl_math::pi << "°";
//compute desired display position of text
Vector2D vec2d = pt2d-lastPt2d; // first arm enclosing the angle
vec2d.Normalize();
Vector2D lastVec2d = lastPt2d-preLastPt2d; // second arm enclosing the angle
lastVec2d.Normalize();
vec2d=vec2d-lastVec2d; // vector connecting both arms
vec2d.Normalize();
// middle between two vectors that enclose the angle
Vector2D pos2d = lastPt2d.GetVectorFromOrigin() + vec2d * text2dDistance * text2dDistance;
ls->m_VtkTextActor = vtkSmartPointer<vtkTextActor>::New();
ls->m_VtkTextActor->SetPosition(pos2d[0],pos2d[1]);
ls->m_VtkTextActor->SetInput(buffer.str().c_str());
ls->m_VtkTextActor->GetTextProperty()->SetColor(0.0, 1.0, 0.0);
ls->m_VtkTextAngleActors.push_back(ls->m_VtkTextActor);
}
}
}
if(pointDataIter != itkPointSet->GetPointData()->End())
{
pointDataIter++;
count++;
}
}
// add each single text actor to the assembly
for(i=0; i< ls->m_VtkTextLabelActors.size(); i++)
{
ls->m_PropAssembly->AddPart(ls->m_VtkTextLabelActors.at(i));
}
for(i=0; i< ls->m_VtkTextDistanceActors.size(); i++)
{
ls->m_PropAssembly->AddPart(ls->m_VtkTextDistanceActors.at(i));
}
for(i=0; i< ls->m_VtkTextAngleActors.size(); i++)
{
ls->m_PropAssembly->AddPart(ls->m_VtkTextAngleActors.at(i));
}
//---- CONTOUR -----//
//create lines between the points which intersect the plane
if (m_ShowContour)
{
// draw line between first and last point which is rendered
if(m_CloseContour && NumberContourPoints > 1){
vtkSmartPointer<vtkLine> closingLine = vtkSmartPointer<vtkLine>::New();
closingLine->GetPointIds()->SetId(0, 0); // index of first point
closingLine->GetPointIds()->SetId(1, NumberContourPoints-1); // index of last point
ls->m_ContourLines->InsertNextCell(closingLine);
}
ls->m_VtkContourPolyData->SetPoints(ls->m_ContourPoints);
ls->m_VtkContourPolyData->SetLines(ls->m_ContourLines);
ls->m_VtkContourPolyDataMapper->SetInputData(ls->m_VtkContourPolyData);
ls->m_ContourActor->SetMapper(ls->m_VtkContourPolyDataMapper);
ls->m_ContourActor->GetProperty()->SetLineWidth(m_LineWidth);
ls->m_PropAssembly->AddPart(ls->m_ContourActor);
}
// the point set must be transformed in order to obtain the appropriate glyph orientation
// according to the current view
vtkSmartPointer<vtkTransform> transform = vtkSmartPointer<vtkTransform>::New();
vtkSmartPointer<vtkMatrix4x4> a,b = vtkSmartPointer<vtkMatrix4x4>::New();
a = geo2D->GetVtkTransform()->GetMatrix();
b->DeepCopy( a );
// delete transformation from matrix, only take orientation
b->SetElement(3,3,1);
b->SetElement(2,3,0);
b->SetElement(1,3,0);
b->SetElement(0,3,0);
b->SetElement(3,2,0);
b->SetElement(3,1,0);
b->SetElement(3,0,0);
transform->SetMatrix( b );
//---- UNSELECTED POINTS -----//
// apply properties to glyph
ls->m_UnselectedGlyphSource2D->SetGlyphType(m_IDShapeProperty);
if(m_FillShape)
ls->m_UnselectedGlyphSource2D->FilledOn();
else
ls->m_UnselectedGlyphSource2D->FilledOff();
// apply transform
vtkSmartPointer<vtkTransformFilter> transformFilterU = vtkSmartPointer<vtkTransformFilter>::New();
transformFilterU->SetInputConnection(ls->m_UnselectedGlyphSource2D->GetOutputPort());
transformFilterU->SetTransform(transform);
ls->m_VtkUnselectedPointListPolyData->SetPoints(ls->m_UnselectedPoints);
ls->m_VtkUnselectedPointListPolyData->GetPointData()->SetVectors(ls->m_UnselectedScales);
// apply transform of current plane to glyphs
ls->m_UnselectedGlyph3D->SetSourceConnection(transformFilterU->GetOutputPort());
ls->m_UnselectedGlyph3D->SetInputData(ls->m_VtkUnselectedPointListPolyData);
ls->m_UnselectedGlyph3D->SetScaleModeToScaleByVector();
ls->m_UnselectedGlyph3D->SetVectorModeToUseVector();
ls->m_VtkUnselectedPolyDataMapper->SetInputConnection(ls->m_UnselectedGlyph3D->GetOutputPort());
ls->m_UnselectedActor->SetMapper(ls->m_VtkUnselectedPolyDataMapper);
ls->m_UnselectedActor->GetProperty()->SetLineWidth(m_PointLineWidth);
ls->m_PropAssembly->AddPart(ls->m_UnselectedActor);
//---- SELECTED POINTS -----//
ls->m_SelectedGlyphSource2D->SetGlyphTypeToDiamond();
ls->m_SelectedGlyphSource2D->CrossOn();
ls->m_SelectedGlyphSource2D->FilledOff();
// apply transform
vtkSmartPointer<vtkTransformFilter> transformFilterS = vtkSmartPointer<vtkTransformFilter>::New();
transformFilterS->SetInputConnection(ls->m_SelectedGlyphSource2D->GetOutputPort());
transformFilterS->SetTransform(transform);
ls->m_VtkSelectedPointListPolyData->SetPoints(ls->m_SelectedPoints);
ls->m_VtkSelectedPointListPolyData->GetPointData()->SetVectors(ls->m_SelectedScales);
// apply transform of current plane to glyphs
ls->m_SelectedGlyph3D->SetSourceConnection(transformFilterS->GetOutputPort());
ls->m_SelectedGlyph3D->SetInputData(ls->m_VtkSelectedPointListPolyData);
ls->m_SelectedGlyph3D->SetScaleModeToScaleByVector();
ls->m_SelectedGlyph3D->SetVectorModeToUseVector();
ls->m_VtkSelectedPolyDataMapper->SetInputConnection(ls->m_SelectedGlyph3D->GetOutputPort());
ls->m_SelectedActor->SetMapper(ls->m_VtkSelectedPolyDataMapper);
ls->m_SelectedActor->GetProperty()->SetLineWidth(m_PointLineWidth);
ls->m_PropAssembly->AddPart(ls->m_SelectedActor);
}
void mitk::PointSetVtkMapper2D::GenerateDataForRenderer( mitk::BaseRenderer *renderer )
{
const mitk::DataNode* node = GetDataNode();
if( node == NULL )
return;
LocalStorage *ls = m_LSH.GetLocalStorage(renderer);
// check whether the input data has been changed
bool needGenerateData = ls->IsGenerateDataRequired( renderer, this, GetDataNode() );
// toggle visibility
bool visible = true;
node->GetVisibility(visible, renderer, "visible");
if(!visible)
{
ls->m_UnselectedActor->VisibilityOff();
ls->m_SelectedActor->VisibilityOff();
ls->m_ContourActor->VisibilityOff();
ls->m_PropAssembly->VisibilityOff();
return;
}else{
ls->m_PropAssembly->VisibilityOn();
}
node->GetBoolProperty("show contour", m_ShowContour, renderer);
node->GetBoolProperty("close contour", m_CloseContour, renderer);
node->GetBoolProperty("show points", m_ShowPoints, renderer);
node->GetBoolProperty("show distances", m_ShowDistances, renderer);
node->GetIntProperty("distance decimal digits", m_DistancesDecimalDigits, renderer);
node->GetBoolProperty("show angles", m_ShowAngles, renderer);
node->GetBoolProperty("show distant lines", m_ShowDistantLines, renderer);
node->GetIntProperty("line width", m_LineWidth, renderer);
node->GetIntProperty("point line width", m_PointLineWidth, renderer);
node->GetIntProperty("point 2D size", m_Point2DSize, renderer);
node->GetBoolProperty("Pointset.2D.fill shape", m_FillShape, renderer);
node->GetFloatProperty("Pointset.2D.distance to plane", m_DistanceToPlane, renderer );
mitk::PointSetShapeProperty::Pointer shape = dynamic_cast<mitk::PointSetShapeProperty*>(this->GetDataNode()->GetProperty( "Pointset.2D.shape", renderer ));
if(shape.IsNotNull())
{
m_IDShapeProperty = shape->GetPointSetShape();
}
//check for color props and use it for rendering of selected/unselected points and contour
//due to different params in VTK (double/float) we have to convert
float unselectedColor[4];
double selectedColor[4]={1.0f,0.0f,0.0f,1.0f}; //red
double contourColor[4]={1.0f,0.0f,0.0f,1.0f}; //red
float opacity = 1.0;
