/*-------------------------------------------------------------------------
* Function: trav_print_visit_lnk
*
* Purpose: Callback for visiting link, when printing info
*
* Return: 0 on success,
* -1 on failure
*-------------------------------------------------------------------------
*/
static int
trav_print_visit_lnk(const char *path, const H5L_info_t *linfo, void *udata)
{
trav_print_udata_t *print_udata = (trav_print_udata_t *)udata;
/* Print appropriate information for the type of link */
switch(linfo->type) {
case H5L_TYPE_SOFT:
if(linfo->u.val_size > 0) {
char *targbuf = (char*)HDmalloc(linfo->u.val_size + 1);
if(targbuf) {
if(H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) < 0)
targbuf[0] = 0;
printf(" %-10s %s -> %s\n", "link", path, targbuf);
HDfree(targbuf);
}
} /* end if */
else
printf(" %-10s %s ->\n", "link", path);
break;
case H5L_TYPE_EXTERNAL:
if(linfo->u.val_size > 0) {
char *targbuf = NULL;
const char *filename = NULL;
const char *objname = NULL;
targbuf = (char*)HDmalloc(linfo->u.val_size + 1);
if(targbuf) {
if(H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) < 0)
targbuf[0] = 0;
if(H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) >= 0)
printf(" %-10s %s -> %s %s\n", "ext link", path, filename, objname);
HDfree(targbuf);
}
} /* end if */
else
printf(" %-10s %s ->\n", "ext link", path);
break;
case H5L_TYPE_HARD:
/* Should be handled elsewhere */
return(-1);
case H5L_TYPE_ERROR:
case H5L_TYPE_MAX:
default:
printf(" %-10s %s -> ???\n", "unknown type of UD link", path);
break;
} /* end switch() */
return(0);
} /* end trav_print_visit_lnk() */
//--------------------------------------------------------------------------
// Function: CommonFG::getLinkval
///\brief Returns the name of the object that the symbolic link points to.
///\param name - IN: Symbolic link to the object
///\param size - IN: Maximum number of characters of value to be returned
///\return Name of the object
///\exception H5::FileIException or H5::GroupIException
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
H5std_string CommonFG::getLinkval( const char* name, size_t size ) const
{
H5L_info_t linkinfo;
char *value_C; // value in C string
size_t val_size = size;
H5std_string value = "";
herr_t ret_value;
// if user doesn't provide buffer size, determine it
if (size == 0)
{
ret_value = H5Lget_info(getLocId(), name, &linkinfo, H5P_DEFAULT);
if( ret_value < 0 )
{
throwException("getLinkval", "H5Lget_info to find buffer size failed");
}
val_size = linkinfo.u.val_size;
}
// if link has value, retrieve the value, otherwise, return null string
if (val_size > 0)
{
value_C = new char[val_size+1]; // temporary C-string for C API
ret_value = H5Lget_val(getLocId(), name, value_C, val_size, H5P_DEFAULT);
if( ret_value < 0 )
{
throwException("getLinkval", "H5Lget_val failed");
}
value = H5std_string(value_C);
delete []value_C;
}
return(value);
}
std::string H5SoftLink::getLinkValue() const
{
herr_t err;
H5L_info_t info;
char * buf = 0;
std::string ret;
err = H5Lget_info(getParent().getH5Id(), name.c_str(), &info, H5P_DEFAULT);
if (err < 0)
{
throw H5Exception(__LINE__, __FILE__, _("Cannot get the link info"));
}
buf = new char[info.u.val_size];
err = H5Lget_val(getParent().getH5Id(), name.c_str(), static_cast<void *>(buf), info.u.val_size, H5P_DEFAULT);
if (err < 0)
{
throw H5Exception(__LINE__, __FILE__, _("Cannot get the link target"));
}
ret = std::string(buf);
delete[] buf;
