int MESH_ConcatSubMesh_Face(Mesh_ptr mesh, int num, Mesh_ptr *submeshes) {
int nfv, nfe, i, j, k, ival;
MVertex_ptr mv, new_mv, sub_mv;
MEdge_ptr me, new_me, sub_me;
MFace_ptr new_mf, sub_mf;
List_ptr mfverts, mfedges;
int add_face, idx, global_id, iloc, *loc;
double coor[3], rval;
void *pval;
Mesh_ptr submesh;
List_ptr parbndry_verts = List_New(10);
List_ptr parbndry_edges = List_New(10);
MEdge_ptr *fedges = (MEdge_ptr *) malloc(MAXPV2*sizeof(MEdge_ptr));
int *fedirs = (int *) malloc(MAXPV2*sizeof(int));
MAttrib_ptr parbndryatt = MAttrib_New(mesh, "on_parbndry", INT, MVERTEX);
/* collect edges and vertices on the partition boundary */
int num_parbndry_edges = 0;
idx = 0;
while ((me = MESH_Next_Edge(mesh,&idx)))
if (ME_PType(me) != PINTERIOR) {
List_Add(parbndry_edges,me);
num_parbndry_edges++;
}
int num_parbndry_verts = 0;
idx = 0;
while ((mv = MESH_Next_Vertex(mesh,&idx)))
if (MV_PType(mv) != PINTERIOR) {
List_Add(parbndry_verts,mv);
MEnt_Set_AttVal(mv, parbndryatt, 1, 0.0, NULL);
num_parbndry_verts++;
}
/* sort based on global ID */
List_Sort(parbndry_edges,num_parbndry_edges,sizeof(MEdge_ptr),compareGlobalID);
List_Sort(parbndry_verts,num_parbndry_verts,sizeof(MVertex_ptr),compareGlobalID);
int *parbndry_vert_gids = (int *) malloc(num_parbndry_verts*sizeof(int));
int *parbndry_edge_gids = (int *) malloc(num_parbndry_edges*sizeof(int));
/* store them in array for binary search */
for (i = 0; i < num_parbndry_edges; i++) {
me = List_Entry(parbndry_edges,i);
parbndry_edge_gids[i] = ME_GlobalID(me);
}
for (i = 0; i < num_parbndry_verts; i++) {
mv = List_Entry(parbndry_verts,i);
parbndry_vert_gids[i] = MV_GlobalID(mv);
}
/* Make list of new edges and vertices which will be updated
with each mesh that is concatenated */
int max_vnew = 0, max_enew = 0;
for (i = 0; i < num; i++) {
max_vnew += MESH_Num_Vertices(submeshes[i]);
max_enew += MESH_Num_Edges(submeshes[i]);
}
int num_new_verts = 0, num_new_edges = 0;
int *new_vert_gids = (int *) malloc(max_vnew*sizeof(int));
int *new_edge_gids = (int *) malloc(max_enew*sizeof(int));
List_ptr new_verts = List_New(max_vnew);
List_ptr new_edges = List_New(max_enew);
/* Now process each mesh and add a layer of ghost elements from
each of them to the main partition */
for (i = 0; i < num; i++) {
submesh = submeshes[i];
MAttrib_ptr vidatt = MAttrib_New(submesh, "tempvid", POINTER, MVERTEX);
MAttrib_ptr eidatt = MAttrib_New(submesh, "tempeid", POINTER, MEDGE);
idx = 0;
while ((sub_mf = MESH_Next_Face(submesh, &idx))) {
add_face = 0;
/* Find matching vertices between the submesh and main mesh */
mfverts = MF_Vertices(sub_mf,1,0);
nfv = List_Num_Entries(mfverts);
for (j = 0; j < nfv; j++) {
sub_mv = List_Entry(mfverts,j);
/* Does the vertex have a known counterpart on the partition
* boundary of the main mesh? */
MEnt_Get_AttVal(sub_mv, vidatt, &ival, &rval, &mv);
if (mv) {
int on_parbndry=0;
MEnt_Get_AttVal(mv, parbndryatt, &on_parbndry, &rval, &pval);
if (on_parbndry)
add_face = 1;
} else {
/* Does the global ID of this vertex of the sub mesh face
* match the global ID of a partition boundary vertex in
* the main mesh? */
global_id = MV_GlobalID(sub_mv);
loc = (int *) bsearch(&global_id, parbndry_vert_gids, num_parbndry_verts, sizeof(int),
compareINT);
