int main(int argc, char *argv[])
{
struct Map_info In, Out;
static struct line_pnts *Points;
struct line_cats *Cats;
struct GModule *module; /* GRASS module for parsing arguments */
struct Option *map_in, *map_out;
struct Option *cat_opt, *field_opt, *where_opt, *abcol, *afcol;
struct Option *iter_opt, *error_opt;
struct Flag *geo_f, *add_f;
int chcat, with_z;
int layer, mask_type;
struct varray *varray;
dglGraph_s *graph;
int i, geo, nnodes, nlines, j, max_cat;
char buf[2000], *covered;
/* initialize GIS environment */
G_gisinit(argv[0]); /* reads grass env, stores program name to G_program_name() */
/* initialize module */
module = G_define_module();
module->keywords = _("vector, network, centrality measures");
module->description =
_("Computes degree, centrality, betweeness, closeness and eigenvector "
"centrality measures in the network.");
/* Define the different options as defined in gis.h */
map_in = G_define_standard_option(G_OPT_V_INPUT);
field_opt = G_define_standard_option(G_OPT_V_FIELD);
map_out = G_define_standard_option(G_OPT_V_OUTPUT);
cat_opt = G_define_standard_option(G_OPT_V_CATS);
cat_opt->guisection = _("Selection");
where_opt = G_define_standard_option(G_OPT_WHERE);
where_opt->guisection = _("Selection");
afcol = G_define_standard_option(G_OPT_COLUMN);
afcol->key = "afcolumn";
afcol->required = NO;
afcol->description =
_("Name of arc forward/both direction(s) cost column");
afcol->guisection = _("Cost");
abcol = G_define_standard_option(G_OPT_COLUMN);
abcol->key = "abcolumn";
abcol->required = NO;
abcol->description = _("Name of arc backward direction cost column");
abcol->guisection = _("Cost");
deg_opt = G_define_standard_option(G_OPT_COLUMN);
deg_opt->key = "degree";
deg_opt->required = NO;
deg_opt->description = _("Name of degree centrality column");
deg_opt->guisection = _("Columns");
close_opt = G_define_standard_option(G_OPT_COLUMN);
close_opt->key = "closeness";
close_opt->required = NO;
close_opt->description = _("Name of closeness centrality column");
close_opt->guisection = _("Columns");
betw_opt = G_define_standard_option(G_OPT_COLUMN);
betw_opt->key = "betweenness";
betw_opt->required = NO;
betw_opt->description = _("Name of betweenness centrality column");
betw_opt->guisection = _("Columns");
eigen_opt = G_define_standard_option(G_OPT_COLUMN);
eigen_opt->key = "eigenvector";
eigen_opt->required = NO;
eigen_opt->description = _("Name of eigenvector centrality column");
eigen_opt->guisection = _("Columns");
iter_opt = G_define_option();
iter_opt->key = "iterations";
iter_opt->answer = "1000";
iter_opt->type = TYPE_INTEGER;
iter_opt->required = NO;
iter_opt->description =
_("Maximum number of iterations to compute eigenvector centrality");
error_opt = G_define_option();
error_opt->key = "error";
error_opt->answer = "0.1";
error_opt->type = TYPE_DOUBLE;
error_opt->required = NO;
error_opt->description =
_("Cummulative error tolerance for eigenvector centrality");
geo_f = G_define_flag();
geo_f->key = 'g';
geo_f->description =
_("Use geodesic calculation for longitude-latitude locations");
add_f = G_define_flag();
add_f->key = 'a';
add_f->description = _("Add points on nodes");
/* options and flags parser */
if (G_parser(argc, argv))
exit(EXIT_FAILURE);
/* TODO: make an option for this */
mask_type = GV_LINE | GV_BOUNDARY;
Points = Vect_new_line_struct();
Cats = Vect_new_cats_struct();
Vect_check_input_output_name(map_in->answer, map_out->answer,
GV_FATAL_EXIT);
Vect_set_open_level(2);
if (1 > Vect_open_old(&In, map_in->answer, ""))
G_fatal_error(_("Unable to open vector map <%s>"), map_in->answer);
with_z = Vect_is_3d(&In);
