C++ (Cpp) KineticLaw_isSetMath Exemples

Exemple #1

Fichier : TestKineticLaw.c Projet : sys-bio/libroadrunner-deps

END_TEST


/**
 * setMathFromFormula() is no longer necessary.  LibSBML now keeps formula
 * strings and math ASTs synchronized automatically.  This (now modified)
 * test is kept around to demonstrate the behavioral change.
 */
START_TEST (test_KineticLaw_setMathFromFormula)
{
  const char *initial_formula = "k3 / k2";
  char* formula;


  fail_unless( !KineticLaw_isSetMath   (kl) );
  fail_unless( !KineticLaw_isSetFormula(kl) );


  KineticLaw_setFormula(kl, initial_formula);
  fail_unless( KineticLaw_isSetMath   (kl) );
  fail_unless( KineticLaw_isSetFormula(kl) );

  formula = SBML_formulaToString( KineticLaw_getMath(kl) );

  fail_unless( !strcmp(formula, initial_formula) );

  safe_free(formula);
}

Exemple #2

Fichier : TestKineticLaw_newSetters.c Projet : mgaldzic/copasi_api

END_TEST


START_TEST (test_KineticLaw_setMath1)
{
  ASTNode_t *math = ASTNode_createWithType(AST_TIMES);
  ASTNode_t *a = ASTNode_create();
  ASTNode_t *b = ASTNode_create();
  ASTNode_setName(a, "a");
  ASTNode_setName(b, "b");
  ASTNode_addChild(math, a);
  ASTNode_addChild(math, b);
  char *formula;
  const ASTNode_t *math1;

  int i = KineticLaw_setMath(kl, math);

  fail_unless( i == LIBSBML_OPERATION_SUCCESS);
  fail_unless( KineticLaw_isSetMath(kl)   );

  math1 = KineticLaw_getMath(kl);
  fail_unless( math1 != NULL );

  formula = SBML_formulaToString(math1);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "a * b") );

  ASTNode_free(math);
}

Exemple #3

Fichier : TestKineticLaw.c Projet : sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_KineticLaw_setMath)
{
  ASTNode_t *math = SBML_parseFormula("k3 / k2");
  char *formula;
  const ASTNode_t *math1;


  KineticLaw_setMath(kl, math);

  math1 = KineticLaw_getMath(kl);
  fail_unless( math1 != NULL );

  formula = SBML_formulaToString(math1);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "k3 / k2") );
  fail_unless( KineticLaw_getMath(kl) != math );
  fail_unless( KineticLaw_isSetMath(kl) );
  safe_free(formula);

  /* Reflexive case (pathological) */
  KineticLaw_setMath(kl, (ASTNode_t *) KineticLaw_getMath(kl));
  math1 = KineticLaw_getMath(kl);
  fail_unless( math1 != NULL );

  formula = SBML_formulaToString(math1);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "k3 / k2") );
  fail_unless( KineticLaw_getMath(kl) != math );
  safe_free(formula);

  KineticLaw_setMath(kl, NULL);
  fail_unless( !KineticLaw_isSetMath(kl) );

  if (KineticLaw_getMath(kl) != NULL)
  {
    fail( "KineticLaw_setMath(kl, NULL) did not clear ASTNode." );
  }

  ASTNode_free(math);
}

Exemple #4

Fichier : TestKineticLaw_newSetters.c Projet : mgaldzic/copasi_api

END_TEST


START_TEST (test_KineticLaw_setMath3)
{
  int i = KineticLaw_setMath(kl, NULL);

  fail_unless( i == LIBSBML_OPERATION_SUCCESS);
  fail_unless( !KineticLaw_isSetMath(kl)   );
}

Exemple #5

Fichier : TestKineticLaw.c Projet : sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_KineticLaw_setBadFormula)
{
 const char *formula = "k1 X0";


  KineticLaw_setFormula(kl, formula);

  fail_unless( !KineticLaw_isSetFormula(kl)   );
  fail_unless( !KineticLaw_isSetMath(kl)   );

}

Exemple #6

Fichier : TestKineticLaw.c Projet : sys-bio/libroadrunner-deps

END_TEST


/**
 * setFormulaFromMath() is no longer necessary.  LibSBML now keeps formula
 * strings and math ASTs synchronized automatically.  This (now modified)
 * test is kept around to demonstrate the behavioral change.
 */
START_TEST (test_KineticLaw_setFormulaFromMath)
{
  ASTNode_t *math = SBML_parseFormula("k1 * X0");


  fail_unless( !KineticLaw_isSetMath   (kl) );
  fail_unless( !KineticLaw_isSetFormula(kl) );

  KineticLaw_setMath(kl, math);
  fail_unless(  KineticLaw_isSetMath(kl) );
  fail_unless( KineticLaw_isSetFormula(kl) );

  fail_unless( !strcmp(KineticLaw_getFormula(kl), "k1 * X0") );

  ASTNode_free(math);
}

Exemple #7

Fichier : TestKineticLaw_newSetters.c Projet : mgaldzic/copasi_api

END_TEST


START_TEST (test_KineticLaw_setMath2)
{
  ASTNode_t *math = ASTNode_createWithType(AST_TIMES);
  ASTNode_t *a = ASTNode_create();
  ASTNode_setName(a, "a");
  ASTNode_addChild(math, a);

  int i = KineticLaw_setMath(kl, math);

  fail_unless( i == LIBSBML_INVALID_OBJECT);
  fail_unless( !KineticLaw_isSetMath(kl)   );

  ASTNode_free(math);
}

Exemple #8

Fichier : printMath.c Projet : 0u812/roadrunner-backup

void
printReactionMath (unsigned int n, Reaction_t *r)
{
  char         *formula;
  KineticLaw_t *kl;


  if (Reaction_isSetKineticLaw(r))
  {
    kl = Reaction_getKineticLaw(r);

    if ( KineticLaw_isSetMath(kl) )
    {
      formula = SBML_formulaToString( KineticLaw_getMath(kl) );
      printf("Reaction %d, formula: %s\n", n, formula);
      free(formula);
    }
  }
}

Exemple #9

Fichier : drawMath.c Projet : copasi/copasi-dependencies

void
printReactionMath (unsigned int n, Reaction_t *r)
{
  char         *formula;
  KineticLaw_t *kl;


  if (Reaction_isSetKineticLaw(r))
  {
    kl = Reaction_getKineticLaw(r);

    if ( KineticLaw_isSetMath(kl) )
    {
      formula = SBML_formulaToDot( KineticLaw_getMath(kl) );
      fprintf(fout, "subgraph cluster%u {\n", noClusters);
      fprintf(fout, "label=\"Reaction: %s\";\n%s\n", Reaction_getId(r), formula);
      free(formula);
      noClusters++;
    }
  }
}