if (loc) { /* found a match */
add_face = 1;
iloc = loc - parbndry_vert_gids;
mv = List_Entry(parbndry_verts,iloc);
/* here set the ghost vertex property, only necessary when the input submeshes are not consistent */
if (MV_PType(mv) == PGHOST && MV_PType(sub_mv) != PGHOST) {
MV_Set_GEntDim(mv,MV_GEntDim(sub_mv));
MV_Set_GEntID(mv,MV_GEntID(sub_mv));
}
MEnt_Set_AttVal(sub_mv, vidatt, 0, 0.0, mv);
}
}
}
List_Delete(mfverts);
/* Find matching edges between the submesh and main mesh */
mfedges = MF_Edges(sub_mf,1,0);
nfe = List_Num_Entries(mfedges);
for (j = 0; j < nfe; j++) {
sub_me = List_Entry(mfedges,j);
/* Does the edge have a known counterpart on the partition
* boundary of the main mesh */
MEnt_Get_AttVal(sub_me, eidatt, &ival, &rval, &me);
if (!me) {
/* Does the global ID of this edge of the sub mesh face
* match the global ID of a partition boundary edge in the
* main mesh? */
global_id = ME_GlobalID(sub_me);
loc = (int *) bsearch(&global_id, parbndry_edge_gids, num_parbndry_edges, sizeof(int),
compareINT);
if (loc) {
iloc = loc - parbndry_edge_gids;
me = List_Entry(parbndry_edges,iloc);
/* here set the ghost edge property, only necessary when the input submeshes are not consistent */
if (ME_PType(me) == PGHOST && ME_PType(sub_me) != PGHOST) {
ME_Set_GEntDim(me,ME_GEntDim(sub_me));
ME_Set_GEntID(me,ME_GEntID(sub_me));
}
MEnt_Set_AttVal(sub_me, eidatt, 0, 0.0, me);
}
}
}
if (!add_face) {
List_Delete(mfedges);
continue;
}
new_mf = MF_New(mesh); /* add face */
MF_Set_GEntDim(new_mf,MF_GEntDim(sub_mf));
MF_Set_GEntID(new_mf,MF_GEntID(sub_mf));
MF_Set_PType(new_mf,PGHOST);
MF_Set_MasterParID(new_mf,MF_MasterParID(sub_mf));
MF_Set_GlobalID(new_mf,MF_GlobalID(sub_mf));
nfe = List_Num_Entries(mfedges);
for (j = 0; j < nfe; j++) {
sub_me = List_Entry(mfedges,j);
global_id = ME_GlobalID(sub_me);
fedirs[j] = MF_EdgeDir_i(sub_mf,j) == 1 ? 1 : 0;
new_me = NULL;
MEnt_Get_AttVal(sub_me, eidatt, &ival, &rval, &new_me);
if (!new_me) {
/* search in the ghost layer if another edge with
* this global ID has been added */
loc = (int *) bsearch(&global_id, new_edge_gids, num_new_edges,
sizeof(int), compareINT);
if (loc) {
iloc = loc - new_edge_gids;
new_me = List_Entry(new_edges, iloc);
MEnt_Set_AttVal(sub_me, eidatt, 0, 0.0, new_me);
}
}
if (new_me) {
if (MV_GlobalID(ME_Vertex(new_me,0)) != MV_GlobalID(ME_Vertex(sub_me,0)))
fedirs[j] = 1 - fedirs[j]; /* if the edge dir is not the same, reverse the edge dir */
} else { /* add a new edge to main mesh */
new_me = ME_New(mesh);
ME_Set_GEntDim(new_me,ME_GEntDim(sub_me));
ME_Set_GEntID(new_me,ME_GEntID(sub_me));
ME_Set_PType(new_me,PGHOST);
ME_Set_MasterParID(new_me,ME_MasterParID(sub_me));
ME_Set_GlobalID(new_me,ME_GlobalID(sub_me));
MEnt_Set_AttVal(sub_me, eidatt, 0, 0.0, new_me);
List_Add(new_edges, new_me);
for (k = 0; k < 2; k++) {
sub_mv = ME_Vertex(sub_me,k);
global_id = MV_GlobalID(sub_mv);
new_mv = NULL;
MEnt_Get_AttVal(sub_mv, vidatt, &ival, &rval, &new_mv);
if (!new_mv) {
/* search in the ghost layer if another vertex with
* this global ID has been added */
loc = (int *) bsearch(&global_id, new_vert_gids, num_new_verts,
sizeof(int), compareINT);
if (loc) {
iloc = loc - new_vert_gids;
new_mv = List_Entry(new_verts, iloc);
