Exemple #1
0
int test_sphere_point_depth()
{
  int j;
  dVector3 p,q;
  dMatrix3 R;
  dReal r,d;

  dSimpleSpace space(0);
  dGeomID sphere = dCreateSphere (0,1);
  dSpaceAdd (space,sphere);

  // ********** make a random sphere of radius r at position p

  r = dRandReal()+0.1;
  dGeomSphereSetRadius (sphere,r);
  dMakeRandomVector (p,3,1.0);
  dGeomSetPosition (sphere,p[0],p[1],p[2]);
  dRFromAxisAndAngle (R,dRandReal()*2-1,dRandReal()*2-1,
		      dRandReal()*2-1,dRandReal()*10-5);
  dGeomSetRotation (sphere,R);

  // ********** test center point has depth r

  if (dFabs(dGeomSpherePointDepth (sphere,p[0],p[1],p[2]) - r) > tol) FAILED();

  // ********** test point on surface has depth 0

  for (j=0; j<3; j++) q[j] = dRandReal()-0.5;
  dNormalize3 (q);
  for (j=0; j<3; j++) q[j] = q[j]*r + p[j];
  if (dFabs(dGeomSpherePointDepth (sphere,q[0],q[1],q[2])) > tol) FAILED();

  // ********** test point at random depth

  d = (dRandReal()*2-1) * r;
  for (j=0; j<3; j++) q[j] = dRandReal()-0.5;
  dNormalize3 (q);
  for (j=0; j<3; j++) q[j] = q[j]*(r-d) + p[j];
  if (dFabs(dGeomSpherePointDepth (sphere,q[0],q[1],q[2])-d) > tol) FAILED();

  PASSED();
}
Exemple #2
0
/*-------------------------------------------------------------------------
 * Function:	test_create
 *
 * Purpose:	Test trivial creating & closing memory pool
 *
 * Return:	Success:	0
 *
 *		Failure:	1
 *
 * Programmer:	Quincey Koziol
 *              Tuesday, May 3, 2005
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static int
test_create(void)
{
    H5MP_pool_t *mp;            /* Memory pool */
    H5MP_page_t *page;          /* Memory pool page */
    size_t free_size;           /* Free size in pool */

    /*
     * Test memory pool creation
     */
    TESTING("memory pool creation");

    /* Create a memory pool */
    if(NULL == (mp = H5MP_create((size_t)MPOOL_PAGE_SIZE, MPOOL_FLAGS)))
        TEST_ERROR

    /* Check free space */
    if(H5MP_get_pool_free_size(mp, &free_size) < 0)
        TEST_ERROR;
    if(free_size != 0)
        TEST_ERROR

    /* Check first page */
    if (H5MP_get_pool_first_page(mp, &page) < 0)
        TEST_ERROR;
    if(page != NULL)
        TEST_ERROR

    /* Close the memory pool */
    if (H5MP_close(mp) < 0)
        TEST_ERROR

    PASSED();

    return 0;

error:
    H5E_BEGIN_TRY {
    } H5E_END_TRY;
    return 1;
} /* test_create() */
Exemple #3
0
/*-------------------------------------------------------------------------
 * Purpose:     Creates a group with a very long name
 *
 * Return:      Success:	0
 *
 * 		Failure:	number of errors
 *
 * Programmer:  Robb Matzke <*****@*****.**> 2002-03-28
 *
 * Modifications:
 *-------------------------------------------------------------------------
 */
static int
test_long(hid_t file)
{
    hid_t       g1=-1, g2=-1;
    char        *name1=NULL, *name2=NULL;
    size_t      namesize=40960, i;

    TESTING("long names");

    /* Group names */
    name1 = malloc(namesize);
    for (i=0; i<namesize; i++)
        name1[i] = (char)('A' + i%26);
    name1[namesize-1] = '\0';
    name2 = malloc(2*namesize + 2);
    sprintf(name2, "%s/%s", name1, name1);

    /* Create groups */
    if ((g1=H5Gcreate(file, name1, 0))<0) goto error;
    if ((g2=H5Gcreate(g1, name1, 0))<0) goto error;
    H5Gclose(g1);
    H5Gclose(g2);

    /* Open groups */
    if ((g1=H5Gopen(file, name1))<0) goto error;
    if ((g2=H5Gopen(file, name2))<0) goto error;
    H5Gclose(g1);
    H5Gclose(g2);

    PASSED();
    return 0;

 error:
    H5E_BEGIN_TRY {
        H5Gclose(g1);
        H5Gclose(g2);
    } H5E_END_TRY;
    return 1;
}
Exemple #4
0
/*-------------------------------------------------------------------------
 * Function:	test_1f
 *
 * Purpose:	Test multiple external files for a dataset.
 *
 * Return:	Success:	0
 *
 *		Failure:	number of errors
 *
 * Programmer:	Robb Matzke
 *              Monday, November 23, 1998
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static int
test_1f(hid_t file)
{
    hid_t	dcpl=-1;		/*dataset creation properties	*/
    hid_t	space=-1;		/*data space			*/
    hid_t	dset=-1;		/*dataset			*/
    hsize_t	cur_size[1];		/*data space current size	*/
    hsize_t	max_size[1];		/*data space maximum size	*/

    TESTING("multiple external files");

    if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) goto error;
    cur_size[0] = max_size[0] = 100;
    if(H5Pset_external(dcpl, "ext1.data", (off_t)0,
	(hsize_t)(max_size[0]*sizeof(int)/4)) < 0) goto error;
    if(H5Pset_external(dcpl, "ext2.data", (off_t)0,
	(hsize_t)(max_size[0]*sizeof(int)/4)) < 0) goto error;
    if(H5Pset_external(dcpl, "ext3.data", (off_t)0,
	(hsize_t)(max_size[0]*sizeof(int)/4)) < 0) goto error;
    if(H5Pset_external(dcpl, "ext4.data", (off_t)0,
	(hsize_t)(max_size[0]*sizeof(int)/4)) < 0) goto error;
    if((space = H5Screate_simple(1, cur_size, max_size)) < 0) goto error;
    if((dset = H5Dcreate2(file, "dset6", H5T_NATIVE_INT, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
	goto error;
    if(H5Dclose(dset) < 0) goto error;
    if(H5Sclose(space) < 0) goto error;
    if(H5Pclose(dcpl) < 0) goto error;

    PASSED();
    return 0;

error:
    H5E_BEGIN_TRY {
	H5Dclose(dset);
	H5Pclose(dcpl);
	H5Sclose(space);
    } H5E_END_TRY;
    return 1;
}
Exemple #5
0
/*-------------------------------------------------------------------------
 * Function:	test_1d
 *
 * Purpose:	Test a single external file which is large enough for the
 *		current data size but not large enough for the eventual size.
 *
 * Return:	Success:	0
 *
 *		Failure:	number of errors
 *
 * Programmer:	Robb Matzke
 *              Monday, November 23, 1998
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static int
test_1d(hid_t file)
{
    hid_t	dcpl=-1;		/*dataset creation properties	*/
    hid_t	space=-1;		/*data space			*/
    hid_t	dset=-1;		/*dataset			*/
    hsize_t	cur_size[1];		/*current data space size       */
    hsize_t	max_size[1];		/*maximum data space size	*/

    TESTING("extendible dataspace, external storage is too small");

    if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) goto error;
    cur_size[0] = 100;
    max_size[0] = 200;
    if(H5Pset_external(dcpl, "ext1.data", (off_t)0,
	(hsize_t)(max_size[0] * sizeof(int) - 1)) < 0) goto error;
    if((space = H5Screate_simple(1, cur_size, max_size)) < 0) goto error;
    H5E_BEGIN_TRY {
	dset = H5Dcreate2(file, "dset4", H5T_NATIVE_INT, space, H5P_DEFAULT, dcpl, H5P_DEFAULT);
    } H5E_END_TRY;
    if(dset >= 0) {
	H5_FAILED();
	puts("    Small external file succeeded instead of failing.");
	goto error;
    }
    if(H5Sclose(space) < 0) goto error;
    if(H5Pclose(dcpl) < 0) goto error;

    PASSED();
    return 0;

 error:
    H5E_BEGIN_TRY {
	H5Dclose(dset);
	H5Pclose(dcpl);
	H5Sclose(space);
    } H5E_END_TRY;
    return 1;
}
Exemple #6
0
/* 
 * Test drive for testing the szip compression feature with SD interface 
 */
extern int 
test_szip_compression ()
{
    int num_errs = 0;

    /* Output message about test being performed */
    TESTING("szip compression for datasets (tszip.c)");

#ifdef H4_HAVE_SZIP_ENCODER
    /* Test creating and writing SZIP compressed data only when szlib encoder
	is available */
    num_errs = num_errs + test_szip_SDS8bit();
    num_errs = num_errs + test_szip_SDS16bit();
    num_errs = num_errs + test_szip_SDS32bit();
    num_errs = num_errs + test_szip_SDSfl32bit();
    num_errs = num_errs + test_szip_SDSfl64bit();
    num_errs = num_errs + test_szip_chunk();
    num_errs = num_errs + test_szip_unlimited();
    num_errs = num_errs + test_szip_chunk_3d();
#else
    /* printf("Test creating and writing SZIP compressed data \tSKIPPED\n"); */
#endif

#ifdef H4_HAVE_LIBSZ
    /* Test reading szipped data when szlib is available, either with encoder
	or only decoder */
    num_errs = num_errs + test_getszipdata();
#else
    /* printf("Test reading SZIP compressed data \tSKIPPED\n"); */
#endif

    /* Test reading szip compression information and should pass with or 
	without SZIP library */
    num_errs = num_errs + test_getszipinfo();

    if (num_errs == 0) PASSED();
    return num_errs;
}
Exemple #7
0
/*-------------------------------------------------------------------------
 *
 * Function:    group_version_macros
 *
 * Purpose:     Test H5G version compatibility macros.
 *
 * Return:      Success:        0
 *              Failure:        -1
 *
 * Programmer:  Neil Fortner
 *              Saturday, October 11, 2008
 *
 *-------------------------------------------------------------------------
 */
static int
group_version_macros(hid_t fapl)
{
    hid_t   fid, gid;
    char    filename[NAME_BUF_SIZE]; 

    /* Output message about test being performed */
    TESTING("H5G version compatibility macros");

    /* Create file */
    h5_fixname(FILENAME[1], fapl, filename, sizeof filename);
    if ((fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR;

    /* Create a group (test H5Gcreate1) */
    if ((gid = H5Gcreate1(fid, "group", 0)) < 0) TEST_ERROR;

    /* Close group */
    if (H5Gclose(gid) < 0) TEST_ERROR;

    /* Open group (test H5Gopen1) */
    if ((gid = H5Gopen1(fid, "group")) < 0) TEST_ERROR;

    /* Close group */
    if (H5Gclose(gid) < 0) TEST_ERROR;

    /* Close file */
    if (H5Fclose(fid) < 0) TEST_ERROR;

    PASSED();
    return 0;

error:
    H5E_BEGIN_TRY {
        H5Fclose(gid);
        H5Gclose(fid);
    } H5E_END_TRY
    return -1;
} /* end group_version_macros() */
Exemple #8
0
/*-------------------------------------------------------------------------
 * Function:	test_filters_for_groups
 *
 * Purpose:	Tests creating group with dynamically loaded filters
 *
 * Return:	Success:	0
 *		Failure:	-1
 *
 * Programmer:	Raymond Lu
 *              1 April 2013
 *
 *-------------------------------------------------------------------------
 */
static herr_t
test_filters_for_groups(hid_t file)
{
    hid_t	gcpl, gid, group;
    int         i;
    char        gname[256];

    TESTING("Testing DYNLIB3 filter for group");

    if((gcpl = H5Pcreate(H5P_GROUP_CREATE)) < 0) goto error;
  
    /* Use DYNLIB3 for creating groups */ 
    if(H5Pset_filter (gcpl, H5Z_FILTER_DYNLIB3, H5Z_FLAG_MANDATORY, (size_t)0, NULL) < 0) goto error;

    /* Create a group using this filter */
    if((gid = H5Gcreate2(file, "group1", H5P_DEFAULT, gcpl, H5P_DEFAULT)) < 0) goto error;

    /* Create multiple groups under "group1" */
    for (i=0; i < GROUP_ITERATION; i++) {
        sprintf(gname, "group_%d", i);
        if((group = H5Gcreate2(gid, gname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto error;
        if(H5Gclose(group) < 0) goto error; 
    }

    /* Close the group */
    if(H5Gclose(gid) < 0) goto error;

    /* Clean up objects used for this test */
    if(H5Pclose (gcpl) < 0) goto error;

    PASSED();

    return 0;

error:
    return -1;
}
Exemple #9
0
/*
 * Get current value, request timeout for next value, increment counter, check
 * notified correctly.
 */
static void
test03(void)
{
    uint32_t cur_value;
    L4_Word_t result;
    L4_Word_t notifybits = 0x1;
    L4_MsgTag_t tag;
    L4_Word_t mask;

    printf("%s: ", __func__);

    result = counter_current_value(&cur_value);
    if (result == 0) {
        FAILED();
        return;
    }
    result = counter_request(cur_value + 1, main_tid, notifybits);
    if (result == 0) {
        FAILED();
        return;
    }
    result = counter_increment(1);
    if (result == 0) {
        FAILED();
        return;
    }
    L4_Set_NotifyMask(notifybits);
    L4_Accept(L4_NotifyMsgAcceptor);
    tag = L4_WaitNotify(&mask);
    if (L4_IpcFailed(tag)) {
        FAILED();
        return;
    }