GetDataNode()->GetOpacity(opacity, renderer);
// apply color and opacity
if(m_ShowPoints)
{
ls->m_UnselectedActor->VisibilityOn();
ls->m_SelectedActor->VisibilityOn();
//check if there is a color property
GetDataNode()->GetColor(unselectedColor);
//get selected color property
if (dynamic_cast<mitk::ColorProperty*>(this->GetDataNode()->GetPropertyList(renderer)->GetProperty("selectedcolor")) != NULL)
{
mitk::Color tmpColor = dynamic_cast<mitk::ColorProperty *>(this->GetDataNode()->GetPropertyList(renderer)->GetProperty("selectedcolor"))->GetValue();
selectedColor[0] = tmpColor[0];
selectedColor[1] = tmpColor[1];
selectedColor[2] = tmpColor[2];
selectedColor[3] = 1.0f; // alpha value
}
else if (dynamic_cast<mitk::ColorProperty*>(this->GetDataNode()->GetPropertyList(NULL)->GetProperty("selectedcolor")) != NULL)
{
mitk::Color tmpColor = dynamic_cast<mitk::ColorProperty *>(this->GetDataNode()->GetPropertyList(NULL)->GetProperty("selectedcolor"))->GetValue();
selectedColor[0] = tmpColor[0];
selectedColor[1] = tmpColor[1];
selectedColor[2] = tmpColor[2];
selectedColor[3] = 1.0f; // alpha value
}
ls->m_SelectedActor->GetProperty()->SetColor(selectedColor);
ls->m_SelectedActor->GetProperty()->SetOpacity(opacity);
ls->m_UnselectedActor->GetProperty()->SetColor(unselectedColor[0],unselectedColor[1],unselectedColor[2]);
ls->m_UnselectedActor->GetProperty()->SetOpacity(opacity);
}
else
{
ls->m_UnselectedActor->VisibilityOff();
ls-> m_SelectedActor->VisibilityOff();
}
if (m_ShowContour)
{
ls->m_ContourActor->VisibilityOn();
//get contour color property
if (dynamic_cast<mitk::ColorProperty*>(this->GetDataNode()->GetPropertyList(renderer)->GetProperty("contourcolor")) != NULL)
{
mitk::Color tmpColor = dynamic_cast<mitk::ColorProperty *>(this->GetDataNode()->GetPropertyList(renderer)->GetProperty("contourcolor"))->GetValue();
contourColor[0] = tmpColor[0];
contourColor[1] = tmpColor[1];
contourColor[2] = tmpColor[2];
contourColor[3] = 1.0f;
}
else if (dynamic_cast<mitk::ColorProperty*>(this->GetDataNode()->GetPropertyList(NULL)->GetProperty("contourcolor")) != NULL)
{
mitk::Color tmpColor = dynamic_cast<mitk::ColorProperty *>(this->GetDataNode()->GetPropertyList(NULL)->GetProperty("contourcolor"))->GetValue();
contourColor[0] = tmpColor[0];
contourColor[1] = tmpColor[1];
contourColor[2] = tmpColor[2];
contourColor[3] = 1.0f;
}
ls->m_ContourActor->GetProperty()->SetColor(contourColor);
ls->m_ContourActor->GetProperty()->SetOpacity(opacity);
}
else
{
ls->m_ContourActor->VisibilityOff();
}
if(needGenerateData)
{
// create new vtk render objects (e.g. a circle for a point)
this->CreateVTKRenderObjects(renderer);
}
}
void mitk::ConnectomicsNetworkMapper3D::GenerateDataForRenderer(mitk::BaseRenderer* renderer)
{
if( this->GetInput() == NULL )
{
return;
}
bool propertiesHaveChanged = this->PropertiesChanged();
if( this->GetInput()->GetIsModified( ) || propertiesHaveChanged )
{
m_NetworkAssembly->Delete();
m_NetworkAssembly = vtkPropAssembly::New();
// Here is the part where a graph is given and converted to points and connections between points...
std::vector< mitk::ConnectomicsNetwork::NetworkNode > vectorOfNodes = this->GetInput()->GetVectorOfAllNodes();
std::vector< std::pair<
std::pair< mitk::ConnectomicsNetwork::NetworkNode, mitk::ConnectomicsNetwork::NetworkNode >
, mitk::ConnectomicsNetwork::NetworkEdge > > vectorOfEdges = this->GetInput()->GetVectorOfAllEdges();
// Decide on the style of rendering due to property
if( m_ChosenRenderingScheme == connectomicsRenderingMITKScheme )
{
mitk::Point3D tempWorldPoint, tempCNFGeometryPoint;
//////////////////////Prepare coloring and radius////////////
std::vector< double > vectorOfNodeRadiusParameterValues;
vectorOfNodeRadiusParameterValues.resize( vectorOfNodes.size() );
double maxNodeRadiusParameterValue( FillNodeParameterVector( &vectorOfNodeRadiusParameterValues, m_NodeRadiusParameter ) );
std::vector< double > vectorOfNodeColorParameterValues;
vectorOfNodeColorParameterValues.resize( vectorOfNodes.size() );
double maxNodeColorParameterValue( FillNodeParameterVector( &vectorOfNodeColorParameterValues, m_NodeColorParameter ) );
std::vector< double > vectorOfEdgeRadiusParameterValues;
vectorOfEdgeRadiusParameterValues.resize( vectorOfEdges.size() );
double maxEdgeRadiusParameterValue( FillEdgeParameterVector( &vectorOfEdgeRadiusParameterValues, m_EdgeRadiusParameter ) );
std::vector< double > vectorOfEdgeColorParameterValues;
vectorOfEdgeColorParameterValues.resize( vectorOfEdges.size() );
double maxEdgeColorParameterValue( FillEdgeParameterVector( &vectorOfEdgeColorParameterValues, m_EdgeColorParameter ) );
//////////////////////Prepare Filtering//////////////////////
// true will be rendered
std::vector< bool > vectorOfNodeFilterBools( vectorOfNodes.size(), true );
if( m_ChosenNodeFilter == connectomicsRenderingNodeThresholdingFilter )
{
FillNodeFilterBoolVector( &vectorOfNodeFilterBools, m_NodeThresholdParameter );
}
std::vector< bool > vectorOfEdgeFilterBools( vectorOfEdges.size(), true );
if( m_ChosenEdgeFilter == connectomicsRenderingEdgeThresholdFilter )
{
FillEdgeFilterBoolVector( &vectorOfEdgeFilterBools, m_EdgeThresholdParameter );
}
//////////////////////Create Spheres/////////////////////////
for(unsigned int i = 0; i < vectorOfNodes.size(); i++)
{
vtkSmartPointer<vtkSphereSource> sphereSource =
vtkSmartPointer<vtkSphereSource>::New();
for(unsigned int dimension = 0; dimension < 3; dimension++)
{
tempCNFGeometryPoint.SetElement( dimension , vectorOfNodes[i].coordinates[dimension] );
}
GetDataNode()->GetData()->GetGeometry()->IndexToWorld( tempCNFGeometryPoint, tempWorldPoint );
sphereSource->SetCenter( tempWorldPoint[0] , tempWorldPoint[1], tempWorldPoint[2] );
// determine radius
double radiusFactor = vectorOfNodeRadiusParameterValues[i] / maxNodeRadiusParameterValue;
double radius = m_NodeRadiusStart + ( m_NodeRadiusEnd - m_NodeRadiusStart) * radiusFactor;
sphereSource->SetRadius( radius );
vtkSmartPointer<vtkPolyDataMapper> mapper =
vtkSmartPointer<vtkPolyDataMapper>::New();
mapper->SetInputConnection(sphereSource->GetOutputPort());
vtkSmartPointer<vtkActor> actor =
vtkSmartPointer<vtkActor>::New();
actor->SetMapper(mapper);
// determine color
double colorFactor = vectorOfNodeColorParameterValues[i] / maxNodeColorParameterValue;
double redStart = m_NodeColorStart.GetElement( 0 );
double greenStart = m_NodeColorStart.GetElement( 1 );
double blueStart = m_NodeColorStart.GetElement( 2 );
double redEnd = m_NodeColorEnd.GetElement( 0 );
double greenEnd = m_NodeColorEnd.GetElement( 1 );
double blueEnd = m_NodeColorEnd.GetElement( 2 );
double red = redStart + ( redEnd - redStart ) * colorFactor;
double green = greenStart + ( greenEnd - greenStart ) * colorFactor;
double blue = blueStart + ( blueEnd - blueStart ) * colorFactor;
actor->GetProperty()->SetColor( red, green, blue);
if( vectorOfNodeFilterBools[i] )
{
m_NetworkAssembly->AddPart(actor);
}
}
//////////////////////Create Tubes/////////////////////////
for(unsigned int i = 0; i < vectorOfEdges.size(); i++)
{
vtkSmartPointer<vtkLineSource> lineSource =
vtkSmartPointer<vtkLineSource>::New();