MEnt_Set_AttVal(sub_mv, vidatt, 0, 0.0, new_mv);
}
}
if (!new_mv) { /* add a new vertex to main mesh */
new_mv = MV_New(mesh);
MV_Set_GEntDim(new_mv,MV_GEntDim(sub_mv));
MV_Set_GEntID(new_mv,MV_GEntID(sub_mv));
MV_Set_PType(new_mv,PGHOST);
MV_Set_MasterParID(new_mv,MV_MasterParID(sub_mv));
MV_Set_GlobalID(new_mv,MV_GlobalID(sub_mv));
MV_Coords(sub_mv,coor);
MV_Set_Coords(new_mv,coor);
MEnt_Set_AttVal(sub_mv, vidatt, 0, 0.0, new_mv);
List_Add(new_verts, new_mv);
}
ME_Set_Vertex(new_me,k,new_mv); /* set edge-vertex */
}
}
fedges[j] = new_me;
}
MF_Set_Edges(new_mf,nfe,fedges,fedirs); /* set face-edge */
List_Delete(mfedges);
}
idx = 0;
while ((sub_mv = MESH_Next_Vertex(submesh, &idx)))
MEnt_Rem_AttVal(sub_mv, vidatt);
MAttrib_Delete(vidatt);
idx = 0;
while ((sub_me = MESH_Next_Edge(submesh, &idx)))
MEnt_Rem_AttVal(sub_me, eidatt);
MAttrib_Delete(eidatt);
/* Sort the added entity lists by GlobalID */
num_new_edges = List_Num_Entries(new_edges);
List_Sort(new_edges, num_new_edges, sizeof(MEdge_ptr), compareGlobalID);
for (j = 0; j < num_new_edges; j++)
new_edge_gids[j] = ME_GlobalID(List_Entry(new_edges, j));
num_new_verts = List_Num_Entries(new_verts);
List_Sort(new_verts, num_new_verts, sizeof(MVertex_ptr), compareGlobalID);
for (j = 0; j < num_new_verts; j++)
new_vert_gids[j] = MV_GlobalID(List_Entry(new_verts, j));
}
idx = 0;
while ((mv = List_Next_Entry(parbndry_verts, &idx)))
MEnt_Rem_AttVal(mv, parbndryatt);
MAttrib_Delete(parbndryatt);
List_Delete(parbndry_edges);
List_Delete(parbndry_verts);
List_Delete(new_edges);
List_Delete(new_verts);
free(parbndry_vert_gids);
free(parbndry_edge_gids);
free(new_vert_gids);
free(new_edge_gids);
free(fedges);
free(fedirs);
return 1;
}
int MESH_AssignGlobalIDs_Region(Mesh_ptr submesh, MSTK_Comm comm) {
int i, j, k, nfv, nbf, nof, ngf, nf, nr, mesh_info[10], global_id;
MVertex_ptr mv;
MFace_ptr mf;
MRegion_ptr mr;
List_ptr boundary_faces, mfverts;
int *loc, face_id[MAXPV2+3],index_nbf, max_nbf, iloc, is_boundary;
int *global_mesh_info, *list_face, *recv_list_face, *face_ov_label, *id_on_ov_list;
int rank, num;
MPI_Comm_rank(comm,&rank);
MPI_Comm_size(comm,&num);
for (i = 0; i < 10; i++) mesh_info[i] = 0;
nf = MESH_Num_Faces(submesh);
nr = MESH_Num_Regions(submesh);
mesh_info[3] = nf;
mesh_info[4] = nr;
/*
collect 'boundary' faces
if endpoints are either GHOST or OVERLAP, then it is a boundary face
*/
nbf = 0; boundary_faces = List_New(10);
for(i = 0; i < nf; i++) {
is_boundary = 1;
mf = MESH_Face(submesh,i);
mfverts = MF_Vertices(mf,1,0);
nfv = List_Num_Entries(mfverts);
for(j = 0; j < nfv; j++) {
mv = List_Entry(mfverts,j);
if(MV_PType(mv)!=PGHOST && MV_PType(mv)!=POVERLAP)
is_boundary = 0;
}
if(is_boundary) {
MF_Flag_OnParBoundary(mf);
List_Add(boundary_faces,mf);
nbf++;
}
List_Delete(mfverts);
}
/* printf("num of boundary faces %d, on rank %d\n", nbf,rank); */
mesh_info[6] = nbf;
List_Sort(boundary_faces,nbf,sizeof(MFace_ptr),compareFaceID);
global_mesh_info = (int *)malloc(10*num*sizeof(int));
MPI_Allgather(mesh_info,10,MPI_INT,global_mesh_info,10,MPI_INT,comm);
max_nbf = 0;
for(i = 0; i < num; i++)
if(max_nbf < global_mesh_info[10*i+6])
max_nbf = global_mesh_info[10*i+6];
list_face = (int *)malloc(max_nbf*(MAXPV2+1)*sizeof(int));