if (0 > Vect_open_new(&Out, map_out->answer, with_z)) {
Vect_close(&In);
G_fatal_error(_("Unable to create vector map <%s>"), map_out->answer);
}
if (geo_f->answer) {
geo = 1;
if (G_projection() != PROJECTION_LL)
G_warning(_("The current projection is not longitude-latitude"));
}
else
geo = 0;
/* parse filter option and select appropriate lines */
layer = atoi(field_opt->answer);
chcat =
(NetA_initialise_varray
(&In, layer, mask_type, where_opt->answer, cat_opt->answer,
&varray) == 1);
/* Create table */
Fi = Vect_default_field_info(&Out, 1, NULL, GV_1TABLE);
Vect_map_add_dblink(&Out, 1, NULL, Fi->table, "cat", Fi->database,
Fi->driver);
db_init_string(&sql);
driver = db_start_driver_open_database(Fi->driver, Fi->database);
if (driver == NULL)
G_fatal_error(_("Unable to open database <%s> by driver <%s>"),
Fi->database, Fi->driver);
db_init_string(&tmp);
if (deg_opt->answer)
append_string(&tmp, deg_opt->answer);
if (close_opt->answer)
append_string(&tmp, close_opt->answer);
if (betw_opt->answer)
append_string(&tmp, betw_opt->answer);
if (eigen_opt->answer)
append_string(&tmp, eigen_opt->answer);
sprintf(buf,
"create table %s(cat integer%s)", Fi->table, db_get_string(&tmp));
db_set_string(&sql, buf);
G_debug(2, db_get_string(&sql));
if (db_execute_immediate(driver, &sql) != DB_OK) {
db_close_database_shutdown_driver(driver);
G_fatal_error(_("Unable to create table: '%s'"), db_get_string(&sql));
}
if (db_create_index2(driver, Fi->table, "cat") != DB_OK)
G_warning(_("Cannot create index"));
if (db_grant_on_table
(driver, Fi->table, DB_PRIV_SELECT, DB_GROUP | DB_PUBLIC) != DB_OK)
G_fatal_error(_("Cannot grant privileges on table <%s>"), Fi->table);
db_begin_transaction(driver);
Vect_copy_head_data(&In, &Out);
Vect_hist_copy(&In, &Out);
Vect_hist_command(&Out);
Vect_net_build_graph(&In, mask_type, atoi(field_opt->answer), 0,
afcol->answer, abcol->answer, NULL, geo, 0);
graph = &(In.graph);
nnodes = dglGet_NodeCount(graph);
deg = closeness = betw = eigen = NULL;
covered = (char *)G_calloc(nnodes + 1, sizeof(char));
if (!covered)
G_fatal_error(_("Out of memory"));
if (deg_opt->answer) {
deg = (double *)G_calloc(nnodes + 1, sizeof(double));
if (!deg)
G_fatal_error(_("Out of memory"));
}
if (close_opt->answer) {
closeness = (double *)G_calloc(nnodes + 1, sizeof(double));
if (!closeness)
G_fatal_error(_("Out of memory"));
}
if (betw_opt->answer) {
betw = (double *)G_calloc(nnodes + 1, sizeof(double));
if (!betw)
G_fatal_error(_("Out of memory"));
}
if (eigen_opt->answer) {
eigen = (double *)G_calloc(nnodes + 1, sizeof(double));
if (!eigen)
G_fatal_error(_("Out of memory"));
}
if (deg_opt->answer) {
G_message(_("Computing degree centrality measure"));
NetA_degree_centrality(graph, deg);
}
if (betw_opt->answer || close_opt->answer) {
G_message(_("Computing betweenness and/or closeness centrality measure"));
NetA_betweenness_closeness(graph, betw, closeness);
if (closeness)
for (i = 1; i <= nnodes; i++)
closeness[i] /= (double)In.cost_multip;
}
if (eigen_opt->answer) {
G_message(_("Computing eigenvector centrality measure"));
NetA_eigenvector_centrality(graph, atoi(iter_opt->answer),
atof(error_opt->answer), eigen);
}
nlines = Vect_get_num_lines(&In);
G_message(_("Writing data into the table..."));
G_percent_reset();
for (i = 1; i <= nlines; i++) {
G_percent(i, nlines, 1);
int type = Vect_read_line(&In, Points, Cats, i);
if (type == GV_POINT && (!chcat || varray->c[i])) {
int cat, node;
if (!Vect_cat_get(Cats, layer, &cat))
continue;
Vect_reset_cats(Cats);
Vect_cat_set(Cats, 1, cat);
Vect_write_line(&Out, type, Points, Cats);
Vect_get_line_nodes(&In, i, &node, NULL);
