int main ( int argc, char *argv [] )
{
if ( argc < 2 )
printf ( "Usage: %s database [ table [ col ... ] ]\n", argv [ 0 ] );
else
{
const KDBManager *mgr;
rc_t rc = KDBManagerMakeRead ( & mgr, NULL );
if ( rc == 0 )
{
const KDatabase *db;
rc = KDBManagerOpenDBRead ( mgr, & db, "%s", argv [ 1 ] );
if ( rc != 0 )
fprintf ( stderr, "failed to open database '%s'\n", argv [ 1 ] );
else
{
dump_db ( db, argc, argv );
KDatabaseRelease ( db );
}
KDBManagerRelease ( mgr );
}
}
return 0;
}
static rc_t pacbio_make_alias( VDatabase * vdb_db,
const char *existing_obj, const char *alias_to_create )
{
KDatabase *kdb;
rc_t rc = VDatabaseOpenKDatabaseUpdate ( vdb_db, & kdb );
if ( rc == 0 )
{
rc = KDatabaseAliasTable ( kdb, existing_obj, alias_to_create );
KDatabaseRelease ( kdb );
}
return rc;
}
rc_t correct( const char * obj )
{
KDirectory * dir;
rc_t rc = KDirectoryNativeDir( &dir );
if ( rc != 0 )
{
LOGERR( klogErr, rc, "creation of KDirectory failed" );
}
else
{
VDBManager * vdb_mgr;
rc = VDBManagerMakeUpdate ( &vdb_mgr, dir );
if ( rc != 0 )
{
LOGERR( klogErr, rc, "creation of VDBManager failed" );
}
else
{
VDatabase * vdb_db;
rc = VDBManagerOpenDBUpdate ( vdb_mgr, &vdb_db, NULL, "%s", obj );
if ( rc != 0 )
{
LOGERR( klogErr, rc, "vdb: open for update failed" );
}
else
{
KDatabase *kdb;
rc = VDatabaseOpenKDatabaseUpdate ( vdb_db, & kdb );
if ( rc != 0 )
{
LOGERR( klogErr, rc, "kdb: open for update failed" );
}
else
{
if ( KDatabaseExists ( kdb, kptTable, CONSENSUS ) )
{
if ( KDatabaseExists ( kdb, kptTable, PULSE ) )
{
OUTMSG(( "table >%s< does already exist in >%s<\n", PULSE, obj ));
}
else
{
if ( KDatabaseExists ( kdb, kptTable, SEQUENCE ) )
{
rc = KDatabaseRenameTable ( kdb, true, SEQUENCE, PULSE );
if ( rc != 0 )
{
LOGERR( klogErr, rc, "kdb: renaming table failed" );
}
else
{
OUTMSG(( "table >%s< renamed to >%s< in >%s<\n", SEQUENCE, PULSE, obj ));
}
if ( rc == 0 )
{
rc = KDatabaseAliasTable ( kdb, CONSENSUS, SEQUENCE );
if ( rc != 0 )
{
LOGERR( klogErr, rc, "kdb: creating table-alias failed" );
}
else
{
OUTMSG(( "alias >%s< created for >%s< in >%s<\n", SEQUENCE, CONSENSUS, obj ));
}
}
}
}
}
else
{
OUTMSG(( "table >%s< does not exist in >%s<\n", CONSENSUS, obj ));
}
KDatabaseRelease ( kdb );
}
VDatabaseRelease( vdb_db );
}
VDBManagerRelease( vdb_mgr );
}
KDirectoryRelease( dir );
}
return rc;
}