recv_list_face = (int *)malloc(num*max_nbf*(MAXPV2+1)*sizeof(int));
/* indicate if a face is overlapped */
face_ov_label = (int *)malloc(num*max_nbf*sizeof(int));
for (i = 0; i < num*max_nbf; i++)
face_ov_label[i] = 0;
id_on_ov_list = (int *)malloc(max_nbf*sizeof(int));
/* pack face information to send */
index_nbf = 0;
for(i = 0; i < nbf; i++) {
mf = List_Entry(boundary_faces,i);
mfverts = MF_Vertices(mf,1,0);
nfv = List_Num_Entries(mfverts);
list_face[index_nbf] = nfv;
for(j = 0; j < nfv; j++)
list_face[index_nbf+j+1] = MV_GlobalID(List_Entry(mfverts,j));
index_nbf += MAXPV2+1;
List_Delete(mfverts);
}
MPI_Allgather(list_face,(MAXPV2+1)*max_nbf,MPI_INT,recv_list_face,(MAXPV2+1)*max_nbf,MPI_INT,comm);
ngf = 0;
/* for processor other than 0 */
if(rank > 0) {
for(i = 0; i < nbf; i++) {
mf = List_Entry(boundary_faces,i);
if(MF_GlobalID(mf) > 0) continue; /* if already assigned */
mfverts = MF_Vertices(mf,1,0);
nfv = List_Num_Entries(mfverts);
face_id[0] = nfv;
for(k = 0; k < nfv; k++)
face_id[k+1] = MV_GlobalID(List_Entry(mfverts,k));
List_Delete(mfverts);
for(j = 0; j < rank; j++) {
loc = (int *)bsearch(&face_id,
&recv_list_face[(MAXPV2+1)*max_nbf*j],
global_mesh_info[10*j+6],
(MAXPV2+1)*sizeof(int),
compareFaceINT);
if(loc) {
iloc = (int)(loc - &recv_list_face[(MAXPV2+1)*max_nbf*j])/(MAXPV2+1);
MF_Set_PType(mf,PGHOST);
MF_Set_MasterParID(mf,j);
face_ov_label[max_nbf*j+iloc] |= 1;
id_on_ov_list[i] = iloc;
ngf++;
break;
}
}
}
}
/* num of ghost verts */
mesh_info[9] = ngf;
MPI_Allgather(mesh_info,10,MPI_INT,global_mesh_info,10,MPI_INT,comm);
/* since this is a OR reduction, we can use MPI_IN_PLACE, send buffer same as recv buffer */
MPI_Allreduce(MPI_IN_PLACE,face_ov_label,num*max_nbf,MPI_INT,MPI_LOR,comm);
/* Assign global ID for non ghost face */
global_id = 1;
for(i = 0; i < rank; i++)
global_id = global_id + global_mesh_info[10*i+3] - global_mesh_info[10*i+9];
for(i = 0; i < nf; i++) {
mf = MESH_Face(submesh,i);
if (MF_PType(mf) == PGHOST) continue;
if (!MF_GlobalID(mf)) MF_Set_GlobalID(mf,global_id++);
MF_Set_MasterParID(mf,rank);
}
/* label OVERLAP face */
nof = 0;
for(i = 0; i < nbf; i++)
if(face_ov_label[rank*max_nbf+i]) {
mf = List_Entry(boundary_faces,i);
MF_Set_PType(mf,POVERLAP);
nof++;
}
/* printf("num of ghost faces %d, overlap faces %d on rank %d\n", ngf, nof, rank); */
/* this time only global id are sent */
for(i = 0; i < nbf; i++) {
mf = List_Entry(boundary_faces,i);
list_face[i] = MF_GlobalID(mf);
}
MPI_Allgather(list_face,max_nbf,MPI_INT,recv_list_face,max_nbf,MPI_INT,comm);
for(i = 0; i < nbf; i++) {
mf = List_Entry(boundary_faces,i);
if(MF_PType(mf)==PGHOST) {
int gid = recv_list_face[MF_MasterParID(mf)*max_nbf+id_on_ov_list[i]];
#ifdef DEBUG
if (MF_GlobalID(mf) && MF_GlobalID(mf) != gid)
MSTK_Report("MESH_AssignGlobalIDs_region",
"Ghost face already has different global ID", MSTK_WARN);
#endif
MF_Set_GlobalID(mf, gid);
}
}
/* assign region global id */
global_id = 1;
for(i = 0; i < rank; i++)
global_id = global_id + global_mesh_info[10*i+4];
for(i = 0; i < nr; i++) {
mr = MESH_Region(submesh,i);
MR_Set_PType(mr,PINTERIOR);
if (!MR_GlobalID(mr)) MR_Set_GlobalID(mr,global_id++);
MR_Set_MasterParID(mr,rank);
}
List_Delete(boundary_faces);
free(global_mesh_info);
free(face_ov_label);
free(id_on_ov_list);