    PASSED();
}
Exemple #10
0
/*-------------------------------------------------------------------------
 * Function:	main
 *
 * Purpose:     Exercise private object header behavior and routines
 *
 * Return:	Success:        0
 *		Failure:        1
 *
 * Programmer:	Robb Matzke
 *              Tuesday, November 24, 1998
 *
 *-------------------------------------------------------------------------
 */
int
main(void)
{
    hid_t	fapl = -1, file = -1;
    hid_t	dset = -1;
    H5F_t	*f = NULL;
    char	filename[1024];
    H5O_hdr_info_t hdr_info;            /* Object info */
    H5O_loc_t	oh_loc, oh_loc2;        /* Object header locations */
    time_t	time_new, ro;
    int         chunkno;                /* Chunk index for message */
    int		i;                      /* Local index variable */
    hbool_t     b;                      /* Index for "new format" loop */
    herr_t      ret;                    /* Generic return value */

    /* Reset library */
    h5_reset();
    fapl = h5_fileaccess();
    h5_fixname(FILENAME[0], fapl, filename, sizeof filename);

    /* Loop over old & new formats */
    for(b = FALSE; b <= TRUE; b++) {
        /* Display info about testing */
        if(b)
            HDputs("Using new file format:");
        else
            HDputs("Using default file format:");

        /* Set the format to use for the file */
        if(H5Pset_libver_bounds(fapl, (b ? H5F_LIBVER_LATEST : H5F_LIBVER_EARLIEST), H5F_LIBVER_LATEST) < 0)
            FAIL_STACK_ERROR

	/* test on object continuation block */
	if(test_cont(filename, fapl) < 0)
            FAIL_STACK_ERROR

        /* Create the file to operate on */
        if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
            TEST_ERROR
        if(NULL == (f = (H5F_t *)H5I_object(file)))
            FAIL_STACK_ERROR
        if (H5AC_ignore_tags(f) < 0) {
	    H5_FAILED();
	    H5Eprint2(H5E_DEFAULT, stdout);
	    goto error;
        }


        /*
         * Test object header creation
         * (using default group creation property list only because it's convenient)
         */
        TESTING("object header creation");
        HDmemset(&oh_loc, 0, sizeof(oh_loc));
        if(H5O_create(f, H5P_DATASET_XFER_DEFAULT, (size_t)64, (size_t)0, H5P_GROUP_CREATE_DEFAULT, &oh_loc/*out*/) < 0)
            FAIL_STACK_ERROR
        PASSED();


        /* create a new message */
        TESTING("message creation");
        time_new = 11111111;
        if(H5O_msg_create(&oh_loc, H5O_MTIME_NEW_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR
        if(1 != H5O_link(&oh_loc, 1, H5P_DATASET_XFER_DEFAULT))
            FAIL_STACK_ERROR
        if(H5AC_flush(f, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR
        if(H5AC_expunge_entry(f, H5P_DATASET_XFER_DEFAULT, H5AC_OHDR, oh_loc.addr, H5AC__NO_FLAGS_SET) < 0)
            FAIL_STACK_ERROR
        if(NULL == H5O_msg_read(&oh_loc, H5O_MTIME_NEW_ID, &ro, H5P_DATASET_XFER_DEFAULT))
            FAIL_STACK_ERROR
        if(ro != time_new)
            TEST_ERROR
        PASSED();


        /*
         * Test modification of an existing message.
         */
        TESTING("message modification");
        time_new = 33333333;
        if(H5O_msg_write(&oh_loc, H5O_MTIME_NEW_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR
        if(H5AC_flush(f, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR
        if(H5AC_expunge_entry(f, H5P_DATASET_XFER_DEFAULT, H5AC_OHDR, oh_loc.addr, H5AC__NO_FLAGS_SET) < 0)
            FAIL_STACK_ERROR
        if(NULL == H5O_msg_read(&oh_loc, H5O_MTIME_NEW_ID, &ro, H5P_DATASET_XFER_DEFAULT))
            FAIL_STACK_ERROR
        if(ro != time_new)
            TEST_ERROR

        /* Make certain that chunk #0 in the object header can be encoded with a 1-byte size */
        if(H5O_get_hdr_info(&oh_loc, H5P_DATASET_XFER_DEFAULT, &hdr_info) < 0)
            FAIL_STACK_ERROR
        if(hdr_info.space.total >=256)
            TEST_ERROR

        PASSED();

        /*
         * Test creation of a bunch of messages one after another to see
         * what happens when the object header overflows in core.
         * (Use 'old' MTIME message here, because it is large enough to be
         *  replaced with a continuation message (the new one is too small)
         *  and the library doesn't understand how to migrate more than one
         *  message from an object header currently - QAK - 10/8/03)
         */
        TESTING("object header overflow in memory");
        for(i = 0; i < 40; i++) {
            time_new = (i + 1) * 1000 + 1000000;
            if(H5O_msg_create(&oh_loc, H5O_MTIME_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
                FAIL_STACK_ERROR
        } /* end for */
        if(H5AC_flush(f, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR
        if(H5AC_expunge_entry(f, H5P_DATASET_XFER_DEFAULT, H5AC_OHDR, oh_loc.addr, H5AC__NO_FLAGS_SET) < 0)
            FAIL_STACK_ERROR

        /* Make certain that chunk #0 in the object header will be encoded with a 2-byte size */
        if(H5O_get_hdr_info(&oh_loc, H5P_DATASET_XFER_DEFAULT, &hdr_info) < 0)
            FAIL_STACK_ERROR
        if(hdr_info.space.total < 256)
            TEST_ERROR

        PASSED();

        /* Close & re-open file & object header */
        /* (makes certain that an object header in the new format that transitions
         *  between 1-byte chunk #0 size encoding and 2-byte chunk #0 size encoding
         *  works correctly - QAK)
         */
        TESTING("close & re-open object header");
        if(H5O_close(&oh_loc) < 0)
            FAIL_STACK_ERROR
        if(H5Fclose(file) < 0)
            FAIL_STACK_ERROR
        if((file = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
            FAIL_STACK_ERROR
        if(NULL == (f = (H5F_t *)H5I_object(file)))
            FAIL_STACK_ERROR
        if (H5AC_ignore_tags(f) < 0)
            FAIL_STACK_ERROR
        oh_loc.file = f;
        if(H5O_open(&oh_loc) < 0)
            FAIL_STACK_ERROR
        PASSED();

        /*
         * Test creation of a bunch of messages one after another to see
         * what happens when the object header overflows on disk.
         */
        TESTING("object header overflow on disk");
        for(i = 0; i < 10; i++) {
            time_new = (i + 1) * 1000 + 10;
            if(H5O_msg_create(&oh_loc, H5O_MTIME_NEW_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
                FAIL_STACK_ERROR
            if(H5AC_flush(f, H5P_DATASET_XFER_DEFAULT) < 0)
                FAIL_STACK_ERROR
            if(H5AC_expunge_entry(f, H5P_DATASET_XFER_DEFAULT, H5AC_OHDR, oh_loc.addr, H5AC__NO_FLAGS_SET) < 0)
                FAIL_STACK_ERROR
        } /* end for */
        PASSED();

        /*
         * Delete all time messages.
         */
        TESTING("message deletion");
        if(H5O_msg_remove(&oh_loc, H5O_MTIME_NEW_ID, H5O_ALL, TRUE, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR
        if(H5O_msg_remove(&oh_loc, H5O_MTIME_ID, H5O_ALL, TRUE, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR
        if(H5O_msg_read(&oh_loc, H5O_MTIME_NEW_ID, &ro, H5P_DATASET_XFER_DEFAULT))
            FAIL_STACK_ERROR
        if(H5O_msg_read(&oh_loc, H5O_MTIME_ID, &ro, H5P_DATASET_XFER_DEFAULT))
            FAIL_STACK_ERROR
        PASSED();


        /*
         * Constant message handling.
         * (can't write to them, but should be able to remove them)
         */
        TESTING("constant message handling");
        time_new = 22222222;
        if(H5O_msg_create(&oh_loc, H5O_MTIME_NEW_ID, H5O_MSG_FLAG_CONSTANT, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR
        if(H5AC_flush(f, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR
        if(H5AC_expunge_entry(f, H5P_DATASET_XFER_DEFAULT, H5AC_OHDR, oh_loc.addr, H5AC__NO_FLAGS_SET) < 0)
            FAIL_STACK_ERROR
        if(NULL == H5O_msg_read(&oh_loc, H5O_MTIME_NEW_ID, &ro, H5P_DATASET_XFER_DEFAULT))
            FAIL_STACK_ERROR
        if(ro != time_new)
            TEST_ERROR
        time_new = 33333333;
        H5E_BEGIN_TRY {
            ret = H5O_msg_write(&oh_loc, H5O_MTIME_NEW_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT);
        } H5E_END_TRY;
        if(ret >= 0)
            TEST_ERROR
        if(H5O_msg_remove(&oh_loc, H5O_MTIME_NEW_ID, H5O_ALL, TRUE, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR
        PASSED();


        /* release resources */
        TESTING("object header closing");
        if(H5O_close(&oh_loc) < 0)
            FAIL_STACK_ERROR
        PASSED();

        /*
         * Test moving message to first chunk
         */
        TESTING("locking messages");
        HDmemset(&oh_loc, 0, sizeof(oh_loc));
        if(H5O_create(f, H5P_DATASET_XFER_DEFAULT, (size_t)64, (size_t)0, H5P_GROUP_CREATE_DEFAULT, &oh_loc/*out*/) < 0)
            FAIL_STACK_ERROR
        if(1 != H5O_link(&oh_loc, 1, H5P_DATASET_XFER_DEFAULT))
            FAIL_STACK_ERROR

        /* Create second object header, to guarantee that first object header uses multiple chunks */
        HDmemset(&oh_loc2, 0, sizeof(oh_loc2));
        if(H5O_create(f, H5P_DATASET_XFER_DEFAULT, (size_t)64, (size_t)0, H5P_GROUP_CREATE_DEFAULT, &oh_loc2/*out*/) < 0)
            FAIL_STACK_ERROR
        if(1 != H5O_link(&oh_loc2, 1, H5P_DATASET_XFER_DEFAULT))
            FAIL_STACK_ERROR

        /* Fill object header with messages, creating multiple chunks */
        for(i = 0; i < 10; i++) {
            time_new = (i + 1) * 1000 + 10;
            if(H5O_msg_create(&oh_loc, H5O_MTIME_NEW_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
                FAIL_STACK_ERROR
        } /* end for */

        /* Get # of object header chunks */
        if(H5O_get_hdr_info(&oh_loc, H5P_DATASET_XFER_DEFAULT, &hdr_info) < 0)
            FAIL_STACK_ERROR
        if(hdr_info.nchunks != 2)
            TEST_ERROR

        /* Add message to lock to object header */
        time_new = 11111111;
        if(H5O_msg_create(&oh_loc, H5O_MTIME_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR

        /* Verify chunk index for message */
        if((chunkno = H5O_msg_get_chunkno(&oh_loc, H5O_MTIME_ID, H5P_DATASET_XFER_DEFAULT)) < 0)
            FAIL_STACK_ERROR
        if(chunkno != 1)
            TEST_ERROR

        /* Lock the message into the chunk */
        if(H5O_msg_lock(&oh_loc, H5O_MTIME_ID, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR

        /* Attempt to lock the message twice */
        H5E_BEGIN_TRY {
            ret = H5O_msg_lock(&oh_loc, H5O_MTIME_ID, H5P_DATASET_XFER_DEFAULT);
        } H5E_END_TRY;
        if(ret >= 0)
            TEST_ERROR

        /* Delete all the other messages, which would move the message into
         * chunk #0, if it wasn't locked
         */
        if(H5O_msg_remove(&oh_loc, H5O_MTIME_NEW_ID, H5O_ALL, TRUE, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR

        /* Verify chunk index for message */
        if((chunkno = H5O_msg_get_chunkno(&oh_loc, H5O_MTIME_ID, H5P_DATASET_XFER_DEFAULT)) < 0)
            FAIL_STACK_ERROR
        if(chunkno != 1)
            TEST_ERROR

        /* Unlock the message */
        if(H5O_msg_unlock(&oh_loc, H5O_MTIME_ID, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR

        /* Attempt to unlock the message twice */
        H5E_BEGIN_TRY {
            ret = H5O_msg_unlock(&oh_loc, H5O_MTIME_ID, H5P_DATASET_XFER_DEFAULT);
        } H5E_END_TRY;
        if(ret >= 0)
            TEST_ERROR

        /* Close object headers */
        if(H5O_close(&oh_loc2) < 0)
            FAIL_STACK_ERROR
        if(H5O_close(&oh_loc) < 0)
            FAIL_STACK_ERROR

        /* Open first object header */
        HDmemset(&oh_loc, 0, sizeof(oh_loc));
        if(H5O_create(f, H5P_DATASET_XFER_DEFAULT, (size_t)64, (size_t)0, H5P_GROUP_CREATE_DEFAULT, &oh_loc/*out*/) < 0)
            FAIL_STACK_ERROR
        if(1 != H5O_link(&oh_loc, 1, H5P_DATASET_XFER_DEFAULT))
            FAIL_STACK_ERROR

        /* Create second object header, to guarantee that first object header uses multiple chunks */
        HDmemset(&oh_loc2, 0, sizeof(oh_loc2));
        if(H5O_create(f, H5P_DATASET_XFER_DEFAULT, (size_t)64, (size_t)0, H5P_GROUP_CREATE_DEFAULT, &oh_loc2/*out*/) < 0)
            FAIL_STACK_ERROR
        if(1 != H5O_link(&oh_loc2, 1, H5P_DATASET_XFER_DEFAULT))
            FAIL_STACK_ERROR