process_node(node, cat);
covered[node] = 1;
}
}
if (add_f->answer && !chcat) {
max_cat = 0;
for (i = 1; i <= nlines; i++) {
Vect_read_line(&In, NULL, Cats, i);
for (j = 0; j < Cats->n_cats; j++)
if (Cats->cat[j] > max_cat)
max_cat = Cats->cat[j];
}
max_cat++;
for (i = 1; i <= nnodes; i++)
if (!covered[i]) {
Vect_reset_cats(Cats);
Vect_cat_set(Cats, 1, max_cat);
NetA_add_point_on_node(&In, &Out, i, Cats);
process_node(i, max_cat);
max_cat++;
}
}
db_commit_transaction(driver);
db_close_database_shutdown_driver(driver);
G_free(covered);
if (deg)
G_free(deg);
if (closeness)
G_free(closeness);
if (betw)
G_free(betw);
if (eigen)
G_free(eigen);
Vect_build(&Out);
Vect_close(&In);
Vect_close(&Out);
exit(EXIT_SUCCESS);
}
int main(int argc, char *argv[])
{
struct Map_info In, Out;
static struct line_pnts *Points;
struct line_cats *Cats;
struct GModule *module; /* GRASS module for parsing arguments */
struct Option *map_in, *map_out;
struct Option *method_opt, *afield_opt, *nfield_opt, *abcol,
*afcol, *ncol;
struct Flag *add_f;
int with_z;
int afield, nfield, mask_type;
dglGraph_s *graph;
int *component, nnodes, type, i, nlines, components, max_cat;
char buf[2000], *covered;
char *desc;
/* Attribute table */
dbString sql;
dbDriver *driver;
struct field_info *Fi;
/* initialize GIS environment */
G_gisinit(argv[0]); /* reads grass env, stores program name to G_program_name() */
/* initialize module */
module = G_define_module();
G_add_keyword(_("vector"));
G_add_keyword(_("network"));
G_add_keyword(_("components"));
module->description =
_("Computes strongly and weakly connected components in the network.");
/* Define the different options as defined in gis.h */
map_in = G_define_standard_option(G_OPT_V_INPUT);
afield_opt = G_define_standard_option(G_OPT_V_FIELD);
afield_opt->key = "arc_layer";
afield_opt->answer = "1";
afield_opt->label = _("Arc layer");
afield_opt->guisection = _("Cost");
nfield_opt = G_define_standard_option(G_OPT_V_FIELD);
nfield_opt->key = "node_layer";
nfield_opt->answer = "2";
nfield_opt->label = _("Node layer");
nfield_opt->guisection = _("Cost");
afcol = G_define_standard_option(G_OPT_DB_COLUMN);
afcol->key = "arc_column";
afcol->required = NO;
afcol->description =
_("Arc forward/both direction(s) cost column (number)");
afcol->guisection = _("Cost");
abcol = G_define_standard_option(G_OPT_DB_COLUMN);
abcol->key = "arc_backward_column";
abcol->required = NO;
abcol->description = _("Arc backward direction cost column (number)");
abcol->guisection = _("Cost");
ncol = G_define_option();
ncol->key = "node_column";
ncol->type = TYPE_STRING;
ncol->required = NO;
ncol->description = _("Node cost column (number)");
ncol->guisection = _("Cost");
map_out = G_define_standard_option(G_OPT_V_OUTPUT);
method_opt = G_define_option();
method_opt->key = "method";
method_opt->type = TYPE_STRING;
method_opt->required = YES;
method_opt->multiple = NO;
method_opt->options = "weak,strong";
desc = NULL;
G_asprintf(&desc,
"weak;%s;strong;%s",
_("Weakly connected components"),
_("Strongly connected components"));
method_opt->descriptions = desc;
method_opt->description = _("Type of components");
add_f = G_define_flag();
add_f->key = 'a';
add_f->description = _("Add points on nodes");
/* options and flags parser */
if (G_parser(argc, argv))
exit(EXIT_FAILURE);
/* TODO: make an option for this */
mask_type = GV_LINE | GV_BOUNDARY;
Points = Vect_new_line_struct();
Cats = Vect_new_cats_struct();
Vect_check_input_output_name(map_in->answer, map_out->answer,
G_FATAL_EXIT);
Vect_set_open_level(2);
if (1 > Vect_open_old(&In, map_in->answer, ""))