free(list_face);
free(recv_list_face);
return 1;
}
int MESH_AssignGlobalIDs_Vertex(Mesh_ptr submesh, int have_GIDs, MSTK_Comm comm) {
int i, j, nv, nbv, ne, nf, nr, mesh_info[10];
MVertex_ptr mv;
List_ptr boundary_verts;
RepType rtype;
int index_nbv, max_nbv, iloc, num_ghost_verts, global_id;
int *global_mesh_info, *vertex_ov_label, *vertex_ov_global_id, *id_on_ov_list;
int rank, num;
MPI_Comm_rank(comm,&rank);
MPI_Comm_size(comm,&num);
for (i = 0; i < 10; i++) mesh_info[i] = 0;
rtype = MESH_RepType(submesh);
nv = MESH_Num_Vertices(submesh);
ne = MESH_Num_Edges(submesh);
nf = MESH_Num_Faces(submesh);
nr = MESH_Num_Regions(submesh);
mesh_info[0] = rtype;
mesh_info[1] = nv;
mesh_info[2] = ne;
mesh_info[3] = nf;
mesh_info[4] = nr;
/* calculate number of boundary vertices */
nbv = 0; boundary_verts = List_New(10);
if (nr) {
for(i = 0; i < nv; i++) {
mv = MESH_Vertex(submesh,i);
if (vertex_on_boundary3D(mv)) {
MV_Flag_OnParBoundary(mv);
List_Add(boundary_verts,mv);
nbv++;
}
}
}
else {
for(i = 0; i < nv; i++) {
mv = MESH_Vertex(submesh,i);
if (vertex_on_boundary2D(mv)) {
MV_Flag_OnParBoundary(mv);
List_Add(boundary_verts,mv);
nbv++;
}
}
}
mesh_info[5] = nbv;
/*
gather submeshes information
right now we only need nv and nbv, and later num_ghost_verts, but we gather all mesh_info
*/
global_mesh_info = (int *)malloc(10*num*sizeof(int));
MPI_Allgather(mesh_info,10,MPI_INT,global_mesh_info,10,MPI_INT,comm);
/* get largest number of boundary vertices of all the processors */
max_nbv = 0;
for(i = 0; i < num; i++)
if(max_nbv < global_mesh_info[10*i+5])
max_nbv = global_mesh_info[10*i+5];
if (have_GIDs) {
int *list_boundary_vertex_gid = (int *)malloc(max_nbv*sizeof(int));
int *recv_list_vertex_gid = (int *)malloc(num*max_nbv*sizeof(int));
/* sort boundary vertices based on Global ID, for binary search */
List_Sort(boundary_verts,nbv,sizeof(MVertex_ptr),compareGlobalID);
/* only global ids are sent */
index_nbv = 0;
for(i = 0; i < nbv; i++) {
mv = List_Entry(boundary_verts,i);
list_boundary_vertex_gid[index_nbv] = MV_GlobalID(mv);
index_nbv++;
}
MPI_Allgather(list_boundary_vertex_gid,max_nbv,MPI_INT,recv_list_vertex_gid,max_nbv,MPI_INT,comm);
/* indicate if a vertex is overlapped */
vertex_ov_label = (int *)malloc(num*max_nbv*sizeof(int));
/*
store the local boundary id on ov processor
it is used to assign global id of local ghost vertices
no need to store master partition id, MV_MasterParID(mv) is already assigned
*/
id_on_ov_list = (int *)malloc(max_nbv*sizeof(int));
for (i = 0; i < num*max_nbv; i++)
vertex_ov_label[i] = 0;
num_ghost_verts = 0;
/* for processor other than 0 */
if(rank > 0) {
for(i = 0; i < nbv; i++) {
mv = List_Entry(boundary_verts,i);
int gid = MV_GlobalID(mv);
/* check which previous processor has a vertex with same Global ID*/
for(j = 0; j < rank; j++) {
/* since each processor has sorted the boundary vertices, use binary search */
int *loc = (int *)bsearch(&gid,
&recv_list_vertex_gid[max_nbv*j],
global_mesh_info[10*j+5],
sizeof(int),
compareINT);
/* if found the vertex on previous processors */
if(loc) {
/* here the location iloc is relative to the beginning of the jth processor */
iloc = (int)(loc - &recv_list_vertex_gid[max_nbv*j]);
MV_Set_PType(mv,PGHOST);