return ret;
}
/*------------------------------------------------------------------------- * Function: trav_print_visit_lnk * * Purpose: Callback for visiting link, when printing info * * Return: 0 on success, -1 on failure * * Programmer: Quincey Koziol, [email protected] * * Date: September 6, 2007 * *------------------------------------------------------------------------- */ static int trav_print_visit_lnk(const char *path, const H5L_info_t *linfo, void *udata) { trav_print_udata_t *print_udata = (trav_print_udata_t *)udata; /* Print appropriate information for the type of link */ switch(linfo->type) { case H5L_TYPE_SOFT: if(linfo->u.val_size > 0) { char *targbuf = (char*)HDmalloc(linfo->u.val_size + 1); HDassert(targbuf); H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT); printf(" %-10s %s -> %s\n", "link", path, targbuf); HDfree(targbuf); } /* end if */ else printf(" %-10s %s ->\n", "link", path); break; case H5L_TYPE_EXTERNAL: if(linfo->u.val_size > 0) { char *targbuf; const char *filename; const char *objname; targbuf = (char*)HDmalloc(linfo->u.val_size + 1); HDassert(targbuf); H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT); H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname); printf(" %-10s %s -> %s %s\n", "ext link", path, filename, objname); HDfree(targbuf); } /* end if */ else printf(" %-10s %s ->\n", "ext link", path); break; default: printf(" %-10s %s -> ???\n", "unknown type of UD link", path); break; } /* end switch() */ return(0); } /* end trav_print_visit_lnk() */
int VsFilter::visitLinks(hid_t locId, const char* name,
const H5L_info_t *linfo, void* opdata) {
VsLog::debugLog() <<"VsFilter::visitLinks() - looking at object " <<name <<std::endl;
switch (linfo->type) {
case H5L_TYPE_HARD: {
H5O_info_t objinfo;
/* Stat the object */
if(H5Oget_info_by_name(locId, name, &objinfo, H5P_DEFAULT) < 0) {
VsLog::errorLog() <<"VsFilter::visitLinks() - unable to open object with name " <<name <<std::endl;
VsLog::errorLog() <<"VsFilter::visitLinks() - this object and all children will be dropped." <<std::endl;
return 0;
}
switch(objinfo.type)
{
case H5O_TYPE_GROUP:
return visitGroup( locId, name, opdata );
break;
case H5O_TYPE_DATASET:
return visitDataset( locId, name, opdata );
break;
default:
VsLog::debugLog() << "VsFilter::visitLinks: node '" << name <<
"' has an unknown type " << objinfo.type << std::endl;
break;
}
}
break;
//end of case H5L_TYPE_HARD
case H5L_TYPE_EXTERNAL: {
char *targbuf = (char*) malloc( linfo->u.val_size );
if (H5Lget_val(locId, name, targbuf, linfo->u.val_size, H5P_DEFAULT) < 0) {
VsLog::errorLog() <<"VsFilter::visitLinks() - unable to open external link with name " <<targbuf <<std::endl;
VsLog::errorLog() <<"VsFilter::visitLinks() - this object and all children will be dropped." <<std::endl;
return 0;
}
const char *filename;
const char *targname;
if (H5Lunpack_elink_val(targbuf, linfo->u.val_size, 0, &filename, &targname) < 0) {
VsLog::errorLog() <<"VsFilter::visitLinks() - unable to open external file with name " <<filename <<std::endl;
VsLog::errorLog() <<"VsFilter::visitLinks() - this object and all children will be dropped." <<std::endl;
return 0;
}
VsLog::debugLog() << "VsFilter::visitLinks(): node '" << name << "' is an external link." << std::endl;
VsLog::debugLog() << "VsFilter::visitLinks(): node '" << targname << "' is an external target group." << std::endl;
free(targbuf);
targbuf = NULL;
// Get info of the linked object.
