Exemple #1
0
/*-------------------------------------------------------------------------
 * Function:    test_direct
 *
 * Purpose:     Tests the file handle interface for DIRECT I/O driver
 *
 * Return:      Success:        0
 *              Failure:        -1
 *
 * Programmer:  Raymond Lu
 *              Wednesday, 20 September 2006
 *
 *-------------------------------------------------------------------------
 */
static herr_t
test_direct(void)
{
#ifdef H5_HAVE_DIRECT
    hid_t       file=(-1), fapl, access_fapl = -1;
    hid_t	dset1=-1, dset2=-1, space1=-1, space2=-1;
    char        filename[1024];
    int         *fhandle=NULL;
    hsize_t     file_size;
    hsize_t	dims1[2], dims2[1];
    size_t	mbound;
    size_t	fbsize;
    size_t	cbsize;
    int		*points, *check, *p1, *p2;
    int		wdata2[DSET2_DIM] = {11,12,13,14};
    int		rdata2[DSET2_DIM];
    int		i, j, n;
#endif /*H5_HAVE_DIRECT*/

    TESTING("Direct I/O file driver");

#ifndef H5_HAVE_DIRECT
    SKIPPED();
    return 0;
#else /*H5_HAVE_DIRECT*/

    /* Set property list and file name for Direct driver.  Set memory alignment boundary
     * and file block size to 512 which is the minimum for Linux 2.6. */
    fapl = h5_fileaccess();
    if(H5Pset_fapl_direct(fapl, MBOUNDARY, FBSIZE, CBSIZE) < 0)
        TEST_ERROR;
    h5_fixname(FILENAME[5], fapl, filename, sizeof filename);

    /* Verify the file access properties */
    if(H5Pget_fapl_direct(fapl, &mbound, &fbsize, &cbsize) < 0)
        TEST_ERROR;
    if(mbound != MBOUNDARY || fbsize != FBSIZE || cbsize != CBSIZE)
	TEST_ERROR;

    if(H5Pset_alignment(fapl, (hsize_t)THRESHOLD, (hsize_t)FBSIZE) < 0)
	TEST_ERROR;

    H5E_BEGIN_TRY {
        file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
    } H5E_END_TRY;
    if(file<0) {
        H5Pclose (fapl);
        SKIPPED();
        printf("	Probably the file system doesn't support Direct I/O\n");
        return 0;
    }

    /* Retrieve the access property list... */
    if ((access_fapl = H5Fget_access_plist(file)) < 0)
        TEST_ERROR;

    /* ...and close the property list */
    if (H5Pclose(access_fapl) < 0)
        TEST_ERROR;

    /* Check file handle API */
    if(H5Fget_vfd_handle(file, H5P_DEFAULT, (void **)&fhandle) < 0)
        TEST_ERROR;
    if(*fhandle<0)
        TEST_ERROR;

    /* Check file size API */
    if(H5Fget_filesize(file, &file_size) < 0)
        TEST_ERROR;

    /* There is no guarantee of the number of metadata allocations, but it's
     * 4 currently and the size of the file should be between 3 & 4 file buffer
     * sizes..
     */
    if(file_size < (FBSIZE * 3) || file_size >= (FBSIZE * 4))
        TEST_ERROR;

    /* Allocate aligned memory for data set 1. For data set 1, everything is aligned including
     * memory address, size of data, and file address. */
    if(posix_memalign(&points, (size_t)FBSIZE, (size_t)(DSET1_DIM1*DSET1_DIM2*sizeof(int)))!=0)
        TEST_ERROR;

    if(posix_memalign(&check, (size_t)FBSIZE, (size_t)(DSET1_DIM1*DSET1_DIM2*sizeof(int)))!=0)
        TEST_ERROR;

    /* Initialize the dset1 */
    p1 = points;
    for(i = n = 0; i < DSET1_DIM1; i++)
	for(j = 0; j < DSET1_DIM2; j++)
	    *p1++ = n++;