for(unsigned int dimension = 0; dimension < 3; dimension++)
{
tempCNFGeometryPoint[ dimension ] = vectorOfEdges[i].first.first.coordinates[dimension];
}
GetDataNode()->GetData()->GetGeometry()->IndexToWorld( tempCNFGeometryPoint, tempWorldPoint );
lineSource->SetPoint1(tempWorldPoint[0], tempWorldPoint[1],tempWorldPoint[2] );
for(unsigned int dimension = 0; dimension < 3; dimension++)
{
tempCNFGeometryPoint[ dimension ] = vectorOfEdges[i].first.second.coordinates[dimension];
}
GetDataNode()->GetData()->GetGeometry()->IndexToWorld( tempCNFGeometryPoint, tempWorldPoint );
lineSource->SetPoint2(tempWorldPoint[0], tempWorldPoint[1], tempWorldPoint[2] );
vtkSmartPointer<vtkTubeFilter> tubes = vtkSmartPointer<vtkTubeFilter>::New();
tubes->SetInputConnection( lineSource->GetOutputPort() );
tubes->SetNumberOfSides( 12 );
// determine radius
double radiusFactor = vectorOfEdgeRadiusParameterValues[i] / maxEdgeRadiusParameterValue;
double radius = m_EdgeRadiusStart + ( m_EdgeRadiusEnd - m_EdgeRadiusStart) * radiusFactor;
tubes->SetRadius( radius );
// originally we used a logarithmic scaling,
// double radiusFactor = 1.0 + ((double) vectorOfEdges[i].second.weight) / 10.0 ;
// tubes->SetRadius( std::log10( radiusFactor ) );
vtkSmartPointer<vtkPolyDataMapper> mapper2 =
vtkSmartPointer<vtkPolyDataMapper>::New();
mapper2->SetInputConnection( tubes->GetOutputPort() );
vtkSmartPointer<vtkActor> actor =
vtkSmartPointer<vtkActor>::New();
actor->SetMapper(mapper2);
// determine color
double colorFactor = vectorOfEdgeColorParameterValues[i] / maxEdgeColorParameterValue;
double redStart = m_EdgeColorStart.GetElement( 0 );
double greenStart = m_EdgeColorStart.GetElement( 1 );
double blueStart = m_EdgeColorStart.GetElement( 2 );
double redEnd = m_EdgeColorEnd.GetElement( 0 );
double greenEnd = m_EdgeColorEnd.GetElement( 1 );
double blueEnd = m_EdgeColorEnd.GetElement( 2 );
double red = redStart + ( redEnd - redStart ) * colorFactor;
double green = greenStart + ( greenEnd - greenStart ) * colorFactor;
double blue = blueStart + ( blueEnd - blueStart ) * colorFactor;
actor->GetProperty()->SetColor( red, green, blue);
if( vectorOfEdgeFilterBools[i] )
{
m_NetworkAssembly->AddPart(actor);
}
}
}
else if( m_ChosenRenderingScheme == connectomicsRenderingVTKScheme )
{
vtkSmartPointer<vtkMutableUndirectedGraph> graph =
vtkSmartPointer<vtkMutableUndirectedGraph>::New();
std::vector< vtkIdType > networkToVTKvector;
networkToVTKvector.resize(vectorOfNodes.size());
for(unsigned int i = 0; i < vectorOfNodes.size(); i++)
{
networkToVTKvector[vectorOfNodes[i].id] = graph->AddVertex();
}
for(unsigned int i = 0; i < vectorOfEdges.size(); i++)
{
graph->AddEdge(networkToVTKvector[vectorOfEdges[i].first.first.id], networkToVTKvector[vectorOfEdges[i].first.second.id]);
}
vtkSmartPointer<vtkPoints> points =
vtkSmartPointer<vtkPoints>::New();
for(unsigned int i = 0; i < vectorOfNodes.size(); i++)
{
double x = vectorOfNodes[i].coordinates[0];
double y = vectorOfNodes[i].coordinates[1];
double z = vectorOfNodes[i].coordinates[2];
points->InsertNextPoint( x, y, z);
}
graph->SetPoints(points);
vtkGraphLayout* layout = vtkGraphLayout::New();
layout->SetInputData(graph);
vtkPassThroughLayoutStrategy* ptls = vtkPassThroughLayoutStrategy::New();
layout->SetLayoutStrategy( ptls );
vtkGraphToPolyData* graphToPoly = vtkGraphToPolyData::New();
graphToPoly->SetInputConnection(layout->GetOutputPort());
// Create the standard VTK polydata mapper and actor
// for the connections (edges) in the tree.
vtkPolyDataMapper* edgeMapper = vtkPolyDataMapper::New();
edgeMapper->SetInputConnection(graphToPoly->GetOutputPort());
vtkActor* edgeActor = vtkActor::New();
edgeActor->SetMapper(edgeMapper);
edgeActor->GetProperty()->SetColor(0.0, 0.5, 1.0);
// Glyph the points of the tree polydata to create
// VTK_VERTEX cells at each vertex in the tree.
vtkGlyph3D* vertGlyph = vtkGlyph3D::New();
vertGlyph->SetInputConnection(0, graphToPoly->GetOutputPort());
vtkGlyphSource2D* glyphSource = vtkGlyphSource2D::New();
glyphSource->SetGlyphTypeToVertex();
vertGlyph->SetInputConnection(1, glyphSource->GetOutputPort());
// Create a mapper for the vertices, and tell the mapper
// to use the specified color array.
vtkPolyDataMapper* vertMapper = vtkPolyDataMapper::New();
vertMapper->SetInputConnection(vertGlyph->GetOutputPort());
/*if (colorArray)
{
vertMapper->SetScalarModeToUsePointFieldData();
vertMapper->SelectColorArray(colorArray);
vertMapper->SetScalarRange(colorRange);
}*/
// Create an actor for the vertices. Move the actor forward
// in the z direction so it is drawn on top of the edge actor.
vtkActor* vertActor = vtkActor::New();
vertActor->SetMapper(vertMapper);
vertActor->GetProperty()->SetPointSize(5);
vertActor->SetPosition(0, 0, 0.001);
m_NetworkAssembly->AddPart(edgeActor);
m_NetworkAssembly->AddPart(vertActor);
}
(static_cast<mitk::ConnectomicsNetwork * > ( GetDataNode()->GetData() ) )->SetIsModified( false );
}
}
void mitk::PointSetVtkMapper3D::GenerateDataForRenderer( mitk::BaseRenderer *renderer )
{
// create new vtk render objects (e.g. sphere for a point)
this->CreateVTKRenderObjects();
SetVtkMapperImmediateModeRendering(m_VtkSelectedPolyDataMapper);
SetVtkMapperImmediateModeRendering(m_VtkUnselectedPolyDataMapper);
mitk::FloatProperty::Pointer pointSizeProp = dynamic_cast<mitk::FloatProperty *>(this->GetDataNode()->GetProperty("pointsize"));
mitk::FloatProperty::Pointer contourSizeProp = dynamic_cast<mitk::FloatProperty *>(this->GetDataNode()->GetProperty("contoursize"));
// only create new vtk render objects if property values were changed
if ( pointSizeProp.IsNotNull() && contourSizeProp.IsNotNull() )
{
if (m_PointSize!=pointSizeProp->GetValue() || m_ContourRadius!= contourSizeProp->GetValue())
{
this->CreateVTKRenderObjects();
}
}
this->ApplyAllProperties(renderer, m_ContourActor);
bool visible = true;
GetDataNode()->GetVisibility(visible, renderer, "visible");
if(!visible)
{
m_UnselectedActor->VisibilityOff();
m_SelectedActor->VisibilityOff();
m_ContourActor->VisibilityOff();
return;
}
bool showPoints = true;
this->GetDataNode()->GetBoolProperty("show points", showPoints);
if(showPoints)
{
m_UnselectedActor->VisibilityOn();
m_SelectedActor->VisibilityOn();
}
else
{
m_UnselectedActor->VisibilityOff();
m_SelectedActor->VisibilityOff();
}
if(dynamic_cast<mitk::FloatProperty *>(this->GetDataNode()->GetProperty("opacity")) != NULL)
{
mitk::FloatProperty::Pointer pointOpacity =dynamic_cast<mitk::FloatProperty *>(this->GetDataNode()->GetProperty("opacity"));
float opacity = pointOpacity->GetValue();
m_ContourActor->GetProperty()->SetOpacity(opacity);
m_UnselectedActor->GetProperty()->SetOpacity(opacity);
m_SelectedActor->GetProperty()->SetOpacity(opacity);
}
bool makeContour = false;
this->GetDataNode()->GetBoolProperty("show contour", makeContour);
if (makeContour)
{
m_ContourActor->VisibilityOn();
}
else
{
m_ContourActor->VisibilityOff();
}
}
vtkSmartPointer<vtkPolyData> mitk::DoseImageVtkMapper2D::CreateOutlinePolyData(mitk::BaseRenderer* renderer )
{
vtkSmartPointer<vtkPoints> points = vtkSmartPointer<vtkPoints>::New(); //the points to draw