        /* Add message to move to object header */
        time_new = 11111111;
        if(H5O_msg_create(&oh_loc, H5O_MTIME_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR

        /* Verify chunk index for message */
        if((chunkno = H5O_msg_get_chunkno(&oh_loc, H5O_MTIME_ID, H5P_DATASET_XFER_DEFAULT)) < 0)
            FAIL_STACK_ERROR
        if(chunkno != 0)
            TEST_ERROR

        /* Lock the message into the chunk */
        if(H5O_msg_lock(&oh_loc, H5O_MTIME_ID, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR

        /* Fill object header with messages, creating multiple chunks */
        /* (would normally move locked message to new chunk) */
        for(i = 0; i < 10; i++) {
            time_new = (i + 1) * 1000 + 10;
            if(H5O_msg_create(&oh_loc, H5O_MTIME_NEW_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
                FAIL_STACK_ERROR
        } /* end for */

        /* Get # of object header chunks */
        if(H5O_get_hdr_info(&oh_loc, H5P_DATASET_XFER_DEFAULT, &hdr_info) < 0)
            FAIL_STACK_ERROR
        if(hdr_info.nchunks != 2)
            TEST_ERROR

        /* Verify chunk index for message */
        if((chunkno = H5O_msg_get_chunkno(&oh_loc, H5O_MTIME_ID, H5P_DATASET_XFER_DEFAULT)) < 0)
            FAIL_STACK_ERROR
        if(chunkno != 0)
            TEST_ERROR

        /* Unlock the message */
        if(H5O_msg_unlock(&oh_loc, H5O_MTIME_ID, H5P_DATASET_XFER_DEFAULT) < 0)
            FAIL_STACK_ERROR

        /* Close object headers */
        if(H5O_close(&oh_loc2) < 0)
            FAIL_STACK_ERROR
        if(H5O_close(&oh_loc) < 0)
            FAIL_STACK_ERROR

        PASSED();


        /* Test reading datasets with undefined object header messages
         * and the various "fail/mark if unknown" object header message flags
         */
        HDputs("Accessing objects with unknown header messages:");
        {
            hid_t file2;                    /* File ID for 'bogus' object file */
            hid_t sid;                      /* Dataspace ID */
            hid_t aid;                      /* Attribute ID */
            const char *testfile = H5_get_srcdir_filename(FILE_BOGUS);

            TESTING("object with unknown header message and no flags set");

            /* Open the file with objects that have unknown header messages (generated with gen_bogus.c) */
            if((file2 = H5Fopen(testfile, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0)
                TEST_ERROR

            /* Open the dataset with the unknown header message, but no extra flags */
            if((dset = H5Dopen2(file2, "/Dataset1", H5P_DEFAULT)) < 0)
                TEST_ERROR
            if(H5Dclose(dset) < 0)
                TEST_ERROR

            PASSED();

            TESTING("object in r/o file with unknown header message & 'fail if unknown and open for write' flag set");

            /* Open the dataset with the unknown header message, and "fail if unknown and open for write" flag */
            if((dset = H5Dopen2(file2, "/Dataset2", H5P_DEFAULT)) < 0)
                TEST_ERROR
            if(H5Dclose(dset) < 0)
                TEST_ERROR

            PASSED();

            TESTING("object in r/o file with unknown header message & 'fail if unknown always' flag set");

            /* Attempt to open the dataset with the unknown header message, and "fail if unknown always" flag */
            H5E_BEGIN_TRY {
                dset = H5Dopen2(file2, "/Dataset3", H5P_DEFAULT);
            } H5E_END_TRY;
            if(dset >= 0) {
                H5Dclose(dset);
                TEST_ERROR
            } /* end if */

            PASSED();

            TESTING("object with unknown header message & 'mark if unknown' flag set");

            /* Copy object with "mark if unknown" flag on message into file that can be modified */
            if(H5Ocopy(file2, "/Dataset4", file, "/Dataset4", H5P_DEFAULT, H5P_DEFAULT) < 0)
                TEST_ERROR

            /* Close the file we created (to flush changes to file) */
            if(H5Fclose(file) < 0)
                TEST_ERROR

            /* Re-open the file created, with read-only permissions */
            if((file = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0)
                TEST_ERROR

            /* Open the dataset with the "mark if unknown" message */
            if((dset = H5Dopen2(file, "/Dataset4", H5P_DEFAULT)) < 0)
                TEST_ERROR

            /* Check that the "unknown" message was _NOT_ marked */
            if(H5O_check_msg_marked_test(dset, FALSE) < 0)
                FAIL_STACK_ERROR

            /* Close the dataset */
            if(H5Dclose(dset) < 0)
                TEST_ERROR

            /* Close the file we created (to flush change to object header) */
            if(H5Fclose(file) < 0)
                TEST_ERROR

            /* Re-open the file created */
            if((file = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
                TEST_ERROR

            /* Open the dataset with the "mark if unknown" message */
            if((dset = H5Dopen2(file, "/Dataset4", H5P_DEFAULT)) < 0)
                TEST_ERROR

            /* Create data space */
            if((sid = H5Screate(H5S_SCALAR)) < 0)
                FAIL_STACK_ERROR

            /* Create an attribute, to get the object header into write access */
            if((aid = H5Acreate2(dset, "Attr", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
                FAIL_STACK_ERROR

            /* Close dataspace */
            if(H5Sclose(sid) < 0)
                FAIL_STACK_ERROR

            /* Close attribute */
            if(H5Aclose(aid) < 0)
                FAIL_STACK_ERROR

            /* Close the dataset */
            if(H5Dclose(dset) < 0)
                TEST_ERROR

            /* Close the file we created (to flush change to object header) */
            if(H5Fclose(file) < 0)
                TEST_ERROR

            /* Re-open the file created */
            if((file = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0)
                TEST_ERROR

            /* Re-open the dataset with the "mark if unknown" message */
            if((dset = H5Dopen2(file, "/Dataset4", H5P_DEFAULT)) < 0)
                TEST_ERROR

            /* Check that the "unknown" message was marked */
            if(H5O_check_msg_marked_test(dset, TRUE) < 0)
                FAIL_STACK_ERROR

            /* Close the dataset */
            if(H5Dclose(dset) < 0)
                TEST_ERROR

            /* Close the file with the bogus objects */
            if(H5Fclose(file2) < 0)
                TEST_ERROR

            PASSED();

            /* Open the file with objects that have unknown header messages (generated with gen_bogus.c) with RW intent this time */
            if((file2 = H5Fopen(testfile, H5F_ACC_RDWR, H5P_DEFAULT)) < 0)
                TEST_ERROR

            TESTING("object in r/w file with unknown header message & 'fail if unknown and open for write' flag set");

            /* Attempt to open the dataset with the unknown header message, and "fail if unknown and open for write" flag */
            H5E_BEGIN_TRY {
                dset = H5Dopen2(file2, "/Dataset2", H5P_DEFAULT);
            } H5E_END_TRY;
            if(dset >= 0) {
                H5Dclose(dset);
                TEST_ERROR
            } /* end if */

            PASSED();

            TESTING("object in r/w file with unknown header message & 'fail if unknown always' flag set");

            /* Attempt to open the dataset with the unknown header message, and "fail if unknown always" flag */
            H5E_BEGIN_TRY {
                dset = H5Dopen2(file2, "/Dataset3", H5P_DEFAULT);
            } H5E_END_TRY;
            if(dset >= 0) {
                H5Dclose(dset);
                TEST_ERROR
            } /* end if */
Exemple #11
0
/*-------------------------------------------------------------------------
 * Function:	test_invalid_parameters
 *
 * Purpose:	Test invalid parameters for H5DOwrite_chunk
 *
 * Return:	Success:	0
 *
 *		Failure:	1
 *
 * Programmer:  Raymond Lu	
 *              30 November 2012
 *
 *-------------------------------------------------------------------------
 */
static int
test_invalid_parameters(hid_t file)
{
    hid_t       dataspace = -1, dataset = -1;
    hid_t       mem_space = -1;
    hid_t       cparms = -1, dxpl = -1;
    hsize_t     dims[2]  = {NX, NY};        
    hsize_t     chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
    herr_t      status;
    int         i, j, n;

    unsigned    filter_mask = 0;
    int         direct_buf[CHUNK_NX][CHUNK_NY];
    hsize_t     offset[2] = {0, 0};
    size_t      buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
    int         aggression = 9;     /* Compression aggression setting */

    TESTING("invalid parameters for H5DOwrite_chunk");

    /*
     * Create the data space with unlimited dimensions.
     */
    if((dataspace = H5Screate_simple(RANK, dims, NULL)) < 0)
        goto error;

    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
        goto error;

    /*
     * Modify dataset creation properties
     */
    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
        goto error;

    /*
     * Create a new contiguous dataset to verify H5DOwrite_chunk doesn't work
     */
    if((dataset = H5Dcreate2(file, DATASETNAME5, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
			cparms, H5P_DEFAULT)) < 0)
        goto error;

    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
        goto error;

    /* Initialize data for one chunk */
    for(i = n = 0; i < CHUNK_NX; i++)
        for(j = 0; j < CHUNK_NY; j++) {
	    direct_buf[i][j] = n++;
    }

    /* Try to write the chunk data to contiguous dataset.  It should fail */
    offset[0] = CHUNK_NX;
    offset[1] = CHUNK_NY;

    H5E_BEGIN_TRY {
        if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
            goto error;
    } H5E_END_TRY;

    if(H5Dclose(dataset) < 0)
        goto error;

    /* Create a chunked dataset with compression filter */
    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
        goto error;

    if((status = H5Pset_deflate( cparms, (unsigned ) aggression)) < 0)
        goto error;

    /*
     * Create a new dataset within the file using cparms
     * creation properties.
     */
    if((dataset = H5Dcreate2(file, DATASETNAME6, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
			cparms, H5P_DEFAULT)) < 0)
        goto error;

    /* Check invalid dataset ID */ 
    H5E_BEGIN_TRY {
        if((status = H5DOwrite_chunk((hid_t)-1, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
            goto error;
    } H5E_END_TRY;

    /* Check invalid DXPL ID */
    H5E_BEGIN_TRY {
        if((status = H5DOwrite_chunk(dataset, (hid_t)-1, filter_mask, offset, buf_size, direct_buf)) != FAIL)
            goto error;
    } H5E_END_TRY;

    /* Check invalid OFFSET */
    H5E_BEGIN_TRY {
        if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, NULL, buf_size, direct_buf)) != FAIL)
            goto error;
    } H5E_END_TRY;

    /* Check when OFFSET is out of dataset range */
    offset[0] = NX + 1;
    offset[1] = NY;
    H5E_BEGIN_TRY {
        if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
            goto error;
    } H5E_END_TRY;

    /* Check when OFFSET is not on chunk boundary */
    offset[0] = CHUNK_NX;
    offset[1] = CHUNK_NY + 1;
    H5E_BEGIN_TRY {
        if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
            goto error;
    } H5E_END_TRY;

    /* Check invalid buffer size */
    offset[0] = CHUNK_NX;
    offset[1] = CHUNK_NY;
    buf_size = 0; 
    H5E_BEGIN_TRY {
        if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
            goto error;
    } H5E_END_TRY;

    /* Check invalid data buffer */
    buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
    H5E_BEGIN_TRY {
        if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, NULL)) != FAIL)
            goto error;
    } H5E_END_TRY;

    if(H5Dclose(dataset) < 0)
        goto error;

    /*
     * Close/release resources.
     */
    H5Sclose(mem_space);
    H5Sclose(dataspace);
    H5Pclose(cparms);
    H5Pclose(dxpl);
    
    PASSED();
    return 0;

error:
    H5E_BEGIN_TRY {
        H5Dclose(dataset);
        H5Sclose(mem_space);
        H5Sclose(dataspace);
        H5Pclose(cparms);
        H5Pclose(dxpl);
    } H5E_END_TRY;

    return 1;
}
Exemple #12
0
/*-------------------------------------------------------------------------
 * Function:	test_data_conv
 *
 * Purpose:	Test data conversion
 *
 * Return:	Success:	0
 *
 *		Failure:	1
 *
 * Programmer:  Raymond Lu	
 *              30 November 2012
 *
 *-------------------------------------------------------------------------
 */
static int
test_data_conv(hid_t file)
{
    typedef struct {
	int a, b, c[4], d, e;
    } src_type_t;
    typedef struct {
	int a,    c[4],    e;
    } dst_type_t;

    hid_t       dataspace = -1, dataset = -1;
    hid_t       mem_space = -1;
    hid_t       cparms = -1, dxpl = -1;
    hsize_t     dims[2]  = {NX, NY};        
    hsize_t     maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
    hsize_t     chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
    herr_t      status;
    int         i, j, n;
    const hsize_t	four = 4;
    hid_t	st=-1, dt=-1;
    hid_t       array_dt;

    unsigned    filter_mask = 0;
    src_type_t  direct_buf[CHUNK_NX][CHUNK_NY];
    dst_type_t  check_chunk[CHUNK_NX][CHUNK_NY];
    hsize_t     offset[2] = {0, 0};
    size_t      buf_size = CHUNK_NX*CHUNK_NY*sizeof(src_type_t);

    hsize_t start[2];  /* Start of hyperslab */
    hsize_t stride[2]; /* Stride of hyperslab */
    hsize_t count[2];  /* Block count */
    hsize_t block[2];  /* Block sizes */

    TESTING("data conversion for H5DOwrite_chunk");

    /*
     * Create the data space with unlimited dimensions.
     */
    if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
        goto error;

    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
        goto error;