    /* Create the data space1 */
    dims1[0] = DSET1_DIM1;
    dims1[1] = DSET1_DIM2;
    if((space1 = H5Screate_simple(2, dims1, NULL)) < 0)
        TEST_ERROR;

    /* Create the dset1 */
    if((dset1 = H5Dcreate2(file, DSET1_NAME, H5T_NATIVE_INT, space1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /* Write the data to the dset1 */
    if(H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0)
        TEST_ERROR;

    if(H5Dclose(dset1) < 0)
        TEST_ERROR;

    if((dset1 = H5Dopen2(file, DSET1_NAME, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /* Read the data back from dset1 */
    if(H5Dread(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0)
        TEST_ERROR;

    /* Check that the values read are the same as the values written */
    p1 = points;
    p2 = check;
    for(i = 0; i < DSET1_DIM1; i++)
	for(j = 0; j < DSET1_DIM2; j++)
	    if(*p1++ != *p2++) {
		H5_FAILED();
		printf("    Read different values than written in data set 1.\n");
		printf("    At index %d,%d\n", i, j);
        	TEST_ERROR;
	    } /* end if */

    /* Create the data space2. For data set 2, memory address and data size are not aligned. */
    dims2[0] = DSET2_DIM;
    if((space2 = H5Screate_simple(1, dims2, NULL)) < 0)
        TEST_ERROR;

    /* Create the dset2 */
    if((dset2 = H5Dcreate2(file, DSET2_NAME, H5T_NATIVE_INT, space2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /* Write the data to the dset1 */
    if(H5Dwrite(dset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata2) < 0)
        TEST_ERROR;

    if(H5Dclose(dset2) < 0)
        TEST_ERROR;

    if((dset2 = H5Dopen2(file, DSET2_NAME, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /* Read the data back from dset1 */
    if(H5Dread(dset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata2) < 0)
        TEST_ERROR;

    /* Check that the values read are the same as the values written */
    for(i = 0; i < DSET2_DIM; i++)
	if(wdata2[i] != rdata2[i]) {
	    H5_FAILED();
	    printf("    Read different values than written in data set 2.\n");
	    printf("    At index %d\n", i);
            TEST_ERROR;
	} /* end if */

    if(H5Sclose(space1) < 0)
        TEST_ERROR;
    if(H5Dclose(dset1) < 0)
        TEST_ERROR;
    if(H5Sclose(space2) < 0)
        TEST_ERROR;
    if(H5Dclose(dset2) < 0)
        TEST_ERROR;
    if(H5Fclose(file) < 0)
        TEST_ERROR;
    if(points)
	free(points);
    if(check)
	free(check);

    h5_cleanup(FILENAME, fapl);
    PASSED();
    return 0;

error:
    H5E_BEGIN_TRY {
        H5Pclose (fapl);
        H5Sclose(space1);
        H5Dclose(dset1);
        H5Sclose(space2);
        H5Dclose(dset2);
        H5Fclose(file);
    } H5E_END_TRY;
    return -1;
#endif /*H5_HAVE_DIRECT*/
}
Exemple #2
0
herr_t pt_H5Pset_fapl_direct(hid_t fapl_id, size_t alignment,
                             size_t block_size, size_t cbuf_size)
{
 return H5Pset_fapl_direct(fapl_id, alignment, block_size, cbuf_size);
}
Exemple #3
0
/*-------------------------------------------------------------------------
 * Function:  h5_fileaccess
 *
 * Purpose:  Returns a file access template which is the default template
 *    but with a file driver set according to the constant or
 *    environment variable HDF5_DRIVER
 *
 * Return:  Success:  A file access property list
 *
 *    Failure:  -1
 *
 * Programmer:  Robb Matzke
 *              Thursday, November 19, 1998
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
hid_t
h5_fileaccess(void)
{
    const char  *val = NULL;
    const char  *name;
    char s[1024];
    hid_t fapl = -1;