vtkSmartPointer<vtkCellArray> lines = vtkSmartPointer<vtkCellArray>::New(); //the lines to connect the points
vtkSmartPointer<vtkUnsignedCharArray> colors = vtkSmartPointer<vtkUnsignedCharArray>::New();
colors->SetNumberOfComponents(3);
colors->SetName("Colors");
float pref;
this->GetDataNode()->GetFloatProperty(mitk::RTConstants::REFERENCE_DOSE_PROPERTY_NAME.c_str(),pref);
mitk::IsoDoseLevelSetProperty::Pointer propIsoSet = dynamic_cast<mitk::IsoDoseLevelSetProperty* >(GetDataNode()->GetProperty(mitk::RTConstants::DOSE_ISO_LEVELS_PROPERTY_NAME.c_str()));
mitk::IsoDoseLevelSet::Pointer isoDoseLevelSet = propIsoSet->GetValue();
for(mitk::IsoDoseLevelSet::ConstIterator doseIT = isoDoseLevelSet->Begin(); doseIT!=isoDoseLevelSet->End();++doseIT)
{
if(doseIT->GetVisibleIsoLine())
{
this->CreateLevelOutline(renderer, &(doseIT.Value()), pref, points, lines, colors);
}//end of if visible dose value
}//end of loop over all does values
mitk::IsoDoseLevelVectorProperty::Pointer propfreeIsoVec = dynamic_cast<mitk::IsoDoseLevelVectorProperty* >(GetDataNode()->GetProperty(mitk::RTConstants::DOSE_FREE_ISO_VALUES_PROPERTY_NAME.c_str()));
mitk::IsoDoseLevelVector::Pointer frereIsoDoseLevelVec = propfreeIsoVec->GetValue();
for(mitk::IsoDoseLevelVector::ConstIterator freeDoseIT = frereIsoDoseLevelVec->Begin(); freeDoseIT!=frereIsoDoseLevelVec->End();++freeDoseIT)
{
if(freeDoseIT->Value()->GetVisibleIsoLine())
{
this->CreateLevelOutline(renderer, freeDoseIT->Value(), pref, points, lines, colors);
}//end of if visible dose value
}//end of loop over all does values
// Create a polydata to store everything in
vtkSmartPointer<vtkPolyData> polyData = vtkSmartPointer<vtkPolyData>::New();
// Add the points to the dataset
polyData->SetPoints(points);
// Add the lines to the dataset
polyData->SetLines(lines);
polyData->GetCellData()->SetScalars(colors);
return polyData;
}
void mitk::GPUVolumeMapper3D::UpdateTransferFunctions( mitk::BaseRenderer * renderer )
{
LocalStorage *ls = m_LSH.GetLocalStorage(renderer);
vtkPiecewiseFunction *opacityTransferFunction = m_DefaultOpacityTransferFunction;
vtkPiecewiseFunction *gradientTransferFunction = m_DefaultGradientTransferFunction;
vtkColorTransferFunction *colorTransferFunction = m_DefaultColorTransferFunction;
bool isBinary = false;
GetDataNode()->GetBoolProperty("binary", isBinary, renderer);
if(isBinary)
{
opacityTransferFunction = m_BinaryOpacityTransferFunction;
gradientTransferFunction = m_BinaryGradientTransferFunction;
colorTransferFunction = m_BinaryColorTransferFunction;
colorTransferFunction->RemoveAllPoints();
float rgb[3];
if( !GetDataNode()->GetColor( rgb,renderer ) )
rgb[0]=rgb[1]=rgb[2]=1;
colorTransferFunction->AddRGBPoint( 0,rgb[0],rgb[1],rgb[2] );
colorTransferFunction->Modified();
}
else
{
mitk::TransferFunctionProperty *transferFunctionProp =
dynamic_cast<mitk::TransferFunctionProperty*>(this->GetDataNode()->GetProperty("TransferFunction",renderer));
if( transferFunctionProp )
{
opacityTransferFunction = transferFunctionProp->GetValue()->GetScalarOpacityFunction();
gradientTransferFunction = transferFunctionProp->GetValue()->GetGradientOpacityFunction();
colorTransferFunction = transferFunctionProp->GetValue()->GetColorTransferFunction();
}
}
if(ls->m_gpuInitialized)
{
ls->m_VolumePropertyGPU->SetColor( colorTransferFunction );
ls->m_VolumePropertyGPU->SetScalarOpacity( opacityTransferFunction );
ls->m_VolumePropertyGPU->SetGradientOpacity( gradientTransferFunction );
}
// Only with VTK 5.6 or above
#if ((VTK_MAJOR_VERSION > 5) || ((VTK_MAJOR_VERSION==5) && (VTK_MINOR_VERSION>=6) ))
if(ls->m_rayInitialized)
{
ls->m_VolumePropertyRAY->SetColor( colorTransferFunction );
ls->m_VolumePropertyRAY->SetScalarOpacity( opacityTransferFunction );
ls->m_VolumePropertyRAY->SetGradientOpacity( gradientTransferFunction );
}
#endif
if(ls->m_cpuInitialized)
{
ls->m_VolumePropertyCPU->SetColor( colorTransferFunction );
ls->m_VolumePropertyCPU->SetScalarOpacity( opacityTransferFunction );
ls->m_VolumePropertyCPU->SetGradientOpacity( gradientTransferFunction );
}
}
bool mitk::PlanarFigureInteractor::CheckFigureFinished( const InteractionEvent* /*interactionEvent*/ )
{
mitk::PlanarFigure *planarFigure = dynamic_cast<mitk::PlanarFigure *>( GetDataNode()->GetData() );
return ( planarFigure->GetNumberOfControlPoints() >= planarFigure->GetMaximumNumberOfControlPoints() );
}
bool mitk::GPUVolumeMapper3D::IsMIPEnabled( mitk::BaseRenderer * renderer )
{
bool value = false;
return GetDataNode()->GetBoolProperty("volumerendering.usemip",value,renderer) && value;
}
bool mitk::PlanarFigureInteractor::AddPoint(StateMachineAction*, InteractionEvent* interactionEvent)
{
mitk::InteractionPositionEvent* positionEvent = dynamic_cast<mitk::InteractionPositionEvent*>( interactionEvent );
if ( positionEvent == NULL )
return false;
bool selected = false;
bool isEditable = true;
GetDataNode()->GetBoolProperty("selected", selected);
GetDataNode()->GetBoolProperty( "planarfigure.iseditable", isEditable );
if ( !selected || !isEditable )
{
return false;
}
mitk::PlanarFigure *planarFigure = dynamic_cast<mitk::PlanarFigure *>(
GetDataNode()->GetData() );
mitk::PlaneGeometry *planarFigureGeometry =
dynamic_cast< PlaneGeometry * >( planarFigure->GetGeometry( 0 ) );
mitk::AbstractTransformGeometry *abstractTransformGeometry =
dynamic_cast< AbstractTransformGeometry * >( planarFigure->GetGeometry( 0 ) );
if ( abstractTransformGeometry != NULL)
return false;
// If the planarFigure already has reached the maximum number
if ( planarFigure->GetNumberOfControlPoints() >= planarFigure->GetMaximumNumberOfControlPoints() )
{
return false;
}
// Extract point in 2D world coordinates (relative to PlaneGeometry of
// PlanarFigure)
Point2D point2D, projectedPoint;
if ( !this->TransformPositionEventToPoint2D( positionEvent, planarFigureGeometry, point2D ) )
{
return false;
}
// TODO: check segment of polyline we clicked in
int nextIndex = -1;
// We only need to check which position to insert the control point
// when interacting with a PlanarPolygon. For all other types
// new control points will always be appended
/*
* Added check for "initiallyplaced" due to bug 13097:
*
* There are two possible cases in which a point can be inserted into a PlanarPolygon:
*
* 1. The figure is currently drawn -> the point will be appended at the end of the figure
* 2. A point is inserted at a userdefined position after the initial placement of the figure is finished
*
* In the second case we need to determine the proper insertion index. In the first case the index always has
* to be -1 so that the point is appended to the end.
*
* These changes are necessary because of a mac os x specific issue: If a users draws a PlanarPolygon then the
* next point to be added moves according to the mouse position. If then the user left clicks in order to add
* a point one would assume the last move position is identical to the left click position. This is actually the
* case for windows and linux but somehow NOT for mac. Because of the insertion logic of a new point in the
* PlanarFigure then for mac the wrong current selected point is determined.