H5O_info_t objinfo;
#ifndef H5_USE_16_API
hid_t obj_id = H5Oopen(locId, name, H5P_DEFAULT);
#else
hid_t obj_id = H5Oopen(locId, name);
#endif
if (obj_id < 0) {
VsLog::errorLog() <<"VsFilter::visitLinks() - unable to get id for external object " <<name <<std::endl;
VsLog::errorLog() <<"VsFilter::visitLinks() - this object and all children will be dropped." <<std::endl;
return 0;
}
//Test-open the linked object
if (H5Oget_info (obj_id, &objinfo) < 0) {
VsLog::errorLog() <<"VsFilter::visitLinks() - unable to open external object " <<name <<std::endl;
VsLog::errorLog() <<"VsFilter::visitLinks() - this object and all children will be dropped." <<std::endl;
return 0;
}
//Close the linked object to release hdf5 id
H5Oclose( obj_id );
//Finally, decide what to do depending on what type of object this is
switch(objinfo.type)
{
case H5O_TYPE_GROUP:
return visitGroup( locId, name, opdata );
break;
case H5O_TYPE_DATASET:
return visitDataset( locId, name, opdata );
break;
default:
VsLog::debugLog() << "VsFilter::visitLinks: node '" << name <<
"' has an unknown type " << objinfo.type << std::endl;
break;
}
}
break;
//END OF CASE H5L_TYPE_EXTERNAL
default:
VsLog::debugLog() << "VsFilter::visitLinks: node '" << name <<
"' has an unknown object type " << linfo->type << std::endl;
break;
}
return 0;
}
/*
* Class: hdf_hdf5lib_H5
* Method: H5Lget_value
* Signature: (JLjava/lang/String;[Ljava/lang/String;J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Lget_1value
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jobjectArray link_value, jlong access_id)
{
size_t buf_size;
herr_t status;
H5L_info_t infobuf;
const char *lName;
char *lValue;
const char *file_name;
const char *obj_name;
jstring str;
infobuf.type = -1;
PIN_JAVA_STRING(name, lName);
if (lName != NULL) {
/* get the length of the link val */
status = H5Lget_info((hid_t)loc_id, lName, &infobuf, H5P_DEFAULT);
if(status < 0) {
h5libraryError(env);
} /* end if */
else {
buf_size = infobuf.u.val_size + 1;/* add extra space for the null terminator */
if(infobuf.type == H5L_TYPE_HARD) {
h5JNIFatalError(env, "H5Lget_val: link is hard type");
} /* end if */
else {
lValue = (char*)HDmalloc(sizeof(char) * buf_size);
if (lValue == NULL) {
h5outOfMemory(env, "H5Lget_val: malloc failed");
} /* end if */
else {
status = H5Lget_val((hid_t)loc_id, lName, (void*)lValue, buf_size, (hid_t)access_id);
if (status < 0) {
h5libraryError(env);
} /* end if */
else if(infobuf.type == H5L_TYPE_EXTERNAL) {
status = H5Lunpack_elink_val(lValue, (size_t)infobuf.u.val_size, (unsigned*)NULL, &file_name, &obj_name);
if (status < 0) {
h5libraryError(env);
} /* end if */
else {
str = ENVPTR->NewStringUTF(ENVPAR obj_name);
if (str == NULL) {
h5JNIFatalError(env, "H5Lget_val: return string not created");
} /* end if */
else {
ENVPTR->SetObjectArrayElement(ENVPAR link_value, 0, str);
str = ENVPTR->NewStringUTF(ENVPAR file_name);
if (str == NULL) {
h5JNIFatalError(env, "H5Lget_val: return string not created");
} /* end if */
else {
ENVPTR->SetObjectArrayElement(ENVPAR link_value, 1, str);
} /* end else */
} /* end else */
} /* end else */
} /* end else if */
else {
str = ENVPTR->NewStringUTF(ENVPAR lValue);
if (str == NULL) {
/* exception -- fatal JNI error */
h5JNIFatalError(env, "H5Lget_val: return string not created");
} /* end if */
else {
ENVPTR->SetObjectArrayElement(ENVPAR link_value, 0, str);
} /* end else */
} /* end else */
HDfree(lValue);
} /* end else */
} /* end else */
} /* end else */
UNPIN_JAVA_STRING(name, lName);
}
return infobuf.type;
} /* end Java_hdf_hdf5lib_H5_H5Lget_1val */
/*-------------------------------------------------------------------------
* Function: H5tools_get_symlink_info
*
* Purpose: Get symbolic link (soft, external) info and its target object type
(dataset, group, named datatype) and path, if exist
*
* Patameters:
* - [IN] fileid : link file id
* - [IN] linkpath : link path
* - [OUT] link_info: returning target object info (h5tool_link_info_t)
*
* Return:
* 2 : given pathname is object
* 1 : Succed to get link info.