    /* First use the environment variable, then the constant */
    val = HDgetenv("HDF5_DRIVER");
#ifdef HDF5_DRIVER
    if (!val)
        val = HDF5_DRIVER;
#endif

    if ((fapl=H5Pcreate(H5P_FILE_ACCESS))<0)
        return -1;
    if (!val || !*val)
        return fapl; /*use default*/

    HDstrncpy(s, val, sizeof s);
    s[sizeof(s)-1] = '\0';
    if (NULL==(name=HDstrtok(s, " \t\n\r"))) return fapl;

    if (!HDstrcmp(name, "sec2")) {
        /* Unix read() and write() system calls */
        if (H5Pset_fapl_sec2(fapl)<0) return -1;
    } else if (!HDstrcmp(name, "stdio")) {
        /* Standard C fread() and fwrite() system calls */
        if (H5Pset_fapl_stdio(fapl)<0) return -1;
    } else if (!HDstrcmp(name, "core")) {
        /* In-memory driver settings (backing store on, 1 MB increment) */
        if (H5Pset_fapl_core(fapl, (size_t)1, TRUE)<0) return -1;
    } else if (!HDstrcmp(name, "core_paged")) {
        /* In-memory driver with write tracking and paging on */
        if (H5Pset_fapl_core(fapl, (size_t)1, TRUE)<0) return -1;
        if (H5Pset_core_write_tracking(fapl, TRUE, (size_t)4096)<0) return -1;
     } else if (!HDstrcmp(name, "split")) {
        /* Split meta data and raw data each using default driver */
        if (H5Pset_fapl_split(fapl,
            "-m.h5", H5P_DEFAULT,
            "-r.h5", H5P_DEFAULT)<0)
            return -1;
    } else if (!HDstrcmp(name, "multi")) {
        /* Multi-file driver, general case of the split driver */
        H5FD_mem_t memb_map[H5FD_MEM_NTYPES];
        hid_t memb_fapl[H5FD_MEM_NTYPES];
        const char *memb_name[H5FD_MEM_NTYPES];
        char sv[H5FD_MEM_NTYPES][1024];
        haddr_t memb_addr[H5FD_MEM_NTYPES];
        H5FD_mem_t  mt;

        HDmemset(memb_map, 0, sizeof memb_map);
        HDmemset(memb_fapl, 0, sizeof memb_fapl);
        HDmemset(memb_name, 0, sizeof memb_name);
        HDmemset(memb_addr, 0, sizeof memb_addr);

        HDassert(HDstrlen(multi_letters)==H5FD_MEM_NTYPES);
        for(mt = H5FD_MEM_DEFAULT; mt < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, mt)) {
          memb_fapl[mt] = H5P_DEFAULT;
            sprintf(sv[mt], "%%s-%c.h5", multi_letters[mt]);
            memb_name[mt] = sv[mt];
            memb_addr[mt] = (haddr_t)MAX(mt - 1, 0) * (HADDR_MAX / 10);
        } /* end for */

        if (H5Pset_fapl_multi(fapl, memb_map, memb_fapl, memb_name,
          memb_addr, FALSE)<0) {
            return -1;
        }
    } else if (!HDstrcmp(name, "family")) {
        hsize_t fam_size = 100*1024*1024; /*100 MB*/

        /* Family of files, each 1MB and using the default driver */
        if ((val=HDstrtok(NULL, " \t\n\r")))
            fam_size = (hsize_t)(HDstrtod(val, NULL) * 1024*1024);
        if (H5Pset_fapl_family(fapl, fam_size, H5P_DEFAULT)<0)
            return -1;
    } else if (!HDstrcmp(name, "log")) {
        unsigned log_flags = H5FD_LOG_LOC_IO | H5FD_LOG_ALLOC;

