Exemple #1
0
/*-------------------------------------------------------------------------
 * Function:	main
 *
 * Purpose:	Part 1 of a two-part H5Fflush() test.
 *
 * Return:	Success:	0
 *
 *		Failure:	1
 *
 * Programmer:	Robb Matzke
 *              Friday, October 23, 1998
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
int
main(void)
{
    hid_t	fapl, file, dcpl, space, dset, groups, grp;
    hsize_t	ds_size[2] = {100, 100};
    hsize_t	ch_size[2] = {5, 5};
    size_t	i, j;
    char	name[1024];

    h5_reset();
    fapl = h5_fileaccess();

    TESTING("H5Fflush (part1)");

    /* Create the file */
    h5_fixname(FILENAME[0], fapl, name, sizeof name);
    if ((file=H5Fcreate(name, H5F_ACC_TRUNC, H5P_DEFAULT, fapl))<0) goto error;

    /* Create a chunked dataset */
    if ((dcpl=H5Pcreate(H5P_DATASET_CREATE))<0) goto error;
    if (H5Pset_chunk(dcpl, 2, ch_size)<0) goto error;
    if ((space=H5Screate_simple(2, ds_size, NULL))<0) goto error;
    if ((dset=H5Dcreate(file, "dset", H5T_NATIVE_FLOAT, space, H5P_DEFAULT))<0)
	goto error;

    /* Write some data */
    for (i=0; i<ds_size[0]; i++) {
	/*
	 * The extra cast in the following statement is a bug workaround
	 * for the Win32 version 5.0 compiler.
	 * 1998-11-06 ptl
	 */
	for (j=0; j<ds_size[1]; j++) {
	    the_data[i][j] = (double)(hssize_t)i/(hssize_t)(j+1);
	}
    }
    if (H5Dwrite(dset, H5T_NATIVE_DOUBLE, space, space, H5P_DEFAULT,
		 the_data)<0) goto error;

    /* Create some groups */
    if ((groups=H5Gcreate(file, "some_groups", 0))<0) goto error;
    for (i=0; i<100; i++) {
	sprintf(name, "grp%02u", (unsigned)i);
	if ((grp=H5Gcreate(groups, name, 0))<0) goto error;
	if (H5Gclose(grp)<0) goto error;
    }

    /* Flush and exit without closing the library */
    if (H5Fflush(file, H5F_SCOPE_GLOBAL)<0) goto error;
    PASSED();
    fflush(stdout);
    fflush(stderr);
    HD_exit(0);
    return 0;

 error:
    HD_exit(1);
    return 1;
}
Exemple #2
0
/*-------------------------------------------------------------------------
 * Function:    create_file
 *
 * Purpose:    Creates file used in part 1 of the test
 *
 * Return:    Success:    0
 *
 *        Failure:    1
 *
 * Programmer:    Leon Arber
 *              Sept. 26, 2006
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static hid_t
create_file(char* name, hid_t fapl)
{
    hid_t    file, dcpl, space, dset, groups, grp, plist;
    hsize_t    ds_size[2] = {100, 100};
    hsize_t    ch_size[2] = {5, 5};
    hsize_t    i, j;



    if((file=H5Fcreate(name, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) goto error;

    /* Create a chunked dataset */
    if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) goto error;
    if(H5Pset_chunk(dcpl, 2, ch_size) < 0) goto error;
    if((space = H5Screate_simple(2, ds_size, NULL)) < 0) goto error;
    if((dset = H5Dcreate2(file, "dset", H5T_NATIVE_FLOAT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
    goto error;

    plist = H5Pcreate(H5P_DATASET_XFER);
    H5Pset_dxpl_mpio(plist, H5FD_MPIO_COLLECTIVE);


    /* Write some data */
    for(i = 0; i < ds_size[0]; i++) {
    /*
    * The extra cast in the following statement is a bug workaround
    * for the Win32 version 5.0 compiler.
    * 1998-11-06 ptl
    */
    for(j = 0; j < ds_size[1]; j++)
        the_data[i][j] = (double)(hssize_t)i/(hssize_t)(j+1);
    }
    if(H5Dwrite(dset, H5T_NATIVE_DOUBLE, space, space, plist, the_data) < 0) goto error;