    /*
     * Modify dataset creation properties, i.e. enable chunking
     */
    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
        goto error;

    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
        goto error;

    /* Build hdf5 datatypes */
    array_dt = H5Tarray_create2(H5T_NATIVE_INT, 1, &four);
    if((st = H5Tcreate(H5T_COMPOUND, sizeof(src_type_t))) < 0 ||
            H5Tinsert(st, "a", HOFFSET(src_type_t, a), H5T_NATIVE_INT) < 0 ||
            H5Tinsert(st, "b", HOFFSET(src_type_t, b), H5T_NATIVE_INT) < 0 ||
            H5Tinsert(st, "c", HOFFSET(src_type_t, c), array_dt) < 0 ||
            H5Tinsert(st, "d", HOFFSET(src_type_t, d), H5T_NATIVE_INT) < 0 ||
            H5Tinsert(st, "e", HOFFSET(src_type_t, e), H5T_NATIVE_INT) < 0)
        goto error;

    if(H5Tclose(array_dt) < 0)
        goto error;

    array_dt = H5Tarray_create2(H5T_NATIVE_INT, 1, &four);
    if((dt = H5Tcreate(H5T_COMPOUND, sizeof(dst_type_t))) < 0 ||
            H5Tinsert(dt, "a", HOFFSET(dst_type_t, a), H5T_NATIVE_INT) < 0 ||
            H5Tinsert(dt, "c", HOFFSET(dst_type_t, c), array_dt) < 0 ||
            H5Tinsert(dt, "e", HOFFSET(dst_type_t, e), H5T_NATIVE_INT) < 0)
        goto error;

    if(H5Tclose(array_dt) < 0)
        goto error;

    /*
     * Create a new dataset within the file using cparms
     * creation properties.
     */
    if((dataset = H5Dcreate2(file, DATASETNAME4, st, dataspace, H5P_DEFAULT,
			cparms, H5P_DEFAULT)) < 0)
        goto error;

    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
        goto error;

    /* Initialize data for one chunk */
    for(i = n = 0; i < CHUNK_NX; i++) {
        for(j = 0; j < CHUNK_NY; j++) {
            (direct_buf[i][j]).a    = i*j+0;
            (direct_buf[i][j]).b    = i*j+1;
            (direct_buf[i][j]).c[0] = i*j+2;
            (direct_buf[i][j]).c[1] = i*j+3;
            (direct_buf[i][j]).c[2] = i*j+4;
            (direct_buf[i][j]).c[3] = i*j+5;
            (direct_buf[i][j]).d    = i*j+6;
            (direct_buf[i][j]).e    = i*j+7;
        }
    }

    /* write the chunk data to dataset, using the direct writing function. 
     * There should be no data conversion involved. */
    offset[0] = CHUNK_NX;
    offset[1] = CHUNK_NY;

    if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0)
        goto error;

    if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) 
        goto error;

    if(H5Dclose(dataset) < 0)
        goto error;

    if((dataset = H5Dopen2(file, DATASETNAME4, H5P_DEFAULT)) < 0)
        goto error;

    /*
     * Select hyperslab for the chunk just written in the file
     */
    start[0]  = CHUNK_NX; start[1]  = CHUNK_NY;
    stride[0] = 1; stride[1] = 1;
    count[0]  = 1; count[1]  = 1;
    block[0]  = CHUNK_NX; block[1]  = CHUNK_NY;
    if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
        goto error;

    /* Read the chunk back. Data should be converted */
    if((status = H5Dread(dataset, dt, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
        goto error;

    /* Check that the values read are the same as the values written */
    for(i = 0; i < CHUNK_NX; i++) {
        for(j = 0; j < CHUNK_NY; j++) {
	    if ((direct_buf[i][j]).a    != (check_chunk[i][j]).a    ||
	        (direct_buf[i][j]).c[0] != (check_chunk[i][j]).c[0] ||
	        (direct_buf[i][j]).c[1] != (check_chunk[i][j]).c[1] ||
	        (direct_buf[i][j]).c[2] != (check_chunk[i][j]).c[2] ||
	        (direct_buf[i][j]).c[3] != (check_chunk[i][j]).c[3] ||
	        (direct_buf[i][j]).e    != (check_chunk[i][j]).e) {
                printf("    1. Read different values than written.");
                printf("    At index %d,%d\n", i, j);
	        printf("    src={a=%d, b=%d, c=[%d,%d,%d,%d], d=%d, e=%d\n",
                   (direct_buf[i][j]).a, (direct_buf[i][j]).b, (direct_buf[i][j]).c[0], (direct_buf[i][j]).c[1], 
                   (direct_buf[i][j]).c[2], (direct_buf[i][j]).c[3], (direct_buf[i][j]).d, (direct_buf[i][j]).e);
	        printf("    dst={a=%d, c=[%d,%d,%d,%d], e=%d\n",
                   (check_chunk[i][j]).a, (check_chunk[i][j]).c[0], (check_chunk[i][j]).c[1], (check_chunk[i][j]).c[2], 
                   (check_chunk[i][j]).c[3], (check_chunk[i][j]).e);

	    goto error;
            }
        }
    }

    /*
     * Close/release resources.
     */
    H5Dclose(dataset);
    H5Sclose(mem_space);
    H5Sclose(dataspace);
    H5Pclose(cparms);
    H5Pclose(dxpl);
    H5Tclose(st);
    H5Tclose(dt);


    PASSED();
    return 0;

error:
    H5E_BEGIN_TRY {
        H5Dclose(dataset);
        H5Sclose(mem_space);
        H5Sclose(dataspace);
        H5Pclose(cparms);
        H5Pclose(dxpl);
        H5Tclose(st);
        H5Tclose(dt);
    } H5E_END_TRY;

    return 1;
}
Exemple #13
0
void
done()
{
  ASSERT(MANGLE(failures) == 0);
  PASSED();
}
Exemple #14
0
/*-------------------------------------------------------------------------
 * Function:    test_family_compat
 *
 * Purpose:     Tests the backward compatibility for FAMILY driver.
 *              See if we can open files created with v1.6 library.
 *              The source file was created by the test/file_handle.c
 *              of the v1.6 library.  Then tools/misc/h5repart.c was
 *              used to concantenated.  The command was "h5repart -m 5k
 *              family_file%05d.h5 family_v16_%05d.h5".
 *
 * Return:      Success:        0
 *              Failure:        -1
 *
 * Programmer:  Raymond Lu
 *              June 3, 2005
 *
 *-------------------------------------------------------------------------
 */
static herr_t
test_family_compat(void)
{
    hid_t       file = (-1), fapl;
    hid_t       dset;
    char        dname[]="dataset";
    char        filename[1024];
    char        pathname[1024], pathname_individual[1024];
    char        newname[1024], newname_individual[1024];
    FILE        *tmp_fp, *old_fp;       /* Pointers to temp & old files */
    int         counter = 0;

    TESTING("FAMILY file driver backward compatibility");

    /* Set property list and file name for FAMILY driver */
    fapl = h5_fileaccess();

    if(H5Pset_fapl_family(fapl, (hsize_t)FAMILY_SIZE2, H5P_DEFAULT) < 0)
        TEST_ERROR;

    h5_fixname(COMPAT_BASENAME, fapl, filename, sizeof filename);
    h5_fixname(FILENAME[3], fapl, newname, sizeof newname);

    pathname[0] = '\0';
    HDstrcat(pathname, filename);

    /* The following code makes the copies of the family files in the source directory.
     * Since we're going to open the files with write mode, this protects the original
     * files.
     */
    sprintf(newname_individual, newname, counter);
    sprintf(pathname_individual, pathname, counter);

    while (h5_make_local_copy(pathname_individual, newname_individual) >= 0) {
        counter++;
        sprintf(newname_individual, newname, counter);
        sprintf(pathname_individual, pathname, counter);
    }

    if ((NULL != (old_fp = HDfopen(pathname_individual,"rb"))) && 
        (NULL != (tmp_fp = HDfopen(newname_individual,"wb"))))
	TEST_ERROR;

    /* Make sure we can open the file.  Use the read and write mode to flush the
     * superblock. */
    if((file = H5Fopen(newname, H5F_ACC_RDWR, fapl)) < 0)
        TEST_ERROR;

    if((dset = H5Dopen2(file, dname, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    if(H5Dclose(dset) < 0)
        TEST_ERROR;

    if(H5Fclose(file) < 0)
        TEST_ERROR;

    /* Open the file again to make sure it isn't corrupted. */
    if((file = H5Fopen(newname, H5F_ACC_RDWR, fapl)) < 0)
        TEST_ERROR;

    if((dset = H5Dopen2(file, dname, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    if(H5Dclose(dset) < 0)
        TEST_ERROR;

    if(H5Fclose(file) < 0)
        TEST_ERROR;

    h5_cleanup(FILENAME, fapl);

    PASSED();

    return 0;

error:
    H5E_BEGIN_TRY {
        H5Fclose(file);
        H5Pclose(fapl); 
    } H5E_END_TRY;

    return -1;
} /* end test_family_compat() */
Exemple #15
0
/*-------------------------------------------------------------------------
 * Function:    test_core
 *
 * Purpose:     Tests the file handle interface for CORE driver
 *
 * Return:      Success:        0
 *              Failure:        -1
 *
 * Programmer:  Raymond Lu
 *              Tuesday, Sept 24, 2002
 *
 * Modifications:
 *
 *              Raymond Lu
 *              Wednesday, June 23, 2004
 *              Added test for H5Fget_filesize.
 *
 *              Raymond Lu, 2006-11-30
 *              Enabled the driver to read an existing file depending on
 *              the setting of the backing_store and file open flags.
 *-------------------------------------------------------------------------
 */
static herr_t
test_core(void)
{
    hid_t       file=(-1), fapl, access_fapl = -1;
    char        filename[1024];
    void        *fhandle=NULL;
    hsize_t     file_size;
    int		*points, *check, *p1, *p2;
    hid_t	dset1=-1, space1=-1;
    hsize_t	dims1[2];
    int		i, j, n;

    TESTING("CORE file driver");

    /* Set property list and file name for CORE driver */
    fapl = h5_fileaccess();
    if(H5Pset_fapl_core(fapl, (size_t)CORE_INCREMENT, TRUE) < 0)
        TEST_ERROR;
    h5_fixname(FILENAME[1], fapl, filename, sizeof filename);

    if((file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
        TEST_ERROR;

    /* Retrieve the access property list... */
    if ((access_fapl = H5Fget_access_plist(file)) < 0)
        TEST_ERROR;

    /* ...and close the property list */
    if (H5Pclose(access_fapl) < 0)
        TEST_ERROR;

    if(H5Fget_vfd_handle(file, H5P_DEFAULT, &fhandle) < 0)
        TEST_ERROR;
    if(fhandle==NULL)
    {
        printf("fhandle==NULL\n");
               TEST_ERROR;
    }

    /* Check file size API */
    if(H5Fget_filesize(file, &file_size) < 0)
        TEST_ERROR;

    /* There is no garantee the size of metadata in file is constant.
     * Just try to check if it's reasonable.  Why is this 4KB?
     */
    if(file_size<2*KB || file_size>6*KB)
        TEST_ERROR;

    if(H5Fclose(file) < 0)
        TEST_ERROR;


    /* Open the file with backing store off for read and write.
     * Changes won't be saved in file. */
    if(H5Pset_fapl_core(fapl, (size_t)CORE_INCREMENT, FALSE) < 0)
        TEST_ERROR;

    if((file=H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
        TEST_ERROR;

    /* Allocate memory for data set. */
    points=(int*)malloc(DSET1_DIM1*DSET1_DIM2*sizeof(int));
    check=(int*)malloc(DSET1_DIM1*DSET1_DIM2*sizeof(int));

    /* Initialize the dset1 */
    p1 = points;
    for(i = n = 0; i < DSET1_DIM1; i++)
	for(j = 0; j < DSET1_DIM2; j++)
	    *p1++ = n++;

    /* Create the data space1 */
    dims1[0] = DSET1_DIM1;
    dims1[1] = DSET1_DIM2;
    if((space1 = H5Screate_simple(2, dims1, NULL)) < 0)
        TEST_ERROR;

    /* Create the dset1 */
    if((dset1 = H5Dcreate2(file, DSET1_NAME, H5T_NATIVE_INT, space1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /* Write the data to the dset1 */
    if(H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0)
        TEST_ERROR;

    if(H5Dclose(dset1) < 0)
        TEST_ERROR;

    if((dset1 = H5Dopen2(file, DSET1_NAME, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /* Read the data back from dset1 */
    if(H5Dread(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0)
        TEST_ERROR;

    /* Check that the values read are the same as the values written */
    p1 = points;
    p2 = check;
    for(i = 0; i < DSET1_DIM1; i++)
	for(j = 0; j < DSET1_DIM2; j++)
	    if(*p1++ != *p2++) {
		H5_FAILED();
		printf("    Read different values than written in data set 1.\n");
		printf("    At index %d,%d\n", i, j);
        	TEST_ERROR;
	    } /* end if */

    if(H5Dclose(dset1) < 0)
        TEST_ERROR;

    if(H5Fclose(file) < 0)
        TEST_ERROR;

    /* Open the file with backing store on for read and write.
     * Changes will be saved in file. */
    if(H5Pset_fapl_core(fapl, (size_t)CORE_INCREMENT, TRUE) < 0)
        TEST_ERROR;

    if((file = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
        TEST_ERROR;

