void Translation_free(Translation *translation) {
Object_decRefCount(translation);
if (Object_getRefCount(translation) > 0) {
return;
} else if (Object_getRefCount(translation) < 0) {
fprintf(stderr,"Error: Negative reference count for Translation\n"
" Freeing it anyway\n");
}
free(translation);
}
void PredictionExon_freeImpl(PredictionExon *pe) {
Object_decRefCount(pe);
if (Object_getRefCount(pe) > 0) {
return;
} else if (Object_getRefCount(pe) < 0) {
fprintf(stderr,"Error: Negative reference count for PredictionExon\n"
" Freeing it anyway\n");
}
if (pe->displayLabel) EcoString_freeStr(ecoSTable, pe->displayLabel);
SeqFeature_freePtrs((SeqFeature *)pe);
free(pe);
}
void RawContig_free(RawContig *rc) {
Object_decRefCount(rc);
if (Object_getRefCount(rc) > 0) {
return;
} else if (Object_getRefCount(rc) < 0) {
fprintf(stderr,"Error: Negative reference count for RawContig\n"
" Freeing it anyway\n");
}
printf("Freeing rawcontig\n");
BaseContig_freePtrs((BaseContig*)rc);
free(rc);
}
void Clone_free(Clone *clone) {
Object_decRefCount(clone);
if (Object_getRefCount(clone) > 0) {
return;
} else if (Object_getRefCount(clone) < 0) {
fprintf(stderr,"Error: Negative reference count for Clone\n"
" Freeing it anyway\n");
}
if (clone->name) EcoString_freeStr(ecoSTable, clone->name);
if (clone->emblAcc) EcoString_freeStr(ecoSTable, clone->emblAcc);
free(clone);
}
void GenomeDB_free(GenomeDB *gdb) {
Object_decRefCount(gdb);
if (Object_getRefCount(gdb) > 0) {
return;
} else if (Object_getRefCount(gdb) < 0) {
fprintf(stderr,"Error: Negative reference count for GenomeDB\n"
" Freeing it anyway\n");
}
if (gdb->name) free(gdb->name);
if (gdb->assembly) free(gdb->assembly);
free(gdb);
}
void SimpleFeature_freeImpl(SimpleFeature *sf) {
Object_decRefCount(sf);
if (Object_getRefCount(sf) > 0) {
return;
} else if (Object_getRefCount(sf) < 0) {
fprintf(stderr,"Error: Negative reference count for SimpleFeature\n"
" Freeing it anyway\n");
}
if (sf->displayLabel) EcoString_freeStr(ecoSTable, sf->displayLabel);
SeqFeature_freePtrs((SeqFeature *)sf);
free(sf);
}
void SyntenyRegion_free(SyntenyRegion *sr) {
Object_decRefCount(sr);
if (Object_getRefCount(sr) > 0) {
return;
} else if (Object_getRefCount(sr) < 0) {
fprintf(stderr,"Error: Negative reference count for SyntenyRegion\n"
" Freeing it anyway\n");
}
if (sr->chrName) EcoString_freeStr(ecoSTable, sr->chrName);
if (sr->hitChrName) EcoString_freeStr(ecoSTable, sr->hitChrName);
if (sr->seqType) EcoString_freeStr(ecoSTable, sr->seqType);
if (sr->hitSeqType) EcoString_freeStr(ecoSTable, sr->hitSeqType);
free(sr);
}
void PredictionTranscript_free(PredictionTranscript *trans) {
Object_decRefCount(trans);
if (Object_getRefCount(trans) > 0) {
return;
} else if (Object_getRefCount(trans) < 0) {
fprintf(stderr,"Error: Negative reference count for PredictionTranscript\n"
" Freeing it anyway\n");
}
if (trans->exonCoordMapper) Mapper_free(trans->exonCoordMapper);
if (trans->translateableExons) Vector_free(trans->translateableExons);
if (trans->exons) Vector_free(trans->exons);
free(trans);
}
void Analysis_free(Analysis *anal) {
Object_decRefCount(anal);
if (Object_getRefCount(anal) > 0) {
return;
} else if (Object_getRefCount(anal) < 0) {
fprintf(stderr,"Error: Negative reference count for Analysis\n"
" Freeing it anyway\n");
}
if (anal->db) free(anal->db);
if (anal->dbFile) free(anal->dbFile);
if (anal->program) free(anal->program);
if (anal->programFile) free(anal->programFile);
if (anal->gffSource) free(anal->gffSource);
if (anal->gffFeature) free(anal->gffFeature);
if (anal->module) free(anal->module);
if (anal->parameters) free(anal->parameters);
if (anal->created) free(anal->created);
if (anal->logicName) free(anal->logicName);
free(anal);
}