        /* Log file access */
        if ((val = HDstrtok(NULL, " \t\n\r")))
            log_flags = (unsigned)HDstrtol(val, NULL, 0);

        if (H5Pset_fapl_log(fapl, NULL, log_flags, (size_t)0) < 0)
            return -1;
    } else if (!HDstrcmp(name, "direct")) {
#ifdef H5_HAVE_DIRECT
        /* Linux direct read() and write() system calls.  Set memory boundary, file block size,
         * and copy buffer size to the default values. */
        if (H5Pset_fapl_direct(fapl, 1024, 4096, 8*4096)<0)
            return -1;
#endif
    } else if(!HDstrcmp(name, "latest")) {
        /* use the latest format */
        if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
            return -1;
    } else {
        /* Unknown driver */
        return -1;
    }

    return fapl;
}
Exemple #4
0
hid_t
set_vfd(parameters *param)
{
    hid_t my_fapl = -1;
    vfdtype  vfd;

    vfd = param->vfd;

    if ((my_fapl=H5Pcreate(H5P_FILE_ACCESS))<0) return -1;

    if (vfd == sec2) {
        /* Unix read() and write() system calls */
        if (H5Pset_fapl_sec2(my_fapl)<0) return -1;
    } else if (vfd == stdio) {
        /* Standard C fread() and fwrite() system calls */
        if (H5Pset_fapl_stdio(my_fapl)<0) return -1;
    } else if (vfd == core) {
        /* In-core temporary file with 1MB increment */
        if (H5Pset_fapl_core(my_fapl, (size_t)1024*1024, TRUE)<0) return -1;
    } else if (vfd == split) {
        /* Split meta data and raw data each using default driver */
        if (H5Pset_fapl_split(my_fapl,
                              "-m.h5", H5P_DEFAULT,
                              "-r.h5", H5P_DEFAULT)<0)
            return -1;
    } else if (vfd == multi) {
        /* Multi-file driver, general case of the split driver */
        H5FD_mem_t memb_map[H5FD_MEM_NTYPES];
        hid_t memb_fapl[H5FD_MEM_NTYPES];
        const char *memb_name[H5FD_MEM_NTYPES];
        char sv[H5FD_MEM_NTYPES][1024];
        haddr_t memb_addr[H5FD_MEM_NTYPES];
        H5FD_mem_t      mt;

        HDmemset(memb_map, 0, sizeof memb_map);
        HDmemset(memb_fapl, 0, sizeof memb_fapl);
        HDmemset(memb_name, 0, sizeof memb_name);
        HDmemset(memb_addr, 0, sizeof memb_addr);

        HDassert(HDstrlen(multi_letters)==H5FD_MEM_NTYPES);
        for (mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t,mt)) {
            memb_fapl[mt] = H5P_DEFAULT;
            sprintf(sv[mt], "%%s-%c.h5", multi_letters[mt]);
            memb_name[mt] = sv[mt];
            memb_addr[mt] = (haddr_t)MAX(mt - 1,0) * (HADDR_MAX / 10);
        }

        if (H5Pset_fapl_multi(my_fapl, memb_map, memb_fapl, memb_name,
                              memb_addr, FALSE)<0) {
            return -1;
        }
    } else if (vfd == family) {
        hsize_t fam_size = 1*1024*1024; /*100 MB*/

        /* Family of files, each 1MB and using the default driver */
        /* if ((val=HDstrtok(NULL, " \t\n\r")))
            fam_size = (hsize_t)(HDstrtod(val, NULL) * 1024*1024); */
        if (H5Pset_fapl_family(my_fapl, fam_size, H5P_DEFAULT)<0)
            return -1;
    } else if (vfd == direct) {
#ifdef H5_HAVE_DIRECT
        /* Linux direct read() and write() system calls.  Set memory boundary, file block size,
         * and copy buffer size to the default values. */
        if (H5Pset_fapl_direct(my_fapl, 1024, 4096, 8*4096)<0) return -1;
#endif
    } else {
        /* Unknown driver */
        return -1;
    }

    return my_fapl;
}