    /* Create the dset1 */
    if((dset1 = H5Dcreate2(file, DSET1_NAME, H5T_NATIVE_INT, space1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /* Write the data to the dset1 */
    if(H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0)
        TEST_ERROR;

    if(H5Dclose(dset1) < 0)
        TEST_ERROR;

    if((dset1 = H5Dopen2(file, DSET1_NAME, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /* Reallocate memory for reading buffer. */
    if(check)
	free(check);

    check = (int*)malloc(DSET1_DIM1 * DSET1_DIM2 * sizeof(int));

    /* Read the data back from dset1 */
    if(H5Dread(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0)
        TEST_ERROR;

    /* Check that the values read are the same as the values written */
    p1 = points;
    p2 = check;
    for(i = 0; i < DSET1_DIM1; i++)
	for(j = 0; j < DSET1_DIM2; j++)
	    if(*p1++ != *p2++) {
		H5_FAILED();
		printf("    Read different values than written in data set 1.\n");
		printf("    At index %d,%d\n", i, j);
        	TEST_ERROR;
	    } /* end if */

    /* Check file size API */
    if(H5Fget_filesize(file, &file_size) < 0)
        TEST_ERROR;

    /* There is no garantee the size of metadata in file is constant.
     * Just try to check if it's reasonable. */
    if(file_size<64*KB || file_size>256*KB)
        TEST_ERROR;

    if(H5Sclose(space1) < 0)
        TEST_ERROR;
    if(H5Dclose(dset1) < 0)
        TEST_ERROR;
    if(H5Fclose(file) < 0)
        TEST_ERROR;
    if(points)
	free(points);
    if(check)
	free(check);

    h5_cleanup(FILENAME, fapl);

    PASSED();
    return 0;

error:
    H5E_BEGIN_TRY {
        H5Pclose (fapl);
        H5Fclose(file);
    } H5E_END_TRY;
    return -1;
}
Exemple #16
0
/*-------------------------------------------------------------------------
 * Function:	test_allocate_random
 *
 * Purpose:	Tests allocating random sized blocks in pool
 *
 * Return:	Success:	0
 *
 *		Failure:	1
 *
 * Programmer:	Quincey Koziol
 *              Friday, May 6, 2005
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static int
test_allocate_random(void)
{
    H5MP_pool_t *mp;            /* Memory pool */
    size_t u;                   /* Local index variable */
    time_t curr_time;           /* Current time, for seeding random number generator */
    size_t *blk_size = NULL;    /* Pointer to block sizes */
    void **spc = NULL;          /* Pointer to space allocated */
    size_t swap_idx;            /* Location to swap with when shuffling */
    void *swap_ptr;             /* Pointer to swap when shuffling */

    /*
     * Test memory pool allocation
     */
    TESTING("allocate many random sized blocks");

    /* Initialize random number seed */
    curr_time=HDtime(NULL);
#ifdef QAK
curr_time=1115412944;
HDfprintf(stderr,"curr_time=%lu\n",(unsigned long)curr_time);
#endif /* QAK */
    HDsrandom((unsigned long)curr_time);

    /* Create a memory pool */
    if(NULL == (mp = H5MP_create((size_t)MPOOL_PAGE_SIZE, MPOOL_FLAGS)))
        TEST_ERROR

    /* Allocate space for the block sizes */
    if(NULL == (blk_size = HDmalloc(sizeof(size_t) * MPOOL_NUM_RANDOM)))
        TEST_ERROR

    /* Allocate space for the block pointers */
    if(NULL == (spc = HDmalloc(sizeof(void *) * MPOOL_NUM_RANDOM)))
        TEST_ERROR

    /* Initialize the block sizes with random values */
    for(u = 0; u < MPOOL_NUM_RANDOM; u++)
        blk_size[u] = (size_t)(HDrandom() % MPOOL_RANDOM_MAX_SIZE) + 1;

    /* Allocate space in pool */
    for(u = 0; u < MPOOL_NUM_RANDOM; u++)
        if(NULL == (spc[u] = H5MP_malloc(mp, blk_size[u])))
            TEST_ERROR

    /* Check that free space totals match */
    if(H5MP_pool_is_free_size_correct(mp) <= 0)
        TEST_ERROR;

    /* Shuffle pointers to free */
    for(u = 0; u < MPOOL_NUM_RANDOM; u++) {
        swap_idx = (size_t)(HDrandom() % (MPOOL_NUM_RANDOM - u)) + u;
        swap_ptr = spc[u];
        spc[u] = spc[swap_idx];
        spc[swap_idx] = swap_ptr;
    } /* end for */

    /* Free blocks in pool */
    for(u = 0; u < MPOOL_NUM_RANDOM; u++)
        H5MP_free(mp, spc[u]);

    /* Check that free space totals match */
    if (H5MP_pool_is_free_size_correct(mp) <= 0)
        TEST_ERROR;

    /* Initialize the block sizes with random values */
    for(u = 0; u < MPOOL_NUM_RANDOM; u++)
        blk_size[u] = (size_t)(HDrandom() % MPOOL_RANDOM_MAX_SIZE) + 1;

    /* Allocate space in pool (again) */
    /* (Leave allocated to test closing pool with many blocks still allocated) */
    for(u = 0; u < MPOOL_NUM_RANDOM; u++)
        if(NULL == (spc[u] = H5MP_malloc(mp, blk_size[u])))
            TEST_ERROR

    /* Check that free space totals match */
    if(H5MP_pool_is_free_size_correct(mp) <= 0)
        TEST_ERROR;

    /* Close the memory pool */
    if (H5MP_close(mp) < 0)
        TEST_ERROR

    /* Free memory for block sizes & pointers */
    HDfree(blk_size);
    HDfree(spc);

    PASSED();

    return 0;

error:
    if(blk_size)
        HDfree(blk_size);
    if(spc)
        HDfree(spc);
    H5E_BEGIN_TRY {
    } H5E_END_TRY;
    return 1;
} /* test_allocate_random() */
Exemple #17
0
/*-------------------------------------------------------------------------
 * Function:    test_direct
 *
 * Purpose:     Tests the file handle interface for DIRECT I/O driver
 *
 * Return:      Success:        0
 *              Failure:        -1
 *
 * Programmer:  Raymond Lu
 *              Wednesday, 20 September 2006
 *
 *-------------------------------------------------------------------------
 */
static herr_t
test_direct(void)
{
#ifdef H5_HAVE_DIRECT
    hid_t       file=(-1), fapl, access_fapl = -1;
    hid_t	dset1=-1, dset2=-1, space1=-1, space2=-1;
    char        filename[1024];
    int         *fhandle=NULL;
    hsize_t     file_size;
    hsize_t	dims1[2], dims2[1];
    size_t	mbound;
    size_t	fbsize;
    size_t	cbsize;
    int		*points, *check, *p1, *p2;
    int		wdata2[DSET2_DIM] = {11,12,13,14};
    int		rdata2[DSET2_DIM];
    int		i, j, n;
#endif /*H5_HAVE_DIRECT*/

    TESTING("Direct I/O file driver");

#ifndef H5_HAVE_DIRECT
    SKIPPED();
    return 0;
#else /*H5_HAVE_DIRECT*/

    /* Set property list and file name for Direct driver.  Set memory alignment boundary
     * and file block size to 512 which is the minimum for Linux 2.6. */
    fapl = h5_fileaccess();
    if(H5Pset_fapl_direct(fapl, MBOUNDARY, FBSIZE, CBSIZE) < 0)
        TEST_ERROR;
    h5_fixname(FILENAME[5], fapl, filename, sizeof filename);

    /* Verify the file access properties */
    if(H5Pget_fapl_direct(fapl, &mbound, &fbsize, &cbsize) < 0)
        TEST_ERROR;
    if(mbound != MBOUNDARY || fbsize != FBSIZE || cbsize != CBSIZE)
	TEST_ERROR;

    if(H5Pset_alignment(fapl, (hsize_t)THRESHOLD, (hsize_t)FBSIZE) < 0)
	TEST_ERROR;

    H5E_BEGIN_TRY {
        file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
    } H5E_END_TRY;
    if(file<0) {
        H5Pclose (fapl);
        SKIPPED();
        printf("	Probably the file system doesn't support Direct I/O\n");
        return 0;
    }

    /* Retrieve the access property list... */
    if ((access_fapl = H5Fget_access_plist(file)) < 0)
        TEST_ERROR;

    /* ...and close the property list */
    if (H5Pclose(access_fapl) < 0)
        TEST_ERROR;

    /* Check file handle API */
    if(H5Fget_vfd_handle(file, H5P_DEFAULT, (void **)&fhandle) < 0)
        TEST_ERROR;
    if(*fhandle<0)
        TEST_ERROR;

    /* Check file size API */
    if(H5Fget_filesize(file, &file_size) < 0)
        TEST_ERROR;

    /* There is no guarantee of the number of metadata allocations, but it's
     * 4 currently and the size of the file should be between 3 & 4 file buffer
     * sizes..
     */
    if(file_size < (FBSIZE * 3) || file_size >= (FBSIZE * 4))
        TEST_ERROR;

    /* Allocate aligned memory for data set 1. For data set 1, everything is aligned including
     * memory address, size of data, and file address. */
    if(posix_memalign(&points, (size_t)FBSIZE, (size_t)(DSET1_DIM1*DSET1_DIM2*sizeof(int)))!=0)
        TEST_ERROR;

    if(posix_memalign(&check, (size_t)FBSIZE, (size_t)(DSET1_DIM1*DSET1_DIM2*sizeof(int)))!=0)
        TEST_ERROR;

    /* Initialize the dset1 */
    p1 = points;
    for(i = n = 0; i < DSET1_DIM1; i++)
	for(j = 0; j < DSET1_DIM2; j++)
	    *p1++ = n++;

    /* Create the data space1 */
    dims1[0] = DSET1_DIM1;
    dims1[1] = DSET1_DIM2;
    if((space1 = H5Screate_simple(2, dims1, NULL)) < 0)
        TEST_ERROR;

    /* Create the dset1 */
    if((dset1 = H5Dcreate2(file, DSET1_NAME, H5T_NATIVE_INT, space1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /* Write the data to the dset1 */
    if(H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0)
        TEST_ERROR;

    if(H5Dclose(dset1) < 0)
        TEST_ERROR;

    if((dset1 = H5Dopen2(file, DSET1_NAME, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /* Read the data back from dset1 */
    if(H5Dread(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0)
        TEST_ERROR;

    /* Check that the values read are the same as the values written */
    p1 = points;
    p2 = check;
    for(i = 0; i < DSET1_DIM1; i++)
	for(j = 0; j < DSET1_DIM2; j++)
	    if(*p1++ != *p2++) {
		H5_FAILED();
		printf("    Read different values than written in data set 1.\n");
		printf("    At index %d,%d\n", i, j);
        	TEST_ERROR;
	    } /* end if */

    /* Create the data space2. For data set 2, memory address and data size are not aligned. */
    dims2[0] = DSET2_DIM;
    if((space2 = H5Screate_simple(1, dims2, NULL)) < 0)
        TEST_ERROR;

    /* Create the dset2 */
    if((dset2 = H5Dcreate2(file, DSET2_NAME, H5T_NATIVE_INT, space2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /* Write the data to the dset1 */
    if(H5Dwrite(dset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata2) < 0)
        TEST_ERROR;

    if(H5Dclose(dset2) < 0)
        TEST_ERROR;

    if((dset2 = H5Dopen2(file, DSET2_NAME, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /* Read the data back from dset1 */
    if(H5Dread(dset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata2) < 0)
        TEST_ERROR;

    /* Check that the values read are the same as the values written */
    for(i = 0; i < DSET2_DIM; i++)
	if(wdata2[i] != rdata2[i]) {
	    H5_FAILED();
	    printf("    Read different values than written in data set 2.\n");
	    printf("    At index %d\n", i);
            TEST_ERROR;
	} /* end if */

    if(H5Sclose(space1) < 0)
        TEST_ERROR;
    if(H5Dclose(dset1) < 0)
        TEST_ERROR;
    if(H5Sclose(space2) < 0)
        TEST_ERROR;
    if(H5Dclose(dset2) < 0)
        TEST_ERROR;
    if(H5Fclose(file) < 0)
        TEST_ERROR;
    if(points)
	free(points);
    if(check)
	free(check);

    h5_cleanup(FILENAME, fapl);
    PASSED();
    return 0;

error:
    H5E_BEGIN_TRY {
        H5Pclose (fapl);
        H5Sclose(space1);
        H5Dclose(dset1);
        H5Sclose(space2);
        H5Dclose(dset2);
        H5Fclose(file);
    } H5E_END_TRY;
    return -1;
#endif /*H5_HAVE_DIRECT*/
}
Exemple #18
0
/*-------------------------------------------------------------------------
 * Function:	test_tr2
 *
 * Purpose:	Tests conversions that use the O(log N) lookup function.
 *
 * Return:	Success:	0
 *
 *		Failure:	number of errors
 *
 * Programmer:	Robb Matzke
 *              Tuesday, January  5, 1999
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static int
test_tr2(hid_t file)
{
    hid_t	cwg=-1, m_type=-1, f_type=-1, space=-1, dset=-1;
    hsize_t	ds_size[1]={10};
    size_t	i;
    c_e1	val1;
    int		val2;
    static c_e1	data1[10]={E1_RED,   E1_GREEN, E1_BLUE,  E1_GREEN, E1_WHITE,
			   E1_WHITE, E1_BLACK, E1_GREEN, E1_BLUE,  E1_RED};
    c_e1	data2[10];