*
* With this check here this problem can be avoided. However a redesign of the insertion logic should be considered
*/
bool isFigureFinished = false;
planarFigure->GetPropertyList()->GetBoolProperty( "initiallyplaced", isFigureFinished );
mitk::BaseRenderer *renderer = interactionEvent->GetSender();
const PlaneGeometry *projectionPlane = renderer->GetCurrentWorldPlaneGeometry();
if ( dynamic_cast<mitk::PlanarPolygon*>( planarFigure ) && isFigureFinished)
{
nextIndex = this->IsPositionOverFigure(
positionEvent,
planarFigure,
planarFigureGeometry,
projectionPlane,
renderer->GetDisplayGeometry(),
projectedPoint
);
}
// Add point as new control point
renderer->GetDisplayGeometry()->DisplayToWorld( projectedPoint, projectedPoint );
if ( planarFigure->IsPreviewControlPointVisible() )
{
point2D = planarFigure->GetPreviewControlPoint();
}
planarFigure->AddControlPoint( point2D, nextIndex );
if ( planarFigure->IsPreviewControlPointVisible() )
{
planarFigure->SelectControlPoint( nextIndex );
planarFigure->ResetPreviewContolPoint();
}
// Re-evaluate features
planarFigure->EvaluateFeatures();
//this->LogPrintPlanarFigureQuantities( planarFigure );
// Update rendered scene
renderer->GetRenderingManager()->RequestUpdateAll();
return true;
}
void mitk::UnstructuredGridVtkMapper3D::GenerateDataForRenderer(mitk::BaseRenderer* renderer)
{
mitk::DataNode::ConstPointer node = this->GetDataNode();
BaseLocalStorage *ls = m_LSH.GetLocalStorage(renderer);
bool needGenerateData = ls->IsGenerateDataRequired( renderer, this, GetDataNode() );
if(needGenerateData)
{
ls->UpdateGenerateDataTime();
m_Assembly->VisibilityOn();
m_ActorWireframe->GetProperty()->SetAmbient(1.0);
m_ActorWireframe->GetProperty()->SetDiffuse(0.0);
m_ActorWireframe->GetProperty()->SetSpecular(0.0);
mitk::TransferFunctionProperty::Pointer transferFuncProp;
if (node->GetProperty(transferFuncProp, "TransferFunction"))
{
mitk::TransferFunction::Pointer transferFunction = transferFuncProp->GetValue();
if (transferFunction->GetColorTransferFunction()->GetSize() < 2)
{
mitk::UnstructuredGrid::Pointer input = const_cast< mitk::UnstructuredGrid* >(this->GetInput());
if (input.IsNull()) return;
vtkUnstructuredGrid * grid = input->GetVtkUnstructuredGrid(this->GetTimestep());
if (grid == 0) return;
double* scalarRange = grid->GetScalarRange();
vtkColorTransferFunction* colorFunc = transferFunction->GetColorTransferFunction();
colorFunc->RemoveAllPoints();
colorFunc->AddRGBPoint(scalarRange[0], 1, 0, 0);
colorFunc->AddRGBPoint((scalarRange[0] + scalarRange[1])/2.0, 0, 1, 0);
colorFunc->AddRGBPoint(scalarRange[1], 0, 0, 1);
}
}
}
bool visible = true;
GetDataNode()->GetVisibility(visible, renderer, "visible");
if(!visible)
{
m_Assembly->VisibilityOff();
return;
}
//
// get the TimeGeometry of the input object
//
mitk::UnstructuredGrid::Pointer input = const_cast< mitk::UnstructuredGrid* >( this->GetInput() );
//
// set the input-object at time t for the mapper
//
vtkUnstructuredGrid * grid = input->GetVtkUnstructuredGrid( this->GetTimestep() );
if(grid == 0)
{
m_Assembly->VisibilityOff();
return;
}
m_Assembly->VisibilityOn();
m_VtkTriangleFilter->SetInputData(grid);
m_VtkDataSetMapper->SetInput(grid);
m_VtkDataSetMapper2->SetInput(grid);
bool clip = false;
node->GetBoolProperty("enable clipping", clip);
mitk::DataNode::Pointer bbNode = renderer->GetDataStorage()->GetNamedDerivedNode("Clipping Bounding Object", node);
if (clip && bbNode.IsNotNull())
{
m_VtkDataSetMapper->SetBoundingObject(dynamic_cast<mitk::BoundingObject*>(bbNode->GetData()));
m_VtkDataSetMapper2->SetBoundingObject(dynamic_cast<mitk::BoundingObject*>(bbNode->GetData()));
}
else
{
m_VtkDataSetMapper->SetBoundingObject(0);
m_VtkDataSetMapper2->SetBoundingObject(0);
}
//
// apply properties read from the PropertyList
//
ApplyProperties(0, renderer);
}
bool mitk::PlanarFigureInteractor::HideControlPoints( StateMachineAction*, InteractionEvent* /*interactionEvent*/ )
{
GetDataNode()->SetBoolProperty( "planarfigure.drawcontrolpoints", false );
return true;
}
void mitk::VolumeDataVtkMapper3D::GenerateDataForRenderer( mitk::BaseRenderer *renderer )
{
SetVtkMapperImmediateModeRendering(m_BoundingBoxMapper);
mitk::Image *input = const_cast< mitk::Image * >( this->GetInput() );
if ( !input || !input->IsInitialized() )
return;
vtkRenderWindow* renderWindow = renderer->GetRenderWindow();
bool volumeRenderingEnabled = true;
bool visible = true;
GetDataNode()->GetVisibility(visible, renderer, "visible");
if ( !visible ||
this->GetDataNode() == NULL ||
dynamic_cast<mitk::BoolProperty*>(GetDataNode()->GetProperty("volumerendering",renderer))==NULL ||
dynamic_cast<mitk::BoolProperty*>(GetDataNode()->GetProperty("volumerendering",renderer))->GetValue() == false
)
{
volumeRenderingEnabled = false;
// Check if a bounding box should be displayed around the dataset
// (even if volume rendering is disabled)
bool hasBoundingBox = false;
this->GetDataNode()->GetBoolProperty( "bounding box", hasBoundingBox );
if ( !hasBoundingBox )
{
m_BoundingBoxActor->VisibilityOff();
}
else
{
m_BoundingBoxActor->VisibilityOn();
const BoundingBox::BoundsArrayType &bounds =
input->GetTimeSlicedGeometry()->GetBounds();
m_BoundingBox->SetBounds(
bounds[0], bounds[1],
bounds[2], bounds[3],
bounds[4], bounds[5] );
ColorProperty *colorProperty;
if ( this->GetDataNode()->GetProperty(
colorProperty, "color" ) )
{
const mitk::Color &color = colorProperty->GetColor();
m_BoundingBoxActor->GetProperty()->SetColor(
color[0], color[1], color[2] );
}
else
{
m_BoundingBoxActor->GetProperty()->SetColor(
1.0, 1.0, 1.0 );
}
}
}
// Don't do anything if VR is disabled
if ( !volumeRenderingEnabled )
{
m_VolumeLOD->VisibilityOff();
return;
}
else
{
mitk::VtkVolumeRenderingProperty* vrp=dynamic_cast<mitk::VtkVolumeRenderingProperty*>(GetDataNode()->GetProperty("volumerendering configuration",renderer));
if(vrp)
{
int renderingValue = vrp->GetValueAsId();
switch(renderingValue)
{
case VTK_VOLUME_RAY_CAST_MIP_FUNCTION:
{
vtkVolumeRayCastMIPFunction* mipFunction = vtkVolumeRayCastMIPFunction::New();
m_HiResMapper->SetVolumeRayCastFunction(mipFunction);
mipFunction->Delete();
MITK_INFO <<"in switch" <<std::endl;
break;
}
case VTK_RAY_CAST_COMPOSITE_FUNCTION:
{
vtkVolumeRayCastCompositeFunction* compositeFunction = vtkVolumeRayCastCompositeFunction::New();
compositeFunction->SetCompositeMethodToClassifyFirst();
m_HiResMapper->SetVolumeRayCastFunction(compositeFunction);
compositeFunction->Delete();
break;
}
default:
MITK_ERROR <<"Warning: invalid volume rendering option. " << std::endl;
}
}
m_VolumeLOD->VisibilityOn();
}
this->SetPreferences();
/*
switch ( mitk::RenderingManager::GetInstance()->GetNextLOD( renderer ) )
{
case 0:
m_VolumeLOD->SetSelectedLODID(m_MedResID); m_LowResID );
break;
default:
case 1:
m_VolumeLOD->SetSelectedLODID( m_HiResID );
break;
}
*/
m_VolumeLOD->SetSelectedLODID( m_HiResID );
assert(input->GetTimeSlicedGeometry());
const Geometry3D* worldgeometry = renderer->GetCurrentWorldGeometry();
if(worldgeometry==NULL)
{
GetDataNode()->SetProperty("volumerendering",mitk::BoolProperty::New(false));
return;
}
vtkImageData *inputData = input->GetVtkImageData( this->GetTimestep() );
if(inputData==NULL)
return;
m_ImageCast->SetInput( inputData );
//If mask exists, process mask before resampling.