MV_Set_MasterParID(mv,j);
num_ghost_verts++;
/* label the original vertex as overlapped */
vertex_ov_label[max_nbv*j+iloc] |= 1;
id_on_ov_list[i] = iloc;
/* if found on processor j, no need to test for j+1,j+2...*/
break;
}
}
}
}
free(list_boundary_vertex_gid);
free(recv_list_vertex_gid);
}
else {
double coor[3];
int *list_boundary_vertex = (int *)malloc(max_nbv*sizeof(int));
double *list_boundary_coor = (double *)malloc(3*max_nbv*sizeof(double));
int *recv_list_vertex = (int *)malloc(num*max_nbv*sizeof(int));
double *recv_list_coor = (double *)malloc(3*num*max_nbv*sizeof(double));
/* sort boundary vertices based on coordinate value, for binary search */
List_Sort(boundary_verts,nbv,sizeof(MVertex_ptr),compareVertexCoor);
/* only local id and coordinate values are sent */
index_nbv = 0;
for(i = 0; i < nbv; i++) {
mv = List_Entry(boundary_verts,i);
list_boundary_vertex[index_nbv] = MV_ID(mv);
MV_Coords(mv,coor);
list_boundary_coor[index_nbv*3] = coor[0];
list_boundary_coor[index_nbv*3+1] = coor[1];
list_boundary_coor[index_nbv*3+2] = coor[2];
index_nbv++;
}
MPI_Allgather(list_boundary_vertex,max_nbv,MPI_INT,recv_list_vertex,max_nbv,MPI_INT,comm);
MPI_Allgather(list_boundary_coor,3*max_nbv,MPI_DOUBLE,recv_list_coor,3*max_nbv,MPI_DOUBLE,comm);
/* indicate if a vertex is overlapped */
vertex_ov_label = (int *)malloc(num*max_nbv*sizeof(int));
/*
store the local boundary id on ov processor
it is used to assign global id of local ghost vertices
no need to store master partition id, MV_MasterParID(mv) is already assigned
*/
id_on_ov_list = (int *)malloc(max_nbv*sizeof(int));
for (i = 0; i < num*max_nbv; i++)
vertex_ov_label[i] = 0;
num_ghost_verts = 0;
/* for processor other than 0 */
if(rank > 0) {
for(i = 0; i < nbv; i++) {
mv = List_Entry(boundary_verts,i);
MV_Coords(mv,coor);
/* check which previous processor has the same coordinate vertex */
for(j = 0; j < rank; j++) {
/* since each processor has sorted the boundary vertices, use binary search */
double *loc = (double *)bsearch(&coor,
&recv_list_coor[3*max_nbv*j],
global_mesh_info[10*j+5],
3*sizeof(double),
compareCoorDouble);
/* if found the vertex on previous processors */
if(loc) {
/* here the location iloc is relative to the beginning of the jth processor */
iloc = (int)(loc - &recv_list_coor[3*max_nbv*j])/3;
MV_Set_PType(mv,PGHOST);
MV_Set_MasterParID(mv,j);
num_ghost_verts++;
/* label the original vertex as overlapped */
vertex_ov_label[max_nbv*j+iloc] |= 1;
id_on_ov_list[i] = iloc;
/* if found on processor j, no need to test for j+1,j+2...*/
break;
}
}
}
}
free(list_boundary_coor);
free(recv_list_coor);
free(list_boundary_vertex);
free(recv_list_vertex);
}
/* num of ghost verts */
mesh_info[9] = num_ghost_verts;
/* update ghost verts number */
MPI_Allgather(mesh_info,10,MPI_INT,global_mesh_info,10,MPI_INT,comm);
/* since this is a OR reduction, we can use MPI_IN_PLACE, send buffer same as recv buffer */
MPI_Allreduce(MPI_IN_PLACE,vertex_ov_label,num*max_nbv,MPI_INT,MPI_LOR,comm);
/* calculate starting global id number for vertices*/
if (!have_GIDs) {
global_id = 1;
for(i = 0; i < rank; i++)
global_id = global_id + global_mesh_info[10*i+1] - global_mesh_info[10*i+9];
for(i = 0; i < nv; i++) {
mv = MESH_Vertex(submesh,i);
if (MV_PType(mv) == PGHOST)