    TESTING("O(log N) converions");
    if ((cwg=H5Gcreate(file, "test_tr2", 0))<0) goto error;

    if ((m_type = H5Tcreate(H5T_ENUM, sizeof(c_e1)))<0) goto error;
    if (H5Tenum_insert(m_type, "RED",   CPTR(val1, E1_RED  ))<0) goto error;
    if (H5Tenum_insert(m_type, "GREEN", CPTR(val1, E1_GREEN))<0) goto error;
    if (H5Tenum_insert(m_type, "BLUE",  CPTR(val1, E1_BLUE ))<0) goto error;
    if (H5Tenum_insert(m_type, "WHITE", CPTR(val1, E1_WHITE))<0) goto error;
    if (H5Tenum_insert(m_type, "BLACK", CPTR(val1, E1_BLACK))<0) goto error;

    if ((f_type = H5Tcreate(H5T_ENUM, sizeof(int)))<0) goto error;
    if (H5Tenum_insert(f_type, "RED",   CPTR(val2, 1050))<0) goto error;
    if (H5Tenum_insert(f_type, "GREEN", CPTR(val2, 1040))<0) goto error;
    if (H5Tenum_insert(f_type, "BLUE",  CPTR(val2, 1030))<0) goto error;
    if (H5Tenum_insert(f_type, "WHITE", CPTR(val2, 1020))<0) goto error;
    if (H5Tenum_insert(f_type, "BLACK", CPTR(val2, 1010))<0) goto error;

    if ((space=H5Screate_simple(1, ds_size, NULL))<0) goto error;
    if ((dset=H5Dcreate(cwg, "color_table", f_type, space, H5P_DEFAULT))<0)
	goto error;
    if (H5Dwrite(dset, m_type, space, space, H5P_DEFAULT, data1)<0) goto error;
    if (H5Dread(dset, m_type, space, space, H5P_DEFAULT, data2)<0) goto error;

    for (i=0; i<ds_size[0]; i++) {
	if (data1[i]!=data2[i]) {
	    H5_FAILED();
	    printf("    data1[%lu]=%d, data2[%lu]=%d (should be same)\n",
		   (unsigned long)i, (int)(data1[i]),
		   (unsigned long)i, (int)(data2[i]));
	    goto error;
	}
    }

    if (H5Dclose(dset)<0) goto error;
    if (H5Sclose(space)<0) goto error;
    if (H5Tclose(m_type)<0) goto error;
    if (H5Tclose(f_type)<0) goto error;
    if (H5Gclose(cwg)<0) goto error;
    PASSED();
    return 0;

 error:
    H5E_BEGIN_TRY {
	H5Dclose(dset);
	H5Sclose(space);
	H5Tclose(m_type);
	H5Tclose(f_type);
	H5Gclose(cwg);
    } H5E_END_TRY;
    return 1;
}
Exemple #19
0
/*-------------------------------------------------------------------------
 * Function:    test_family
 *
 * Purpose:     Tests the file handle interface for FAMILY driver
 *
 * Return:      Success:        0
 *              Failure:        -1
 *
 * Programmer:  Raymond Lu
 *              Tuesday, Sept 24, 2002
 *
 * Modifications:
 *
 *              Raymond Lu
 *              Wednesday, June 23, 2004
 *              Added test for H5Fget_filesize.
 *
 *              Raymond Lu
 *              June 2, 2005
 *              Added a function test_family_opens() to test different
 *              wrong way to reopen family files.
 *
 *-------------------------------------------------------------------------
 */
static herr_t
test_family(void)
{
    hid_t       file=(-1), fapl, fapl2=(-1), space=(-1), dset=(-1);
    hid_t       access_fapl = -1;
    char        filename[1024];
    char        dname[]="dataset";
    unsigned int i, j;
    int         *fhandle=NULL, *fhandle2=NULL;
    int         buf[FAMILY_NUMBER][FAMILY_SIZE];
    hsize_t     dims[2]={FAMILY_NUMBER, FAMILY_SIZE};
    hsize_t     file_size;

    TESTING("FAMILY file driver");

    /* Set property list and file name for FAMILY driver */
    fapl = h5_fileaccess();

    if(H5Pset_fapl_family(fapl, (hsize_t)FAMILY_SIZE, H5P_DEFAULT) < 0)
        TEST_ERROR;
    h5_fixname(FILENAME[2], fapl, filename, sizeof filename);

    if((file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
        TEST_ERROR;

    if(H5Fclose(file) < 0)
        TEST_ERROR;

    /* Test different wrong ways to reopen family files where there's only
     * one member file existing. */
    if(test_family_opens(filename, fapl) < 0)
        TEST_ERROR;

    /* Reopen the file with default member file size */
    if(H5Pset_fapl_family(fapl, (hsize_t)H5F_FAMILY_DEFAULT, H5P_DEFAULT) < 0)
        TEST_ERROR;

    if((file=H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
        TEST_ERROR;

    /* Check file size API */
    if(H5Fget_filesize(file, &file_size) < 0)
        TEST_ERROR;

    /* The file size is supposed to be about 800 bytes right now. */
    if(file_size < (KB / 2) || file_size > KB)
        TEST_ERROR;

    /* Create and write dataset */
    if((space=H5Screate_simple(2, dims, NULL)) < 0)
        TEST_ERROR;

    /* Retrieve the access property list... */
    if ((access_fapl = H5Fget_access_plist(file)) < 0)
        TEST_ERROR;

    /* ...and close the property list */
    if (H5Pclose(access_fapl) < 0)
        TEST_ERROR;

    if((dset=H5Dcreate2(file, dname, H5T_NATIVE_INT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    for(i=0; i<FAMILY_NUMBER; i++)
        for(j=0; j<FAMILY_SIZE; j++)
            buf[i][j] = i*10000+j;

    if(H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
        TEST_ERROR;

    /* check file handle API */
    if((fapl2=H5Pcreate(H5P_FILE_ACCESS)) < 0)
        TEST_ERROR;
    if(H5Pset_family_offset(fapl2, (hsize_t)0) < 0)
        TEST_ERROR;

    if(H5Fget_vfd_handle(file, fapl2, (void **)&fhandle) < 0)
        TEST_ERROR;
    if(*fhandle<0)
        TEST_ERROR;

    if(H5Pset_family_offset(fapl2, (hsize_t)(FAMILY_SIZE*2)) < 0)
        TEST_ERROR;
    if(H5Fget_vfd_handle(file, fapl2, (void **)&fhandle2) < 0)
        TEST_ERROR;
    if(*fhandle2<0)
        TEST_ERROR;

    /* Check file size API */
    if(H5Fget_filesize(file, &file_size) < 0)
        TEST_ERROR;

    /* Some data has been written.  The file size should be bigger(18KB+976
     * bytes if int size is 4 bytes) now. */
    if(sizeof(int)<=4) {
        if(file_size<18*KB || file_size>20*KB)
            TEST_ERROR;
    } else if(sizeof(int)>=8) {
        if(file_size<32*KB || file_size>40*KB)
            TEST_ERROR;
    }

    if(H5Sclose(space) < 0)
        TEST_ERROR;
    if(H5Dclose(dset) < 0)
        TEST_ERROR;
    if(H5Pclose(fapl2) < 0)
        TEST_ERROR;
    if(H5Fclose(file) < 0)
        TEST_ERROR;

    /* Test different wrong ways to reopen family files when there're multiple
     * member files existing. */
    if(test_family_opens(filename, fapl) < 0)
        TEST_ERROR;

    /* Reopen the file with correct member file size. */
    if(H5Pset_fapl_family(fapl, (hsize_t)FAMILY_SIZE, H5P_DEFAULT) < 0)
        TEST_ERROR;

    if((file=H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
        TEST_ERROR;

    if(H5Fclose(file) < 0)
        TEST_ERROR;

    h5_cleanup(FILENAME, fapl);
    PASSED();
    return 0;

error:
    H5E_BEGIN_TRY {
        H5Sclose(space);
        H5Dclose(dset);
        H5Pclose (fapl2);
        H5Fclose(file);
    } H5E_END_TRY;
    return -1;
}
Exemple #20
0
static int read_data(char *fname)
{
    char        pathname[1024];
    char       *srcdir = getenv("srcdir"); /*where the src code is located*/
    hid_t       file, dataset;         /* handles */
    hid_t       datatype;
    hid_t	dt;
    double      data_in[NX][NY]; /* input buffer */
    double      data_out[NX][NY]; /* output buffer */
    int         i, j;
    unsigned 	nerrors = 0;

    pathname[0] = '\0';
    /* Generate correct name for test file by prepending the source path */
    if(srcdir && ((strlen(srcdir) + strlen(fname) + 1) < sizeof(pathname))) {
        strcpy(pathname, srcdir);
        strcat(pathname, "/");
    }
    strcat(pathname, fname);

    /*
     * Data and output buffer initialization.
     */
    for (j = 0; j < NX; j++) {
	for (i = 0; i < NY; i++) {
	    data_in[j][i] = i + j;
	    data_out[j][i] = 0;
        }
    }
    /*
     * 0 1 2 3 4 5
     * 1 2 3 4 5 6
     * 2 3 4 5 6 7
     * 3 4 5 6 7 8
     * 4 5 6 7 8 9
     */

    /*
     * Open the file and the dataset.
     */
    if((file = H5Fopen(pathname, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0)
        TEST_ERROR;
    if((dataset = H5Dopen2(file, DATASETNAME, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    /*
     * Get datatype and dataspace handles and then query
     * dataset class, order, size, rank and dimensions.
     */
    if((dt = H5Dget_type(dataset)) < 0)     /* datatype handle */
        TEST_ERROR;
    if((datatype = H5Tget_native_type(dt, H5T_DIR_DEFAULT)) < 0)
        TEST_ERROR;

    /*
     * Read data from hyperslab in the file into the hyperslab in
     * memory and display.
     */
    if(H5Dread(dataset, datatype, H5S_ALL, H5S_ALL, H5P_DEFAULT, data_out) < 0)
        TEST_ERROR;

    /* Check results */
    for (j=0; j<NX; j++) {
        for (i=0; i<NY; i++) {
            if (data_out[j][i] != data_in[j][i]) {
                if (!nerrors++) {
                    H5_FAILED();
                    printf("element [%d][%d] is %g but should have been %g\n",
                           j, i, data_out[j][i], data_in[j][i]);
                }
            }
        }
    }

    /*
     * Close/release resources.
     */
    H5Tclose(dt);
    H5Tclose(datatype);
    H5Dclose(dataset);
    H5Fclose(file);

    /* Failure */
    if (nerrors) {
        printf("total of %d errors out of %d elements\n", nerrors, NX*NY);
        return 1;
    }

    PASSED();
    return 0;

error:
    H5E_BEGIN_TRY {
        H5Fclose(file);
    } H5E_END_TRY;
    return 1;
}
Exemple #21
0
/*-------------------------------------------------------------------------
 * Function:    test_multi
 *
 * Purpose:     Tests the file handle interface for MUTLI driver
 *
 * Return:      Success:        0
 *              Failure:        -1
 *
 * Programmer:  Raymond Lu
 *              Tuesday, Sept 24, 2002
 *
 * Modifications:
 *
 *              Raymond Lu
 *              Wednesday, June 23, 2004
 *              Added test for H5Fget_filesize.
 *
 *-------------------------------------------------------------------------
 */
static herr_t
test_multi(void)
{
    hid_t       file=(-1), fapl, fapl2=(-1), dset=(-1), space=(-1);
    hid_t       root, attr, aspace, atype;
    hid_t       access_fapl = -1;
    char        filename[1024];
    int         *fhandle2=NULL, *fhandle=NULL;
    hsize_t     file_size;
    H5FD_mem_t  mt, memb_map[H5FD_MEM_NTYPES];
    hid_t       memb_fapl[H5FD_MEM_NTYPES];
    haddr_t     memb_addr[H5FD_MEM_NTYPES];
    const char  *memb_name[H5FD_MEM_NTYPES];
    char        sv[H5FD_MEM_NTYPES][32];
    hsize_t     dims[2]={MULTI_SIZE, MULTI_SIZE};
    hsize_t     adims[1]={1};
    char        dname[]="dataset";
    char        meta[] = "this is some metadata on this file";
    int         i, j;
    int         buf[MULTI_SIZE][MULTI_SIZE];

    TESTING("MULTI file driver");
    /* Set file access property list for MULTI driver */
    fapl = h5_fileaccess();

    HDmemset(memb_map, 0,  sizeof memb_map);
    HDmemset(memb_fapl, 0, sizeof memb_fapl);
    HDmemset(memb_name, 0, sizeof memb_name);
    HDmemset(memb_addr, 0, sizeof memb_addr);
    HDmemset(sv, 0, sizeof sv);

    for(mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t,mt)) {
        memb_fapl[mt] = H5P_DEFAULT;
        memb_map[mt] = H5FD_MEM_SUPER;
    }
    memb_map[H5FD_MEM_DRAW] = H5FD_MEM_DRAW;
    memb_map[H5FD_MEM_BTREE] = H5FD_MEM_BTREE;
    memb_map[H5FD_MEM_GHEAP] = H5FD_MEM_GHEAP;

    sprintf(sv[H5FD_MEM_SUPER], "%%s-%c.h5", 's');
    memb_name[H5FD_MEM_SUPER] = sv[H5FD_MEM_SUPER];
    memb_addr[H5FD_MEM_SUPER] = 0;

    sprintf(sv[H5FD_MEM_BTREE],  "%%s-%c.h5", 'b');
    memb_name[H5FD_MEM_BTREE] = sv[H5FD_MEM_BTREE];
    memb_addr[H5FD_MEM_BTREE] = HADDR_MAX/4;

    sprintf(sv[H5FD_MEM_DRAW], "%%s-%c.h5", 'r');
    memb_name[H5FD_MEM_DRAW] = sv[H5FD_MEM_DRAW];
    memb_addr[H5FD_MEM_DRAW] = HADDR_MAX/2;

    sprintf(sv[H5FD_MEM_GHEAP], "%%s-%c.h5", 'g');
    memb_name[H5FD_MEM_GHEAP] = sv[H5FD_MEM_GHEAP];
    memb_addr[H5FD_MEM_GHEAP] = HADDR_MAX*3/4;


    if(H5Pset_fapl_multi(fapl, memb_map, memb_fapl, memb_name, memb_addr, TRUE) < 0)
        TEST_ERROR;
    h5_fixname(FILENAME[4], fapl, filename, sizeof filename);

    if((file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
        TEST_ERROR;

    if(H5Fclose(file) < 0)
        TEST_ERROR;