    /* Create some groups */
    if((groups = H5Gcreate2(file, "some_groups", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto error;
    for(i = 0; i < 100; i++) {
    sprintf(name, "grp%02u", (unsigned)i);
    if((grp = H5Gcreate2(groups, name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto error;
    if(H5Gclose(grp) < 0) goto error;
    }

    return file;

error:
    HD_exit(1);
}
Exemple #3
0
/*-------------------------------------------------------------------------
 * Function:    main
 *
 * Purpose:    Part 1 of a two-part H5Fflush() test.
 *
 * Return:    Success:    0
 *
 *        Failure:    1
 *
 * Programmer:    Robb Matzke
 *              Friday, October 23, 1998
 *
 * Modifications:
 *         Leon Arber
 *         Sept. 26, 2006, expand test to check for failure if H5Fflush is not called.
 *
 *
 *-------------------------------------------------------------------------
 */
int
main(int argc, char* argv[])
{
    hid_t file1, file2, fapl;
    MPI_File    *mpifh_p = NULL;
    char    name[1024];
    const char  *envval = NULL;
    int mpi_size, mpi_rank;
    MPI_Comm comm  = MPI_COMM_WORLD;
    MPI_Info info  = MPI_INFO_NULL;

    MPI_Init(&argc, &argv);
    MPI_Comm_size(comm, &mpi_size);
    MPI_Comm_rank(comm, &mpi_rank);

    fapl = H5Pcreate(H5P_FILE_ACCESS);
    H5Pset_fapl_mpio(fapl, comm, info);

    if(mpi_rank == 0)
    TESTING("H5Fflush (part1)");
    envval = HDgetenv("HDF5_DRIVER");
    if(envval == NULL)
        envval = "nomatch";
    if(HDstrcmp(envval, "split")) {
    /* Create the file */
    h5_fixname(FILENAME[0], fapl, name, sizeof name);
    file1 = create_file(name, fapl);
    /* Flush and exit without closing the library */
    if(H5Fflush(file1, H5F_SCOPE_GLOBAL) < 0) goto error;

    /* Create the other file which will not be flushed */
    h5_fixname(FILENAME[1], fapl, name, sizeof name);
    file2 = create_file(name, fapl);


    if(mpi_rank == 0)
        PASSED();
    fflush(stdout);
    fflush(stderr);
    } /* end if */
    else {
        SKIPPED();
        puts("    Test not compatible with current Virtual File Driver");
    } /* end else */

    /*
     * Some systems like AIX do not like files not closed when MPI_Finalize
     * is called.  So, we need to get the MPI file handles, close them by hand.
     * Then the _exit is still needed to stop at_exit from happening in some systems.
     * Note that MPIO VFD returns the address of the file-handle in the VFD struct
     * because MPI_File_close wants to modify the file-handle variable.
     */

    /* close file1 */
    if(H5Fget_vfd_handle(file1, fapl, (void **)&mpifh_p) < 0) {
    printf("H5Fget_vfd_handle for file1 failed\n");
    goto error;
    } /* end if */
    if(MPI_File_close(mpifh_p) != MPI_SUCCESS) {
    printf("MPI_File_close for file1 failed\n");
    goto error;
    } /* end if */
    /* close file2 */
    if(H5Fget_vfd_handle(file2, fapl, (void **)&mpifh_p) < 0) {
    printf("H5Fget_vfd_handle for file2 failed\n");
    goto error;
    } /* end if */
    if(MPI_File_close(mpifh_p) != MPI_SUCCESS) {
    printf("MPI_File_close for file2 failed\n");
    goto error;
    } /* end if */

    fflush(stdout);
    fflush(stderr);
    HD_exit(0);

error:
    fflush(stdout);
    fflush(stderr);
    HD_exit(1);
}
Exemple #4
0
/*-------------------------------------------------------------------------
 * Function:	main
 *
 * Purpose:	To create HDF5 files with non-zero status_flags in the superblock
 *		via flushing and exiting without closing the library.
 *
 *		Due to file locking, status_flag in the superblock will be 
 *		nonzero after H5Fcreate.  The library will clear status_flags
 *		on file closing.  This program, after "H5Fcreate" the files,
 *		exits without going through library closing. Thus, status_flags
 *		for these files are not cleared and users cannot open them.
 *
 *		These files are used by "h5clear" to see if the tool clears
 *		status_flags properly so users can open the files afterwards.
 *
 * Return:	Success:	0
 *		Failure:	1
 *
 * Programmer:	Vailin Choi; July 2013
 *
 *-------------------------------------------------------------------------
 */
int
main(void)
{
    hid_t fid;			/* File ID */
    hid_t fapl, new_fapl;	/* File access property lists */
    char fname[512];		/* File name */
    hbool_t new_format;		/* To use latest library format or not */
    int fd;			/* File descriptor */
    uint8_t super_vers;		/* Superblock version */
    ssize_t bytes_written;	/* The # of bytes written to the file */

    /* Create a copy of the file access property list */
    if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
	goto error;

    /* Copy the file access property list */
    if((new_fapl = H5Pcopy(fapl)) < 0)
	goto error;
    /* Set to latest library format */
    if(H5Pset_libver_bounds(new_fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
	goto error;