if (this->m_Mask)
{
this->m_ImageMaskFilter->SetImageInput(this->m_UnitSpacingImageFilter->GetOutput());
this->m_Resampler->SetInput(this->m_ImageMaskFilter->GetOutput());
this->m_HiResMapper->SetInput(this->m_ImageMaskFilter->GetOutput());
}
else
{
this->m_Resampler->SetInput(this->m_UnitSpacingImageFilter->GetOutput());
this->m_HiResMapper->SetInput(this->m_UnitSpacingImageFilter->GetOutput());
}
this->UpdateTransferFunctions( renderer );
vtkRenderWindowInteractor *interactor = renderWindow->GetInteractor();
float frameRate;
if( this->GetDataNode()->GetFloatProperty( "framerate", frameRate ) && frameRate > 0 && frameRate <= 60)
{
interactor->SetDesiredUpdateRate( frameRate );
interactor->SetStillUpdateRate( frameRate );
}
else if( frameRate > 60 )
{
this->GetDataNode()->SetProperty( "framerate",mitk::FloatProperty::New(60));
interactor->SetDesiredUpdateRate( 60 );
interactor->SetStillUpdateRate( 60 );
}
else
{
this->GetDataNode()->SetProperty( "framerate",mitk::FloatProperty::New(0.00001));
interactor->SetDesiredUpdateRate( 0.00001 );
interactor->SetStillUpdateRate( 0.00001 );
}
if ( m_RenderWindowInitialized.find( renderWindow ) == m_RenderWindowInitialized.end() )
{
m_RenderWindowInitialized.insert( renderWindow );
// mitk::RenderingManager::GetInstance()->SetNextLOD( 0, renderer );
mitk::RenderingManager::GetInstance()->SetShading( true, 0 );
mitk::RenderingManager::GetInstance()->SetShading( true, 1 );
//mitk::RenderingManager::GetInstance()->SetShading( true, 2 );
mitk::RenderingManager::GetInstance()->SetShadingValues(
m_VolumePropertyHigh->GetAmbient(),
m_VolumePropertyHigh->GetDiffuse(),
m_VolumePropertyHigh->GetSpecular(),
m_VolumePropertyHigh->GetSpecularPower());
mitk::RenderingManager::GetInstance()->SetClippingPlaneStatus(false);
}
this->SetClippingPlane( interactor );
}
bool mitk::PlanarFigureInteractor::SelectFigure( StateMachineAction*, InteractionEvent* /*interactionEvent*/ )
{
mitk::PlanarFigure *planarFigure = dynamic_cast<mitk::PlanarFigure *>( GetDataNode()->GetData() );
planarFigure->InvokeEvent( SelectPlanarFigureEvent() );
return false;
}
const mitk::Image* mitk::VolumeDataVtkMapper3D::GetInput()
{
return static_cast<const mitk::Image*> ( GetDataNode()->GetData() );
}
void mitk::PolyDataGLMapper2D::Paint( mitk::BaseRenderer * renderer )
{
if ( IsVisible( renderer ) == false )
return ;
// ok, das ist aus GenerateData kopiert
mitk::BaseData::Pointer input = const_cast<mitk::BaseData*>( GetData() );
assert( input );
input->Update();
vtkPolyData * vtkpolydata = this->GetVtkPolyData();
assert( vtkpolydata );
vtkLinearTransform * vtktransform = GetDataNode() ->GetVtkTransform();
if (vtktransform)
{
vtkLinearTransform * inversetransform = vtktransform->GetLinearInverse();
Geometry2D::ConstPointer worldGeometry = renderer->GetCurrentWorldGeometry2D();
PlaneGeometry::ConstPointer worldPlaneGeometry = dynamic_cast<const PlaneGeometry*>( worldGeometry.GetPointer() );
if ( vtkpolydata != NULL )
{
Point3D point;
Vector3D normal;
if(worldPlaneGeometry.IsNotNull())
{
// set up vtkPlane according to worldGeometry
point=worldPlaneGeometry->GetOrigin();
normal=worldPlaneGeometry->GetNormal(); normal.Normalize();
m_Plane->SetTransform((vtkAbstractTransform*)NULL);
}
else
{
//@FIXME: does not work correctly. Does m_Plane->SetTransform really transforms a "plane plane" into a "curved plane"?
return;
AbstractTransformGeometry::ConstPointer worldAbstractGeometry = dynamic_cast<const AbstractTransformGeometry*>(renderer->GetCurrentWorldGeometry2D());
if(worldAbstractGeometry.IsNotNull())
{
// set up vtkPlane according to worldGeometry
point=const_cast<mitk::BoundingBox*>(worldAbstractGeometry->GetParametricBoundingBox())->GetMinimum();
FillVector3D(normal, 0, 0, 1);
m_Plane->SetTransform(worldAbstractGeometry->GetVtkAbstractTransform()->GetInverse());
}
else
return;
}
vtkFloatingPointType vp[ 3 ], vnormal[ 3 ];
vnl2vtk(point.Get_vnl_vector(), vp);
vnl2vtk(normal.Get_vnl_vector(), vnormal);
//normally, we would need to transform the surface and cut the transformed surface with the cutter.
//This might be quite slow. Thus, the idea is, to perform an inverse transform of the plane instead.
//@todo It probably does not work for scaling operations yet:scaling operations have to be
//dealed with after the cut is performed by scaling the contour.
inversetransform->TransformPoint( vp, vp );
inversetransform->TransformNormalAtPoint( vp, vnormal, vnormal );
m_Plane->SetOrigin( vp );
m_Plane->SetNormal( vnormal );
// set data into cutter
m_Cutter->SetInput( vtkpolydata );
// m_Cutter->GenerateCutScalarsOff();
// m_Cutter->SetSortByToSortByCell();
// calculate the cut
m_Cutter->Update();
// fetch geometry
mitk::DisplayGeometry::Pointer displayGeometry = renderer->GetDisplayGeometry();
assert( displayGeometry );
// float toGL=displayGeometry->GetSizeInDisplayUnits()[1];
//apply color and opacity read from the PropertyList
ApplyProperties( renderer );
// traverse the cut contour
vtkPolyData * contour = m_Cutter->GetOutput();
vtkPoints *vpoints = contour->GetPoints();
vtkCellArray *vpolys = contour->GetLines();
vtkPointData *vpointdata = contour->GetPointData();
vtkDataArray* vscalars = vpointdata->GetScalars();
vtkCellData *vcelldata = contour->GetCellData();
vtkDataArray* vcellscalars = vcelldata->GetScalars();
int i, numberOfCells = vpolys->GetNumberOfCells();
Point3D p;
Point2D p2d, last, first;
vpolys->InitTraversal();
vtkScalarsToColors* lut = GetVtkLUT();
assert ( lut != NULL );
for ( i = 0;i < numberOfCells;++i )
{
vtkIdType *cell(NULL);
vtkIdType cellSize(0);
vpolys->GetNextCell( cellSize, cell );
if ( m_ColorByCellData )
{ // color each cell according to cell data
vtkFloatingPointType* color = lut->GetColor( vcellscalars->GetComponent( i, 0 ) );
glColor3f( color[ 0 ], color[ 1 ], color[ 2 ] );
}
if ( m_ColorByPointData )
{
vtkFloatingPointType* color = lut->GetColor( vscalars->GetComponent( cell[0], 0 ) );
glColor3f( color[ 0 ], color[ 1 ], color[ 2 ] );
}
glBegin ( GL_LINE_LOOP );
for ( int j = 0;j < cellSize;++j )
{
vpoints->GetPoint( cell[ j ], vp );
//take transformation via vtktransform into account
vtktransform->TransformPoint( vp, vp );
vtk2itk( vp, p );
//convert 3D point (in mm) to 2D point on slice (also in mm)
worldGeometry->Map( p, p2d );
//convert point (until now mm and in worldcoordinates) to display coordinates (units )
displayGeometry->WorldToDisplay( p2d, p2d );
//convert display coordinates ( (0,0) is top-left ) in GL coordinates ( (0,0) is bottom-left )
//p2d[1]=toGL-p2d[1];
//add the current vertex to the line
glVertex2f( p2d[0], p2d[1] );
}
glEnd ();
}
}
}
}
const mitk::PointSet *mitk::PointSetVtkMapper3D::GetInput()
{
return static_cast<const mitk::PointSet *>(GetDataNode()->GetData());
}
const mitk::ConnectomicsNetwork *mitk::ConnectomicsNetworkMapper3D::GetInput()
{
return static_cast<const mitk::ConnectomicsNetwork *>(GetDataNode()->GetData());
}
bool mitk::PointSetDataInteractor::FinishMove(StateMachineAction* stateMachineAction, InteractionEvent* interactionEvent)
{
IsClosedContour(stateMachineAction, interactionEvent);
GetDataNode()->SetProperty("contourcolor", ColorProperty::New(1.0, 0.0, 0.0));
return true;
}
void mitk::ConnectomicsNetworkMapper3D::GenerateDataForRenderer(mitk::BaseRenderer *renderer)
{
if (this->GetInput() == nullptr)
{
m_TextOverlay3D->UnRegisterMicroservice();
return;
}
bool propertiesHaveChanged = this->PropertiesChanged();
if (this->GetInput()->GetIsModified() || propertiesHaveChanged)
{
m_NetworkAssembly->Delete();
m_NetworkAssembly = vtkPropAssembly::New();
// Here is the part where a graph is given and converted to points and connections between points...