continue;
MV_Set_GlobalID(mv,global_id++);
MV_Set_MasterParID(mv,rank);
}
}
/* store overlapped vertices IDs and broadast */
vertex_ov_global_id = (int *)malloc(num*max_nbv*sizeof(int));
for(i = 0; i < num*max_nbv; i++)
vertex_ov_global_id[i] = 0;
for(i = 0; i < nbv; i++) {
if(vertex_ov_label[rank*max_nbv+i]) {
mv = List_Entry(boundary_verts,i);
MV_Set_PType(mv,POVERLAP);
vertex_ov_global_id[rank*max_nbv+i] = MV_GlobalID(mv);
}
}
MPI_Allreduce(MPI_IN_PLACE,vertex_ov_global_id,num*max_nbv,MPI_INT,MPI_MAX,comm);
for(i = 0; i < nbv; i++) {
mv = List_Entry(boundary_verts,i);
if(MV_PType(mv) == PGHOST)
MV_Set_GlobalID(mv,vertex_ov_global_id[MV_MasterParID(mv)*max_nbv+id_on_ov_list[i]]);
}
List_Delete(boundary_verts);
free(global_mesh_info);
free(vertex_ov_label);
free(vertex_ov_global_id);
free(id_on_ov_list);
return 1;
}
int MESH_AssignGlobalIDs_Edge(Mesh_ptr submesh, MSTK_Comm comm) {
int i, j, k, nbe, noe, nge, ne, mesh_info[10], global_id;
MVertex_ptr mv;
MEdge_ptr me;
List_ptr boundary_edges;
int *loc, edge_id[2], max_nbe, index_nbe, iloc, is_boundary;
int *global_mesh_info, *list_edge, *recv_list_edge, *edge_ov_label, *id_on_ov_list;
int rank, num;
MPI_Comm_rank(comm,&rank);
MPI_Comm_size(comm,&num);
for (i = 0; i < 10; i++) mesh_info[i] = 0;
ne = MESH_Num_Edges(submesh);
mesh_info[2] = ne;
/*
collect 'boundary' edges
if endpoints are either GHOST or OVERLAP, then it is a boundary edge
*/
nbe = 0; boundary_edges = List_New(10);
for(i = 0; i < ne; i++) {
is_boundary = 1;
me = MESH_Edge(submesh,i);
for( k = 0; k < 2; k++) {
mv = ME_Vertex(me,k);
if(MV_PType(mv)!=PGHOST && MV_PType(mv)!=POVERLAP)
is_boundary = 0;
}
if(is_boundary) {
ME_Flag_OnParBoundary(me);
List_Add(boundary_edges,me);
nbe++;
}
}
mesh_info[6] = nbe;
List_Sort(boundary_edges,nbe,sizeof(MEdge_ptr),compareEdgeID);
global_mesh_info = (int *)malloc(10*num*sizeof(int));
MPI_Allgather(mesh_info,10,MPI_INT,global_mesh_info,10,MPI_INT,comm);
max_nbe = 0;
for(i = 0; i < num; i++)
if(max_nbe < global_mesh_info[10*i+6])
max_nbe = global_mesh_info[10*i+6];
list_edge = (int *)malloc(max_nbe*2*sizeof(int));
recv_list_edge = (int *)malloc(num*max_nbe*2*sizeof(int));
/* indicate if a edge is overlapped */
edge_ov_label = (int *)malloc(num*max_nbe*sizeof(int));
for (i = 0; i < num*max_nbe; i++)
edge_ov_label[i] = 0;
id_on_ov_list = (int *)malloc(max_nbe*sizeof(int));
/* pack edge information to send */
index_nbe = 0;
for(i = 0; i < nbe; i++) {
me = List_Entry(boundary_edges,i);
list_edge[index_nbe] = MV_GlobalID(ME_Vertex(me,0));
list_edge[index_nbe+1] = MV_GlobalID(ME_Vertex(me,1));
index_nbe += 2;
}
MPI_Allgather(list_edge,2*max_nbe,MPI_INT,recv_list_edge,2*max_nbe,MPI_INT,comm);
nge = 0;
/* for processor other than 0 */
if(rank > 0) {
for(i = 0; i < nbe; i++) {
me = List_Entry(boundary_edges,i);
if(ME_GlobalID(me) > 0) continue; /* if already assigned */
edge_id[0] = MV_GlobalID(ME_Vertex(me,0));
edge_id[1] = MV_GlobalID(ME_Vertex(me,1));
for(j = 0; j < rank; j++) {
loc = (int *)bsearch(&edge_id,
&recv_list_edge[2*max_nbe*j],
global_mesh_info[10*j+6],
2*sizeof(int),
compareEdgeINT);
if(loc) {
iloc = (int)(loc - &recv_list_edge[2*max_nbe*j])/2;
ME_Set_PType(me,PGHOST);
ME_Set_MasterParID(me,j);
edge_ov_label[max_nbe*j+iloc] |= 1;