    /* Create file with/without latest library format */
    for(new_format = FALSE; new_format <= TRUE; new_format++) {
	hid_t fapl2, my_fapl;	/* File access property lists */

	/* Set to use the appropriate file access property list */
	if(new_format)
	    fapl2 = new_fapl;
	else
	    fapl2 = fapl;
	/*
	 * Create a sec2 file
	 */
	if((my_fapl = H5Pcopy(fapl2)) < 0)
	    goto error;
	/* Create the file */
	sprintf(fname, "%s%s", new_format? "latest_":"", FILENAME[0]);
	if((fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, my_fapl)) < 0) 
	    goto error;

	/* Flush the file */
	if(H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0)
	    goto error;
    
	/* Close the property list */
	if(H5Pclose(my_fapl) < 0)
	    goto error;

	/*
	 * Create a core file
	 */
	/* Create a copy of file access property list */
	if((my_fapl = H5Pcopy(fapl2)) < 0)
	    goto error;

	/* Setup the fapl for the family file driver */
	if(H5Pset_fapl_core(my_fapl, (size_t)CORE_INCREMENT, TRUE) < 0)
	    goto error;

	/* Create the file */
	sprintf(fname, "%s%s", new_format? "latest_":"", FILENAME[1]);
	if((fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, my_fapl)) < 0) 
	    goto error;

	/* Flush the file */
	if(H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0)
	    goto error;

	/* Close the property list */
	if(H5Pclose(my_fapl) < 0)
	    goto error;

	/*
	 * Create a family file
	 */
	/* Create a copy of file access property list */
	if((my_fapl = H5Pcopy(fapl2)) < 0)
	    goto error;

	/* Setup the fapl for the family file driver */
	if(H5Pset_fapl_family(my_fapl, (hsize_t)FAMILY_SIZE, H5P_DEFAULT) < 0)
	    goto error;

	/* Create the file */
	sprintf(fname, "%s%s", new_format? "latest_":"", FILENAME[2]);
	if((fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, my_fapl)) < 0) 
	    goto error;

	/* Flush the file */
	if(H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0)
	    goto error;

	/* Close the property list */
	if(H5Pclose(my_fapl) < 0)
	    goto error;

	/*
	 * Create a split file
	 */
	 /* Create a copy of file access property list */
	my_fapl = H5Pcopy(fapl2);

	/* Setup the fapl for the split file driver */
	H5Pset_fapl_split(my_fapl, "-m.h5", H5P_DEFAULT, "-r.h5", H5P_DEFAULT);

	/* Create the file */
	sprintf(fname, "%s%s", new_format? "latest_":"", FILENAME[3]);
	if((fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, my_fapl)) < 0)
	    goto error;

	/* Flush the file */
	if(H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0)
	    goto error;

	/* Close the property list */
	if(H5Pclose(my_fapl) < 0)
	    goto error;

	/* 
	 * Create a sec2 file but change its superblock version # 
	 */
	/* Create a copy of file access property list */
	if((my_fapl = H5Pcopy(fapl2)) < 0)
	    goto error;
	/* Create the file */
	sprintf(fname, "%s%s", new_format? "latest_":"", FILENAME[4]);
	if((fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, my_fapl)) < 0) 
	    goto error;

	/* Flush the file */
	if(H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0)
	    goto error;
    
	/* Close the property list */
	if(H5Pclose(my_fapl) < 0)
	    goto error;

	/* Open the test file via system call "open" */
	if((fd = HDopen(fname, O_RDWR, 0666)) < 0) {
	    HDfprintf(stdout, "cannot open the file\n");
	    goto error;
	}

	/* Position the file to superblock version via system call "lseek" */
	if(HDlseek(fd, (off_t)SUPER_VERS_OFF, SEEK_SET) < 0) {
	    HDfprintf(stdout, "cannot lseek the file superblock version\n");
	    goto error;
	}

	/* Change to an incorrect superblock version */
	super_vers = SUPER_VERS_LATEST + 1;
	/* Write to the file via system call "write" */
	if((bytes_written = HDwrite(fd, &super_vers, (size_t)SUPER_VERS_SIZE)) < 0) {
	    HDfprintf(stdout, "cannot write to the file with incorrect superblock version\n");
	    goto error;
	}

	/* Close the file via system call "close" */
	if(HDclose(fd) < 0) {
	    HDfprintf(stdout, "cannot close the file\n");
	    goto error;
	}

    } /* end for */

    /* Close the property lists */
    if(H5Pclose(fapl) < 0)
	goto error;
    if(H5Pclose(new_fapl) < 0)
	goto error;

    fflush(stdout);
    fflush(stderr);

    /* Not going through library closing by calling _exit(0) with success */
    HD_exit(0);

error:

    /* Exit with failure */
    HD_exit(1);
}