std::vector<mitk::ConnectomicsNetwork::NetworkNode> vectorOfNodes = this->GetInput()->GetVectorOfAllNodes();
std::vector<std::pair<std::pair<mitk::ConnectomicsNetwork::NetworkNode, mitk::ConnectomicsNetwork::NetworkNode>,
mitk::ConnectomicsNetwork::NetworkEdge>>
vectorOfEdges = this->GetInput()->GetVectorOfAllEdges();
// Decide on the style of rendering due to property
if (m_ChosenRenderingScheme == connectomicsRenderingMITKScheme)
{
mitk::Point3D tempWorldPoint, tempCNFGeometryPoint;
////// Prepare BalloonWidgets/Overlays: ////////////////////
if ((m_ChosenNodeLabel == "" || m_ChosenNodeLabel == "-1") && m_TextOverlay3D)
{
m_TextOverlay3D->UnRegisterMicroservice();
GetDataNode()->SetProperty(
connectomicsRenderingBalloonTextName.c_str(), mitk::StringProperty::New(""), nullptr);
GetDataNode()->SetProperty(
connectomicsRenderingBalloonNodeStatsName.c_str(), mitk::StringProperty::New(""), nullptr);
}
//////////////////////Prepare coloring and radius////////////
std::vector<double> vectorOfNodeRadiusParameterValues;
vectorOfNodeRadiusParameterValues.resize(vectorOfNodes.size());
double maxNodeRadiusParameterValue(
FillNodeParameterVector(&vectorOfNodeRadiusParameterValues, m_NodeRadiusParameter));
std::vector<double> vectorOfNodeColorParameterValues;
vectorOfNodeColorParameterValues.resize(vectorOfNodes.size());
double maxNodeColorParameterValue(
FillNodeParameterVector(&vectorOfNodeColorParameterValues, m_NodeColorParameter));
std::vector<double> vectorOfEdgeRadiusParameterValues;
vectorOfEdgeRadiusParameterValues.resize(vectorOfEdges.size());
double maxEdgeRadiusParameterValue(
FillEdgeParameterVector(&vectorOfEdgeRadiusParameterValues, m_EdgeRadiusParameter));
std::vector<double> vectorOfEdgeColorParameterValues;
vectorOfEdgeColorParameterValues.resize(vectorOfEdges.size());
double maxEdgeColorParameterValue(
FillEdgeParameterVector(&vectorOfEdgeColorParameterValues, m_EdgeColorParameter));
//////////////////////Prepare Filtering//////////////////////
// true will be rendered
std::vector<bool> vectorOfNodeFilterBools(vectorOfNodes.size(), true);
if (m_ChosenNodeFilter == connectomicsRenderingNodeThresholdingFilter)
{
FillNodeFilterBoolVector(&vectorOfNodeFilterBools, m_NodeThresholdParameter);
}
std::vector<bool> vectorOfEdgeFilterBools(vectorOfEdges.size(), true);
if (m_ChosenEdgeFilter == connectomicsRenderingEdgeThresholdFilter)
{
FillEdgeFilterBoolVector(&vectorOfEdgeFilterBools, m_EdgeThresholdParameter);
}
//////////////////////Create Spheres/////////////////////////
std::stringstream
nodeLabelStream; // local stream variable to hold csv list of node label names and node label numbers.
for (unsigned int i = 0; i < vectorOfNodes.size(); i++)
{
vtkSmartPointer<vtkSphereSource> sphereSource = vtkSmartPointer<vtkSphereSource>::New();
for (unsigned int dimension = 0; dimension < 3; dimension++)
{
tempCNFGeometryPoint.SetElement(dimension, vectorOfNodes[i].coordinates[dimension]);
}
GetDataNode()->GetData()->GetGeometry()->IndexToWorld(tempCNFGeometryPoint, tempWorldPoint);
sphereSource->SetCenter(tempWorldPoint[0], tempWorldPoint[1], tempWorldPoint[2]);
// determine radius
double radiusFactor = vectorOfNodeRadiusParameterValues[i] / maxNodeRadiusParameterValue;
double radius = m_NodeRadiusStart + (m_NodeRadiusEnd - m_NodeRadiusStart) * radiusFactor;
sphereSource->SetRadius(radius);
vtkSmartPointer<vtkPolyDataMapper> mapper = vtkSmartPointer<vtkPolyDataMapper>::New();
mapper->SetInputConnection(sphereSource->GetOutputPort());
vtkSmartPointer<vtkActor> actor = vtkSmartPointer<vtkActor>::New();
actor->SetMapper(mapper);
// determine color
double colorFactor = vectorOfNodeColorParameterValues[i] / maxNodeColorParameterValue;
double redStart = m_NodeColorStart.GetElement(0);
double greenStart = m_NodeColorStart.GetElement(1);
double blueStart = m_NodeColorStart.GetElement(2);
double redEnd = m_NodeColorEnd.GetElement(0);
double greenEnd = m_NodeColorEnd.GetElement(1);
double blueEnd = m_NodeColorEnd.GetElement(2);
double red = redStart + (redEnd - redStart) * colorFactor;
double green = greenStart + (greenEnd - greenStart) * colorFactor;
double blue = blueStart + (blueEnd - blueStart) * colorFactor;
actor->GetProperty()->SetColor(red, green, blue);
// append to csv list of nodelabels.
nodeLabelStream << m_Translator->GetName(std::stoi(vectorOfNodes[i].label)) << ": " << vectorOfNodes[i].label
<< ",";
if (vectorOfNodeFilterBools[i])
{
if (vectorOfNodes[i].label == m_ChosenNodeLabel)
{ // if chosen and enabled, show information in Balloon or TextOverlay:
// What to show:
std::stringstream balloonStringstream;
balloonStringstream << "Node id: " << vectorOfNodes[i].id << "\nlabel: " << vectorOfNodes[i].label
<< "\nname: " << m_Translator->GetName(std::stoi(vectorOfNodes[i].label)) << std::endl;
m_BalloonText = balloonStringstream.str();
GetDataNode()->SetProperty(
connectomicsRenderingBalloonTextName.c_str(), mitk::StringProperty::New(m_BalloonText.c_str()), nullptr);
std::stringstream balloonNodeStatsStream;
balloonNodeStatsStream << "Coordinates: (" << vectorOfNodes[i].coordinates[0] << " ; "
<< vectorOfNodes[i].coordinates[1] << " ; " << vectorOfNodes[i].coordinates[2]
<< " )"
<< "\nDegree: " << (this->GetInput()->GetDegreeOfNodes()).at(vectorOfNodes[i].id)
<< "\nBetweenness centrality: "
<< (this->GetInput()->GetNodeBetweennessVector()).at(vectorOfNodes[i].id)
<< "\nClustering coefficient: "
<< (this->GetInput()->GetLocalClusteringCoefficients()).at(vectorOfNodes[i].id)
<< std::endl;
m_BalloonNodeStats = balloonNodeStatsStream.str();
GetDataNode()->SetProperty(connectomicsRenderingBalloonNodeStatsName.c_str(),
mitk::StringProperty::New(m_BalloonNodeStats.c_str()),
nullptr);
// Where to show:
float r[3];
r[0] = vectorOfNodes[i].coordinates[0];
r[1] = vectorOfNodes[i].coordinates[1];
r[2] = vectorOfNodes[i].coordinates[2];
mitk::Point3D BalloonAnchor(r);
mitk::Point3D BalloonAnchorWorldCoord(r);
GetDataNode()->GetData()->GetGeometry()->IndexToWorld(BalloonAnchor, BalloonAnchorWorldCoord);
// How to show:
if (m_ChosenNodeLabel != "-1")
{
if (m_TextOverlay3D != nullptr)
{
m_TextOverlay3D->UnRegisterMicroservice();
}
m_TextOverlay3D = mitk::TextAnnotation3D::New();
mitk::ManualPlacementAnnotationRenderer::AddAnnotation(m_TextOverlay3D.GetPointer(), renderer);
m_TextOverlay3D->SetFontSize(2);
m_TextOverlay3D->SetColor(0.96, 0.69, 0.01);
m_TextOverlay3D->SetOpacity(0.81);
m_TextOverlay3D->SetPosition3D(BalloonAnchorWorldCoord);
m_TextOverlay3D->SetText("...." + m_BalloonText);
m_TextOverlay3D->SetForceInForeground(true); // TODO: does not work anymore.
m_TextOverlay3D->SetVisibility(GetDataNode()->IsVisible(renderer));
// Colorize chosen node:
actor->GetProperty()->SetColor(1.0, 0.69, 0.01);
}
}
m_NetworkAssembly->AddPart(actor);
}
}
m_AllNodeLabels = nodeLabelStream.str(); // Store all Node Names and Node Labels in 1 Property.
m_AllNodeLabels.erase(m_AllNodeLabels.rfind(","), 1); // remove trailing ,.