G_fatal_error(_("Unable to open vector map <%s>"), map_in->answer);
with_z = Vect_is_3d(&In);
if (0 > Vect_open_new(&Out, map_out->answer, with_z)) {
Vect_close(&In);
G_fatal_error(_("Unable to create vector map <%s>"), map_out->answer);
}
/* parse filter option and select appropriate lines */
afield = Vect_get_field_number(&In, afield_opt->answer);
nfield = Vect_get_field_number(&In, nfield_opt->answer);
if (0 != Vect_net_build_graph(&In, mask_type, afield, nfield, afcol->answer,
abcol->answer, ncol->answer, 0, 2))
G_fatal_error(_("Unable to build graph for vector map <%s>"), Vect_get_full_name(&In));
graph = Vect_net_get_graph(&In);
nnodes = Vect_get_num_nodes(&In);
component = (int *)G_calloc(nnodes + 1, sizeof(int));
covered = (char *)G_calloc(nnodes + 1, sizeof(char));
if (!component || !covered) {
G_fatal_error(_("Out of memory"));
exit(EXIT_FAILURE);
}
/* Create table */
Fi = Vect_default_field_info(&Out, 1, NULL, GV_1TABLE);
Vect_map_add_dblink(&Out, 1, NULL, Fi->table, GV_KEY_COLUMN, Fi->database,
Fi->driver);
db_init_string(&sql);
driver = db_start_driver_open_database(Fi->driver, Fi->database);
if (driver == NULL)
G_fatal_error(_("Unable to open database <%s> by driver <%s>"),
Fi->database, Fi->driver);
sprintf(buf, "create table %s ( cat integer, comp integer)", Fi->table);
db_set_string(&sql, buf);
G_debug(2, "%s", db_get_string(&sql));
if (db_execute_immediate(driver, &sql) != DB_OK) {
db_close_database_shutdown_driver(driver);
G_fatal_error(_("Unable to create table: '%s'"), db_get_string(&sql));
}
if (db_create_index2(driver, Fi->table, GV_KEY_COLUMN) != DB_OK)
G_warning(_("Cannot create index"));
if (db_grant_on_table
(driver, Fi->table, DB_PRIV_SELECT, DB_GROUP | DB_PUBLIC) != DB_OK)
G_fatal_error(_("Cannot grant privileges on table <%s>"), Fi->table);
db_begin_transaction(driver);
if (method_opt->answer[0] == 'w') {
G_message(_("Computing weakly connected components..."));
components = NetA_weakly_connected_components(graph, component);
}
else {
G_message(_("Computing strongly connected components..."));
components = NetA_strongly_connected_components(graph, component);
}
G_debug(3, "Components: %d", components);
G_message(_("Writing output..."));
Vect_copy_head_data(&In, &Out);
Vect_hist_copy(&In, &Out);
Vect_hist_command(&Out);
nlines = Vect_get_num_lines(&In);
max_cat = 1;
G_percent(0, nlines, 4);
for (i = 1; i <= nlines; i++) {
int comp, cat;
G_percent(i, nlines, 4);
type = Vect_read_line(&In, Points, Cats, i);
if (!Vect_cat_get(Cats, afield, &cat))
continue;
if (type == GV_LINE || type == GV_BOUNDARY) {
int node1, node2;
Vect_get_line_nodes(&In, i, &node1, &node2);
if (component[node1] == component[node2]) {
comp = component[node1];
}
else {
continue;
}
}
else if (type == GV_POINT) {
int node;
/* Vect_get_line_nodes(&In, i, &node, NULL); */
node = Vect_find_node(&In, Points->x[0], Points->y[0], Points->z[0], 0, 0);
if (!node)
continue;
comp = component[node];
covered[node] = 1;
}
else
continue;
cat = max_cat++;
Vect_reset_cats(Cats);
Vect_cat_set(Cats, 1, cat);
Vect_write_line(&Out, type, Points, Cats);
insert_new_record(driver, Fi, &sql, cat, comp);
}
/*add points on nodes not covered by any point in the network */
if (add_f->answer) {
for (i = 1; i <= nnodes; i++)
if (!covered[i]) {
Vect_reset_cats(Cats);
Vect_cat_set(Cats, 1, max_cat);
NetA_add_point_on_node(&In, &Out, i, Cats);
insert_new_record(driver, Fi, &sql, max_cat++, component[i]);
}
}
db_commit_transaction(driver);
db_close_database_shutdown_driver(driver);
Vect_close(&In);
Vect_build(&Out);
Vect_close(&Out);
G_done_msg(_("Found %d components."), components);
exit(EXIT_SUCCESS);
}