    /* Test wrong ways to reopen multi files */
    if(test_multi_opens(filename) < 0)
        TEST_ERROR;

    /* Reopen the file */
    if((file=H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
        TEST_ERROR;

    /* Create and write data set */
    if((space=H5Screate_simple(2, dims, NULL)) < 0)
        TEST_ERROR;

    /* Retrieve the access property list... */
    if ((access_fapl = H5Fget_access_plist(file)) < 0)
        TEST_ERROR;

    /* ...and close the property list */
    if (H5Pclose(access_fapl) < 0)
        TEST_ERROR;

    /* Check file size API */
    if(H5Fget_filesize(file, &file_size) < 0)
        TEST_ERROR;

    /* Before any data is written, the raw data file is empty.  So
     * the file size is only the size of b-tree + HADDR_MAX/4.
     */
    if(file_size < HADDR_MAX/4 || file_size > HADDR_MAX/2)
        TEST_ERROR;

    if((dset=H5Dcreate2(file, dname, H5T_NATIVE_INT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    for(i=0; i<MULTI_SIZE; i++)
        for(j=0; j<MULTI_SIZE; j++)
            buf[i][j] = i*10000+j;
    if(H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
        TEST_ERROR;

    if((fapl2=H5Pcreate(H5P_FILE_ACCESS)) < 0)
        TEST_ERROR;
    if(H5Pset_multi_type(fapl2, H5FD_MEM_SUPER) < 0)
        TEST_ERROR;
    if(H5Fget_vfd_handle(file, fapl2, (void **)&fhandle) < 0)
        TEST_ERROR;
    if(*fhandle<0)
        TEST_ERROR;

    if(H5Pset_multi_type(fapl2, H5FD_MEM_DRAW) < 0)
        TEST_ERROR;
    if(H5Fget_vfd_handle(file, fapl2, (void **)&fhandle2) < 0)
        TEST_ERROR;
    if(*fhandle2<0)
        TEST_ERROR;

    /* Check file size API */
    if(H5Fget_filesize(file, &file_size) < 0)
        TEST_ERROR;

    /* After the data is written, the file size is huge because the
     * beginning of raw data file is set at HADDR_MAX/2.  It's supposed
     * to be (HADDR_MAX/2 + 128*128*4)
     */
    if(file_size < HADDR_MAX/2 || file_size > HADDR_MAX)
        TEST_ERROR;

    if(H5Sclose(space) < 0)
        TEST_ERROR;
    if(H5Dclose(dset) < 0)
        TEST_ERROR;
    if(H5Pclose(fapl2) < 0)
        TEST_ERROR;

    /* Create and write attribute for the root group. */
    if((root = H5Gopen2(file, "/", H5P_DEFAULT)) < 0)
        FAIL_STACK_ERROR

    /* Attribute string. */
    if((atype = H5Tcopy(H5T_C_S1)) < 0)
        TEST_ERROR;

    if(H5Tset_size(atype, strlen(meta) + 1) < 0)
        TEST_ERROR;

    if(H5Tset_strpad(atype, H5T_STR_NULLTERM) < 0)
        TEST_ERROR;

    /* Create and write attribute */
    if((aspace = H5Screate_simple(1, adims, NULL)) < 0)
        TEST_ERROR;

    if((attr = H5Acreate2(root, "Metadata", atype, aspace, H5P_DEFAULT, H5P_DEFAULT)) < 0)
        TEST_ERROR;

    if(H5Awrite(attr, atype, meta) < 0)
        TEST_ERROR;

    /* Close IDs */
    if(H5Tclose(atype) < 0)
        TEST_ERROR;
    if(H5Sclose(aspace) < 0)
        TEST_ERROR;
    if(H5Aclose(attr) < 0)
        TEST_ERROR;

    if(H5Fclose(file) < 0)
        TEST_ERROR;

    h5_cleanup(FILENAME, fapl);
    PASSED();

    return 0;

error:
    H5E_BEGIN_TRY {
        H5Sclose(space);
        H5Dclose(dset);
        H5Pclose(fapl);
        H5Pclose(fapl2);
        H5Fclose(file);
    } H5E_END_TRY;
    return -1;
}
Exemple #22
0
/*-------------------------------------------------------------------------
 * Function:    main
 *
 * Purpose:    Part 1 of a two-part H5Fflush() test.
 *
 * Return:    Success:    0
 *
 *        Failure:    1
 *
 * Programmer:    Robb Matzke
 *              Friday, October 23, 1998
 *
 * Modifications:
 *         Leon Arber
 *         Sept. 26, 2006, expand test to check for failure if H5Fflush is not called.
 *
 *
 *-------------------------------------------------------------------------
 */
int
main(int argc, char* argv[])
{
    hid_t file1, file2, fapl;
    MPI_File    *mpifh_p = NULL;
    char    name[1024];
    const char  *envval = NULL;
    int mpi_size, mpi_rank;
    MPI_Comm comm  = MPI_COMM_WORLD;
    MPI_Info info  = MPI_INFO_NULL;

    MPI_Init(&argc, &argv);
    MPI_Comm_size(comm, &mpi_size);
    MPI_Comm_rank(comm, &mpi_rank);

    fapl = H5Pcreate(H5P_FILE_ACCESS);
    H5Pset_fapl_mpio(fapl, comm, info);

    if(mpi_rank == 0)
    TESTING("H5Fflush (part1)");
    envval = HDgetenv("HDF5_DRIVER");
    if(envval == NULL)
        envval = "nomatch";
    if(HDstrcmp(envval, "split")) {
    /* Create the file */
    h5_fixname(FILENAME[0], fapl, name, sizeof name);
    file1 = create_file(name, fapl);
    /* Flush and exit without closing the library */
    if(H5Fflush(file1, H5F_SCOPE_GLOBAL) < 0) goto error;

    /* Create the other file which will not be flushed */
    h5_fixname(FILENAME[1], fapl, name, sizeof name);
    file2 = create_file(name, fapl);


    if(mpi_rank == 0)
        PASSED();
    fflush(stdout);
    fflush(stderr);
    } /* end if */
    else {
        SKIPPED();
        puts("    Test not compatible with current Virtual File Driver");
    } /* end else */

    /*
     * Some systems like AIX do not like files not closed when MPI_Finalize
     * is called.  So, we need to get the MPI file handles, close them by hand.
     * Then the _exit is still needed to stop at_exit from happening in some systems.
     * Note that MPIO VFD returns the address of the file-handle in the VFD struct
     * because MPI_File_close wants to modify the file-handle variable.
     */

    /* close file1 */
    if(H5Fget_vfd_handle(file1, fapl, (void **)&mpifh_p) < 0) {
    printf("H5Fget_vfd_handle for file1 failed\n");
    goto error;
    } /* end if */
    if(MPI_File_close(mpifh_p) != MPI_SUCCESS) {
    printf("MPI_File_close for file1 failed\n");
    goto error;
    } /* end if */
    /* close file2 */
    if(H5Fget_vfd_handle(file2, fapl, (void **)&mpifh_p) < 0) {
    printf("H5Fget_vfd_handle for file2 failed\n");
    goto error;
    } /* end if */
    if(MPI_File_close(mpifh_p) != MPI_SUCCESS) {
    printf("MPI_File_close for file2 failed\n");
    goto error;
    } /* end if */

    fflush(stdout);
    fflush(stderr);
    HD_exit(0);

error:
    fflush(stdout);
    fflush(stderr);
    HD_exit(1);
}
Exemple #23
0
/*-------------------------------------------------------------------------
 * Function:	test_skip_compress_write2
 *
 * Purpose:	Test skipping compression filter when there are three filters
 *              for the dataset
 *
 * Return:	Success:	0
 *
 *		Failure:	1
 *
 * Programmer:  Raymond Lu	
 *              30 November 2012
 *
 *-------------------------------------------------------------------------
 */
static int
test_skip_compress_write2(hid_t file)
{
    hid_t       dataspace = -1, dataset = -1;
    hid_t       mem_space = -1;
    hid_t       cparms = -1, dxpl = -1;
    hsize_t     dims[2]  = {NX, NY};        
    hsize_t     maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
    hsize_t     chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
    herr_t      status;
    int         i, j, n;

    unsigned    filter_mask = 0;
    int         origin_direct_buf[CHUNK_NX][CHUNK_NY];
    int         direct_buf[CHUNK_NX][CHUNK_NY];
    int         check_chunk[CHUNK_NX][CHUNK_NY];
    hsize_t     offset[2] = {0, 0};
    size_t      buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
    int          aggression = 9;     /* Compression aggression setting */

    hsize_t start[2];  /* Start of hyperslab */
    hsize_t stride[2]; /* Stride of hyperslab */
    hsize_t count[2];  /* Block count */
    hsize_t block[2];  /* Block sizes */

    TESTING("skipping compression filters but keep two other filters");

    /*
     * Create the data space with unlimited dimensions.
     */
    if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
        goto error;

    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
        goto error;

    /*
     * Modify dataset creation properties, i.e. enable chunking and compression.
     * The order of filters is bogus 1 + deflate + bogus 2.
     */
    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
        goto error;

    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
        goto error;

    /* Register and enable first bogus filter */
    if(H5Zregister (H5Z_BOGUS1) < 0) 
	goto error;

    if(H5Pset_filter(cparms, H5Z_FILTER_BOGUS1, 0, (size_t)0, NULL) < 0) 
	goto error;

    /* Enable compression filter */
    if((status = H5Pset_deflate( cparms, (unsigned) aggression)) < 0)
        goto error;

    /* Register and enable second bogus filter */
    if(H5Zregister (H5Z_BOGUS2) < 0) 
	goto error;

    if(H5Pset_filter(cparms, H5Z_FILTER_BOGUS2, 0, (size_t)0, NULL) < 0) 
	goto error;

    /*
     * Create a new dataset within the file using cparms
     * creation properties.
     */
    if((dataset = H5Dcreate2(file, DATASETNAME3, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
			cparms, H5P_DEFAULT)) < 0)
        goto error;

    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
        goto error;

    /* Initialize data for one chunk. Apply operations of two bogus filters to the chunk */
    for(i = n = 0; i < CHUNK_NX; i++)
        for(j = 0; j < CHUNK_NY; j++) {
	    origin_direct_buf[i][j] = n++;
	    direct_buf[i][j] = (origin_direct_buf[i][j] + ADD_ON) * FACTOR;
    }

    /* write the uncompressed chunk data repeatedly to dataset, using the direct writing function. 
     * Indicate skipping the compression filter but keep the other two bogus filters */ 
    offset[0] = CHUNK_NX;
    offset[1] = CHUNK_NY;

    /* compression filter is the middle one to be skipped */
    filter_mask = 0x00000002;

    if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0)
        goto error;

    if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) 
        goto error;

    if(H5Dclose(dataset) < 0)
        goto error;

    if((dataset = H5Dopen2(file, DATASETNAME3, H5P_DEFAULT)) < 0)
        goto error;

    /*
     * Select hyperslab for one chunk in the file
     */
    start[0]  = CHUNK_NX; start[1]  = CHUNK_NY;
    stride[0] = 1; stride[1] = 1;
    count[0]  = 1; count[1]  = 1;
    block[0]  = CHUNK_NX; block[1]  = CHUNK_NY;
    if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
        goto error;

    /* Read the chunk back */
    if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
        goto error;

    /* Check that the values read are the same as the values written */
    for(i = 0; i < CHUNK_NX; i++) {
        for(j = 0; j < CHUNK_NY; j++) {
            if(origin_direct_buf[i][j] != check_chunk[i][j]) {
                printf("    1. Read different values than written.");
                printf("    At index %d,%d\n", i, j);
                printf("    origin_direct_buf=%d, check_chunk=%d\n", origin_direct_buf[i][j], check_chunk[i][j]); 
                goto error;
            }
        }
    }

    /*
     * Close/release resources.
     */
    H5Dclose(dataset);
    H5Sclose(mem_space);
    H5Sclose(dataspace);
    H5Pclose(cparms);
    H5Pclose(dxpl);
    
    PASSED();
    return 0;

error:
    H5E_BEGIN_TRY {
        H5Dclose(dataset);
        H5Sclose(mem_space);
        H5Sclose(dataspace);
        H5Pclose(cparms);
        H5Pclose(dxpl);
    } H5E_END_TRY;

    return 1;
}
Exemple #24
0
/*-------------------------------------------------------------------------
 * Function:    new_links
 *
 * Purpose:     Build a file with assorted links for different locations.
 *
 * Return:      Success:        0
 *
 *              Failure:        -1
 *
 * Programmer:  Raymond Lu
 *              Friday, April 19, 2002
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static int
new_links(hid_t fapl)
{
    hid_t		file_a, file_b=(-1);
    hid_t		grp1_a=(-1), grp1_b=(-1), grp2_a=(-1), grp2_b=(-1);
    hid_t		scalar=(-1);
    hid_t		dset1=(-1), dset2=(-1);
    char		filename[NAME_BUF_SIZE];
    hsize_t             size[1] = {1};