GetDataNode()->SetProperty(connectomicsRenderingBalloonAllNodeLabelsName.c_str(),
mitk::StringProperty::New(m_AllNodeLabels.c_str()),
nullptr);
//////////////////////Create Tubes/////////////////////////
for (unsigned int i = 0; i < vectorOfEdges.size(); i++)
{
vtkSmartPointer<vtkLineSource> lineSource = vtkSmartPointer<vtkLineSource>::New();
for (unsigned int dimension = 0; dimension < 3; dimension++)
{
tempCNFGeometryPoint[dimension] = vectorOfEdges[i].first.first.coordinates[dimension];
}
GetDataNode()->GetData()->GetGeometry()->IndexToWorld(tempCNFGeometryPoint, tempWorldPoint);
lineSource->SetPoint1(tempWorldPoint[0], tempWorldPoint[1], tempWorldPoint[2]);
for (unsigned int dimension = 0; dimension < 3; dimension++)
{
tempCNFGeometryPoint[dimension] = vectorOfEdges[i].first.second.coordinates[dimension];
}
GetDataNode()->GetData()->GetGeometry()->IndexToWorld(tempCNFGeometryPoint, tempWorldPoint);
lineSource->SetPoint2(tempWorldPoint[0], tempWorldPoint[1], tempWorldPoint[2]);
vtkSmartPointer<vtkTubeFilter> tubes = vtkSmartPointer<vtkTubeFilter>::New();
tubes->SetInputConnection(lineSource->GetOutputPort());
tubes->SetNumberOfSides(12);
// determine radius
double radiusFactor = vectorOfEdgeRadiusParameterValues[i] / maxEdgeRadiusParameterValue;
double radius = m_EdgeRadiusStart + (m_EdgeRadiusEnd - m_EdgeRadiusStart) * radiusFactor;
tubes->SetRadius(radius);
// originally we used a logarithmic scaling,
// double radiusFactor = 1.0 + ((double) vectorOfEdges[i].second.weight) / 10.0 ;
// tubes->SetRadius( std::log10( radiusFactor ) );
vtkSmartPointer<vtkPolyDataMapper> mapper2 = vtkSmartPointer<vtkPolyDataMapper>::New();
mapper2->SetInputConnection(tubes->GetOutputPort());
vtkSmartPointer<vtkActor> actor = vtkSmartPointer<vtkActor>::New();
actor->SetMapper(mapper2);
// determine color
double colorFactor = vectorOfEdgeColorParameterValues[i] / maxEdgeColorParameterValue;
double redStart = m_EdgeColorStart.GetElement(0);
double greenStart = m_EdgeColorStart.GetElement(1);
double blueStart = m_EdgeColorStart.GetElement(2);
double redEnd = m_EdgeColorEnd.GetElement(0);
double greenEnd = m_EdgeColorEnd.GetElement(1);
double blueEnd = m_EdgeColorEnd.GetElement(2);
double red = redStart + (redEnd - redStart) * colorFactor;
double green = greenStart + (greenEnd - greenStart) * colorFactor;
double blue = blueStart + (blueEnd - blueStart) * colorFactor;
actor->GetProperty()->SetColor(red, green, blue);
if (vectorOfEdgeFilterBools[i])
{
m_NetworkAssembly->AddPart(actor);
}
}
}
else if (m_ChosenRenderingScheme == connectomicsRenderingVTKScheme)
{
vtkSmartPointer<vtkMutableUndirectedGraph> graph = vtkSmartPointer<vtkMutableUndirectedGraph>::New();
std::vector<vtkIdType> networkToVTKvector;
networkToVTKvector.resize(vectorOfNodes.size());
for (unsigned int i = 0; i < vectorOfNodes.size(); i++)
{
networkToVTKvector[vectorOfNodes[i].id] = graph->AddVertex();
}
for (unsigned int i = 0; i < vectorOfEdges.size(); i++)
{
graph->AddEdge(networkToVTKvector[vectorOfEdges[i].first.first.id],
networkToVTKvector[vectorOfEdges[i].first.second.id]);
}
vtkSmartPointer<vtkPoints> points = vtkSmartPointer<vtkPoints>::New();
for (unsigned int i = 0; i < vectorOfNodes.size(); i++)
{
double x = vectorOfNodes[i].coordinates[0];
double y = vectorOfNodes[i].coordinates[1];
double z = vectorOfNodes[i].coordinates[2];
points->InsertNextPoint(x, y, z);
}
graph->SetPoints(points);
vtkGraphLayout *layout = vtkGraphLayout::New();
layout->SetInputData(graph);
vtkPassThroughLayoutStrategy *ptls = vtkPassThroughLayoutStrategy::New();
layout->SetLayoutStrategy(ptls);
vtkGraphToPolyData *graphToPoly = vtkGraphToPolyData::New();
graphToPoly->SetInputConnection(layout->GetOutputPort());
// Create the standard VTK polydata mapper and actor
// for the connections (edges) in the tree.
vtkPolyDataMapper *edgeMapper = vtkPolyDataMapper::New();
edgeMapper->SetInputConnection(graphToPoly->GetOutputPort());
vtkActor *edgeActor = vtkActor::New();
edgeActor->SetMapper(edgeMapper);
edgeActor->GetProperty()->SetColor(0.0, 0.5, 1.0);
// Glyph the points of the tree polydata to create
// VTK_VERTEX cells at each vertex in the tree.
vtkGlyph3D *vertGlyph = vtkGlyph3D::New();
vertGlyph->SetInputConnection(0, graphToPoly->GetOutputPort());
vtkGlyphSource2D *glyphSource = vtkGlyphSource2D::New();
glyphSource->SetGlyphTypeToVertex();
vertGlyph->SetInputConnection(1, glyphSource->GetOutputPort());
// Create a mapper for the vertices, and tell the mapper
// to use the specified color array.
vtkPolyDataMapper *vertMapper = vtkPolyDataMapper::New();
vertMapper->SetInputConnection(vertGlyph->GetOutputPort());
/*if (colorArray)
{
vertMapper->SetScalarModeToUsePointFieldData();
vertMapper->SelectColorArray(colorArray);
vertMapper->SetScalarRange(colorRange);
}*/
// Create an actor for the vertices. Move the actor forward
// in the z direction so it is drawn on top of the edge actor.
vtkActor *vertActor = vtkActor::New();
vertActor->SetMapper(vertMapper);
vertActor->GetProperty()->SetPointSize(5);
vertActor->SetPosition(0, 0, 0.001);
// vtkProp3D.h: virtual void SetPosition(double,double,double):
// Set/Get/Add the position of the Prop3D in world coordinates.
m_NetworkAssembly->AddPart(edgeActor);
m_NetworkAssembly->AddPart(vertActor);
}
(static_cast<mitk::ConnectomicsNetwork *>(GetDataNode()->GetData()))->SetIsModified(false);
}
}
void mitk::UnstructuredGridMapper2D::GenerateDataForRenderer( mitk::BaseRenderer* renderer )
{
BaseLocalStorage *ls = m_LSH.GetLocalStorage(renderer);
bool needGenerateData = ls->IsGenerateDataRequired( renderer, this, GetDataNode() );
if(needGenerateData)
{
ls->UpdateGenerateDataTime();
mitk::DataNode::ConstPointer node = this->GetDataNode();
if ( node.IsNull() )
return;
if (!node->GetProperty(m_ScalarMode, "scalar mode"))
{
m_ScalarMode = mitk::VtkScalarModeProperty::New(0);
}
if (!node->GetProperty(m_ScalarVisibility, "scalar visibility"))
{
m_ScalarVisibility = mitk::BoolProperty::New(true);
}
if (!node->GetProperty(m_Outline, "outline polygons"))
{
m_Outline = mitk::BoolProperty::New(false);
}
if (!node->GetProperty(m_Color, "color"))
{
m_Color = mitk::ColorProperty::New(1.0f, 1.0f, 1.0f);
}
if (!node->GetProperty(m_LineWidth, "line width"))
{
m_LineWidth = mitk::IntProperty::New(1);
}
}
mitk::BaseData::Pointer input = const_cast<mitk::BaseData*>( GetDataNode()->GetData() );
assert( input );
input->Update();
if (m_VtkPointSet) m_VtkPointSet->UnRegister(0);
m_VtkPointSet = this->GetVtkPointSet(renderer, this->GetTimestep());
assert(m_VtkPointSet);
m_VtkPointSet->Register(0);
if (m_ScalarVisibility->GetValue())
{
mitk::DataNode::ConstPointer node = this->GetDataNode();
mitk::TransferFunctionProperty::Pointer transferFuncProp;
node->GetProperty(transferFuncProp, "TransferFunction", renderer);
if (transferFuncProp.IsNotNull())
{
mitk::TransferFunction::Pointer tf = transferFuncProp->GetValue();
if (m_ScalarsToColors) m_ScalarsToColors->UnRegister(0);
m_ScalarsToColors = static_cast<vtkScalarsToColors*>(tf->GetColorTransferFunction());
m_ScalarsToColors->Register(0);
if (m_ScalarsToOpacity) m_ScalarsToOpacity->UnRegister(0);
m_ScalarsToOpacity = tf->GetScalarOpacityFunction();
m_ScalarsToOpacity->Register(0);
}
else
{
if (m_ScalarsToColors) m_ScalarsToColors->UnRegister(0);
m_ScalarsToColors = this->GetVtkLUT(renderer);
assert(m_ScalarsToColors);
m_ScalarsToColors->Register(0);
float opacity;
node->GetOpacity(opacity, renderer);
if (m_ScalarsToOpacity) m_ScalarsToOpacity->UnRegister(0);
m_ScalarsToOpacity = vtkPiecewiseFunction::New();
double range[2];
m_VtkPointSet->GetScalarRange(range);
m_ScalarsToOpacity->AddSegment(range[0], opacity, range[1], opacity);
}
}
}
const mitk::Image* mitk::DoseImageVtkMapper2D::GetInput( void )
{
return static_cast< const mitk::Image * >( GetDataNode()->GetData() );
}