id_on_ov_list[i] = iloc;
nge++;
break;
}
}
}
}
/* num of ghost verts */
mesh_info[9] = nge;
MPI_Allgather(mesh_info,10,MPI_INT,global_mesh_info,10,MPI_INT,comm);
/* since this is a OR reduction, we can use MPI_IN_PLACE, send buffer same as recv buffer */
MPI_Allreduce(MPI_IN_PLACE,edge_ov_label,num*max_nbe,MPI_INT,MPI_LOR,comm);
/* Assign global ID for non ghost edge */
global_id = 1;
for(i = 0; i < rank; i++)
global_id = global_id + global_mesh_info[10*i+2] - global_mesh_info[10*i+9];
for(i = 0; i < ne; i++) {
me = MESH_Edge(submesh,i);
if (ME_PType(me) == PGHOST) continue;
if (!ME_GlobalID(me)) ME_Set_GlobalID(me,global_id++);
ME_Set_MasterParID(me,rank);
}
/* label OVERLAP edge */
noe = 0;
for(i = 0; i < nbe; i++)
if(edge_ov_label[rank*max_nbe+i]) {
me = List_Entry(boundary_edges,i);
ME_Set_PType(me,POVERLAP);
noe++;
}
/* this time only global id are sent */
for(i = 0; i < nbe; i++) {
me = List_Entry(boundary_edges,i);
list_edge[i] = ME_GlobalID(me);
}
MPI_Allgather(list_edge,max_nbe,MPI_INT,recv_list_edge,max_nbe,MPI_INT,comm);
for(i = 0; i < nbe; i++) {
me = List_Entry(boundary_edges,i);
if(ME_PType(me)==PGHOST) {
int gid = recv_list_edge[ME_MasterParID(me)*max_nbe+id_on_ov_list[i]];
#ifdef DEBUG
if (ME_GlobalID(me) && ME_GlobalID(me) != gid)
MSTK_Report("MESH_Assign_GlobalIDs_Edge",
"Ghost edge already has different global ID",
MSTK_WARN);
#endif
ME_Set_GlobalID(me, gid);
}
}
List_Delete(boundary_edges);
free(global_mesh_info);
free(edge_ov_label);
free(id_on_ov_list);
free(list_edge);
free(recv_list_edge);
return 1;
}
int MESH_Send_Vertices(Mesh_ptr mesh, int torank, MSTK_Comm comm,
int *numreq, int *maxreq, MPI_Request **requests,
int *numptrs2free, int *maxptrs2free,
void ***ptrs2free) {
int i, j, nv;
MVertex_ptr mv;
double coor[3];
MPI_Request mpirequest;
if (requests == NULL)
MSTK_Report("MESH_Surf_SendMesh","MPI requests array is NULL",MSTK_FATAL);
if (*maxreq == 0) {
*maxreq = 25;
*requests = (MPI_Request *) malloc(*maxreq*sizeof(MPI_Request));
*numreq = 0;
}
else if (*maxreq < (*numreq) + 11) {
*maxreq = 2*(*maxreq) + 11;
*requests = (MPI_Request *) realloc(*requests,*maxreq*sizeof(MPI_Request));
}
/* Now send out detailed vertex info */
nv = MESH_Num_Vertices(mesh);
int *list_vertex = (int *) malloc(3*nv*sizeof(int));
/* Store the 3 auxilliary data fields - would be nice if we didn't
* have to send the data in such an error prone way (with bit
* shifting) that requires knowledge of the internal structure of
* MEntity */
for(i = 0; i < nv; i++) {
mv = MESH_Vertex(mesh,i);
list_vertex[3*i] = (MV_GEntID(mv)<<3) | (MV_GEntDim(mv));
list_vertex[3*i+1] = (MV_MasterParID(mv) <<3) | MV_OnParBoundary(mv)<<2 | (MV_PType(mv));
list_vertex[3*i+2] = MV_GlobalID(mv);
}
/* send vertices */
MPI_Isend(list_vertex,3*nv,MPI_INT,torank,torank,comm,&mpirequest);
(*requests)[*numreq] = mpirequest;
(*numreq)++;;
int nptrs = 1;
if (*maxptrs2free == 0) {
*maxptrs2free = 25;
*ptrs2free = (void **) malloc(*maxptrs2free*sizeof(void *));
*numptrs2free = 0;
}
else if (*maxptrs2free < (*numptrs2free) + nptrs) {
*maxptrs2free = 2*(*maxptrs2free) + nptrs;
*ptrs2free = (void **) realloc(*ptrs2free,(*maxptrs2free)*sizeof(void *));
}
(*ptrs2free)[(*numptrs2free)++] = list_vertex;
return 1;
}