* 0 : Detected as a dangling link
* -1 : H5 API failed.
*
* NOTE:
* link_info->trg_path must be freed out of this function
*
* Programmer: Jonathan Kim
*
* Date: Feb 8, 2010
*-------------------------------------------------------------------------*/
int
H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_t *link_info,
hbool_t get_obj_type)
{
htri_t l_ret;
H5O_info_t trg_oinfo;
hid_t fapl = H5P_DEFAULT;
hid_t lapl = H5P_DEFAULT;
int ret = -1; /* init to fail */
/* init */
link_info->trg_type = H5O_TYPE_UNKNOWN;
/* if path is root, return group type */
if(!HDstrcmp(linkpath,"/"))
{
link_info->trg_type = H5O_TYPE_GROUP;
ret = 2;
goto out;
}
/* check if link itself exist */
if(H5Lexists(file_id, linkpath, H5P_DEFAULT) <= 0) {
if(link_info->opt.msg_mode == 1)
parallel_print("Warning: link <%s> doesn't exist \n",linkpath);
goto out;
} /* end if */
/* get info from link */
if(H5Lget_info(file_id, linkpath, &(link_info->linfo), H5P_DEFAULT) < 0) {
if(link_info->opt.msg_mode == 1)
parallel_print("Warning: unable to get link info from <%s>\n",linkpath);
goto out;
} /* end if */
/* given path is hard link (object) */
if(link_info->linfo.type == H5L_TYPE_HARD) {
ret = 2;
goto out;
} /* end if */
/* trg_path must be freed out of this function when finished using */
link_info->trg_path = (char*)HDcalloc(link_info->linfo.u.val_size, sizeof(char));
HDassert(link_info->trg_path);
/* get link value */
if(H5Lget_val(file_id, linkpath, (void *)link_info->trg_path, link_info->linfo.u.val_size, H5P_DEFAULT) < 0) {
if(link_info->opt.msg_mode == 1)
parallel_print("Warning: unable to get link value from <%s>\n",linkpath);
goto out;
} /* end if */
/*-----------------------------------------------------
* if link type is external link use different lapl to
* follow object in other file
*/
if(link_info->linfo.type == H5L_TYPE_EXTERNAL) {
if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
goto out;
if(H5Pset_fapl_sec2(fapl) < 0)
goto out;
if((lapl = H5Pcreate(H5P_LINK_ACCESS)) < 0)
goto out;
if(H5Pset_elink_fapl(lapl, fapl) < 0)
goto out;
} /* end if */
/* Check for retrieving object info */
if(get_obj_type) {
/*--------------------------------------------------------------
* if link's target object exist, get type
*/
/* check if target object exist */
l_ret = H5Oexists_by_name(file_id, linkpath, lapl);
/* detect dangling link */
if(l_ret == FALSE) {
ret = 0;
goto out;
} /* end if */
/* function failed */
else if(l_ret < 0)
goto out;
/* get target object info */
if(H5Oget_info_by_name(file_id, linkpath, &trg_oinfo, lapl) < 0) {
if(link_info->opt.msg_mode == 1)
parallel_print("Warning: unable to get object information for <%s>\n", linkpath);
goto out;
} /* end if */
/* check unknown type */
if(trg_oinfo.type < H5O_TYPE_GROUP || trg_oinfo.type >=H5O_TYPE_NTYPES) {
if(link_info->opt.msg_mode == 1)
parallel_print("Warning: target object of <%s> is unknown type\n", linkpath);
goto out;
} /* end if */
/* set target obj type to return */
link_info->trg_type = trg_oinfo.type;
link_info->objno = trg_oinfo.addr;
link_info->fileno = trg_oinfo.fileno;
} /* end if */
else
link_info->trg_type = H5O_TYPE_UNKNOWN;
/* succeed */
ret = 1;
out:
if(fapl != H5P_DEFAULT)
H5Pclose(fapl);
if(lapl != H5P_DEFAULT)
H5Pclose(lapl);
return ret;
} /* end H5tools_get_symlink_info() */