    TESTING("H5Glink2 function");

    /* Create two files */
    h5_fixname(FILENAME[1], fapl, filename, sizeof filename);
    if ((file_a=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl))<0) {
        goto error;
    }
    h5_fixname(FILENAME[2], fapl, filename, sizeof filename);
    if ((file_b=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl))<0) {
        goto error;
    }
    if ((scalar=H5Screate_simple (1, size, size))<0) goto error;

    /* Create two groups in each file */
    if ((grp1_a=H5Gcreate (file_a, "grp1", (size_t)0))<0) goto error;
    if ((grp2_a=H5Gcreate (file_a, "grp2", (size_t)0))<0) goto error;
    if ((grp1_b=H5Gcreate (file_b, "grp1", (size_t)0))<0) goto error;
    if ((grp2_b=H5Gcreate (file_b, "grp2", (size_t)0))<0) goto error;

    /* Create datasets */
    if((dset1=H5Dcreate(file_a, "dataset1", H5T_NATIVE_INT, scalar,
	H5P_DEFAULT))<0) {
	goto error;
    }
    if((dset2=H5Dcreate(grp1_a, "dataset2", H5T_NATIVE_INT, scalar,
        H5P_DEFAULT))<0) {
        goto error;
    }

    /* Create links within a file.  Both of source and destination use
     * H5G_SAME_LOC.  Both hard and soft links should fail. */
    H5E_BEGIN_TRY {
        if(H5Glink2(H5G_SAME_LOC, "dataset1", H5G_LINK_HARD , H5G_SAME_LOC,
		"hard")!=FAIL) goto error;
    } H5E_END_TRY;
    H5E_BEGIN_TRY {
        if(H5Glink2(H5G_SAME_LOC, "dataset1", H5G_LINK_SOFT , H5G_SAME_LOC,
        	"soft")!=FAIL) goto error;
    } H5E_END_TRY;

    /* Create links across files.  Both hard and soft links should fail. */
    H5E_BEGIN_TRY {
        if(H5Glink2(file_a, "dataset1", H5G_LINK_HARD , file_b,
        	"hard")!=FAIL) goto error;
    } H5E_END_TRY;
    H5E_BEGIN_TRY {
        if(H5Glink2(file_a, "dataset1", H5G_LINK_SOFT, file_b, "soft")!=FAIL)
            goto error;
    } H5E_END_TRY;

    /* Create links to test H5G_SAME_LOC, H5G_LINK_HARD, H5G_LINK_SOFT. */
    if(H5Glink2(grp1_a, "dataset2", H5G_LINK_HARD , H5G_SAME_LOC,
        "hard1")<0) {
        goto error;
    }
    if(H5Glink2(H5G_SAME_LOC, "dataset2", H5G_LINK_SOFT , grp1_a,
	"soft1")<0) {
        goto error;
    }

    /* Create links to test H5G_LINK_HARD, H5G_LINK_SOFT across different
     * locations. */
    if(H5Glink2(grp1_a, "dataset2", H5G_LINK_HARD, grp2_a, "hard2")<0) {
        goto error;
    }
    if(H5Glink2(grp1_a, "/grp1/dataset2", H5G_LINK_SOFT , grp2_a, "soft2")<0) {
        goto error;
    }

    /* Close dataspace and files */
    if (H5Sclose (scalar)<0) goto error;
    if (H5Dclose(dset1)<0) goto error;
    if (H5Dclose(dset2)<0) goto error;
    if (H5Gclose (grp1_a)<0) goto error;
    if (H5Gclose (grp2_a)<0) goto error;
    if (H5Gclose (grp1_b)<0) goto error;
    if (H5Gclose (grp2_b)<0) goto error;
    if (H5Fclose (file_a)<0) goto error;
    if (H5Fclose (file_b)<0) goto error;

    PASSED();
    return 0;

 error:
    H5E_BEGIN_TRY {
    	H5Sclose (scalar);
    	H5Dclose (dset1);
    	H5Dclose (dset2);
    	H5Gclose (grp1_a);
    	H5Gclose (grp2_a);
    	H5Gclose (grp1_b);
    	H5Gclose (grp2_b);
    	H5Fclose (file_a);
    	H5Fclose (file_b);
    } H5E_END_TRY;
    return -1;
}
Exemple #25
0
static int
test_direct_chunk_write (hid_t file)
{
    hid_t       dataspace = -1, dataset = -1;
    hid_t       mem_space = -1;
    hid_t       cparms = -1, dxpl = -1;
    hsize_t     dims[2]  = {NX, NY};        
    hsize_t     maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
    hsize_t     chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
    herr_t      status;
    int         ret;
    int         data[NX][NY];
    int         i, j, n;

    unsigned    filter_mask = 0;
    int         direct_buf[CHUNK_NX][CHUNK_NY];
    int         check_chunk[CHUNK_NX][CHUNK_NY];
    hsize_t     offset[2] = {0, 0};
    size_t      buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);

    const Bytef *z_src = (const Bytef*)(direct_buf);
    Bytef	    *z_dst;		/*destination buffer		*/
    uLongf	     z_dst_nbytes = (uLongf)DEFLATE_SIZE_ADJUST(buf_size);
    uLong	     z_src_nbytes = (uLong)buf_size;
    int          aggression = 9;     /* Compression aggression setting */
    void	*outbuf = NULL;         /* Pointer to new buffer */

    hsize_t start[2];  /* Start of hyperslab */
    hsize_t stride[2]; /* Stride of hyperslab */
    hsize_t count[2];  /* Block count */
    hsize_t block[2];  /* Block sizes */

    TESTING("basic functionality of H5DOwrite_chunk");

    /*
     * Create the data space with unlimited dimensions.
     */
    if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
        goto error;

    if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
        goto error;

    /*
     * Modify dataset creation properties, i.e. enable chunking and compression
     */
    if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
        goto error;

    if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
        goto error;

    if((status = H5Pset_deflate( cparms, (unsigned) aggression)) < 0)
        goto error;

    /*
     * Create a new dataset within the file using cparms
     * creation properties.
     */
    if((dataset = H5Dcreate2(file, DATASETNAME1, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
			cparms, H5P_DEFAULT)) < 0)
        goto error;

    /* Initialize the dataset */
    for(i = n = 0; i < NX; i++)
        for(j = 0; j < NY; j++)
	    data[i][j] = n++;

    if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
        goto error;

    /*
     * Write the data for the dataset.  It should stay in the chunk cache.
     * It will be evicted from the cache by the H5DOwrite_chunk calls. 
     */
    if((status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
		      dxpl, data)) < 0)
        goto error;

    /* Initialize data for one chunk */
    for(i = n = 0; i < CHUNK_NX; i++)
        for(j = 0; j < CHUNK_NY; j++)
	    direct_buf[i][j] = n++;

    /* Allocate output (compressed) buffer */
    outbuf = HDmalloc(z_dst_nbytes);
    z_dst = (Bytef *)outbuf;

    /* Perform compression from the source to the destination buffer */
    ret = compress2(z_dst, &z_dst_nbytes, z_src, z_src_nbytes, aggression);

    /* Check for various zlib errors */
    if(Z_BUF_ERROR == ret) {
        fprintf(stderr, "overflow");
        goto error;
    } else if(Z_MEM_ERROR == ret) {
	fprintf(stderr, "deflate memory error");
        goto error;
    } else if(Z_OK != ret) {
	fprintf(stderr, "other deflate error");
        goto error;
    }

    /* Write the compressed chunk data repeatedly to cover all the chunks in the 
     * dataset, using the direct writing function.     */ 
    for(i=0; i<NX/CHUNK_NX; i++) {
        for(j=0; j<NY/CHUNK_NY; j++) {
            status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, z_dst_nbytes, outbuf);
            offset[1] += CHUNK_NY;
        }
        offset[0] += CHUNK_NX;
        offset[1] = 0;
    }

    if(outbuf)
        HDfree(outbuf);

    if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) 
        goto error;

    if(H5Dclose(dataset) < 0)
        goto error;

    if((dataset = H5Dopen2(file, DATASETNAME1, H5P_DEFAULT)) < 0)
        goto error;

    /*
     * Select hyperslab for one chunk in the file
     */
    start[0]  = CHUNK_NX; start[1]  = CHUNK_NY;
    stride[0] = 1; stride[1] = 1;
    count[0]  = 1; count[1]  = 1;
    block[0]  = CHUNK_NX; block[1]  = CHUNK_NY;
    if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
        goto error;

    /* Read the chunk back */
    if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
        goto error;

    /* Check that the values read are the same as the values written */
    for(i = 0; i < CHUNK_NX; i++) {
        for(j = 0; j < CHUNK_NY; j++) {
            if(direct_buf[i][j] != check_chunk[i][j]) {
                printf("    1. Read different values than written.");
                printf("    At index %d,%d\n", i, j);
                printf("    direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]); 
                goto error;
            }
        }
    }

    /* Reinitialize different data for one chunk */
    for(i = 0; i < CHUNK_NX; i++)
        for(j = 0; j < CHUNK_NY; j++)
	    direct_buf[i][j] = i + j;

    /* Allocate output (compressed) buffer */
    outbuf = HDmalloc(z_dst_nbytes);
    z_dst = (Bytef *)outbuf;

    /* Perform compression from the source to the destination buffer */
    ret = compress2(z_dst, &z_dst_nbytes, z_src, z_src_nbytes, aggression);

    /* Check for various zlib errors */
    if(Z_BUF_ERROR == ret) {
        fprintf(stderr, "overflow");
        goto error;
    } else if(Z_MEM_ERROR == ret) {
	fprintf(stderr, "deflate memory error");
        goto error;
    } else if(Z_OK != ret) {
	fprintf(stderr, "other deflate error");
        goto error;
    }

    /* Rewrite the compressed chunk data repeatedly to cover all the chunks in the 
     * dataset, using the direct writing function.     */ 
    offset[0] = offset[1] = 0;
    for(i=0; i<NX/CHUNK_NX; i++) {
        for(j=0; j<NY/CHUNK_NY; j++) {
            status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, z_dst_nbytes, outbuf);
            offset[1] += CHUNK_NY;
        }
        offset[0] += CHUNK_NX;
        offset[1] = 0;
    }

    if(outbuf)
        HDfree(outbuf);

    if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) 
        goto error;

    if(H5Dclose(dataset) < 0)
        goto error;

    if((dataset = H5Dopen2(file, DATASETNAME1, H5P_DEFAULT)) < 0)
        goto error;

    /* Read the chunk back */
    if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
        goto error;

    /* Check that the values read are the same as the values written */
    for(i = 0; i < CHUNK_NX; i++) {
        for(j = 0; j < CHUNK_NY; j++) {
            if(direct_buf[i][j] != check_chunk[i][j]) {
                printf("    2. Read different values than written.");
                printf("    At index %d,%d\n", i, j);
                printf("    direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]); 
                goto error;
            }
        }
    }

    /*
     * Close/release resources.
     */
    H5Dclose(dataset);
    H5Sclose(mem_space);
    H5Sclose(dataspace);
    H5Pclose(cparms);
    H5Pclose(dxpl);
    
    PASSED();
    return 0;

error:
    H5E_BEGIN_TRY {
        H5Dclose(dataset);
        H5Sclose(mem_space);
        H5Sclose(dataspace);
        H5Pclose(cparms);
        H5Pclose(dxpl);
    } H5E_END_TRY;

    if(outbuf)
        HDfree(outbuf);

    return 1;
}
Exemple #26
0
/*-------------------------------------------------------------------------
 * Function:	cklinks
 *
 * Purpose:	Open the file created in the first step and check that the
 *		links look correct.
 *
 * Return:	Success:	0
 *
 *		Failure:	-1
 *
 * Programmer:	Robb Matzke
 *              Friday, August 14, 1998
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static int
cklinks(hid_t fapl)
{
    hid_t		file;
    H5G_stat_t		sb1, sb2;
    char		linkval[LINK_BUF_SIZE];
    char		filename[NAME_BUF_SIZE];
    herr_t		status;

    TESTING("link queries");

    /* Open the file */
    h5_fixname(FILENAME[0], fapl, filename, sizeof filename);
    if ((file=H5Fopen(filename, H5F_ACC_RDONLY, fapl))<0) {
	goto error;
    }

    /* Hard link */
    if (H5Gget_objinfo(file, "d1", TRUE, &sb1)<0) goto error;
    if (H5Gget_objinfo(file, "grp1/hard", TRUE, &sb2)<0) goto error;
    if (H5G_DATASET!=sb2.type) {
	H5_FAILED();
	puts("    Unexpected object type should have been a dataset");
	goto error;
    }
    if (sb1.objno[0]!=sb2.objno[0] || sb1.objno[1]!=sb2.objno[1]) {
	H5_FAILED();
	puts("    Hard link test failed. Link seems not to point to the ");
	puts("    expected file location.");
	goto error;
    }

    /* Symbolic link */
    if (H5Gget_objinfo(file, "grp1/soft", TRUE, &sb2)<0) goto error;
    if (H5G_DATASET!=sb2.type) {
	H5_FAILED();
	puts("    Unexpected object type should have been a dataset");
	goto error;
    }
    if (sb1.objno[0]!=sb2.objno[0] || sb1.objno[1]!=sb2.objno[1]) {
	H5_FAILED();
	puts("    Soft link test failed. Link seems not to point to the ");
	puts("    expected file location.");
	goto error;
    }
    if (H5Gget_linkval(file, "grp1/soft", sizeof linkval, linkval)<0) {
	goto error;
    }
    if (HDstrcmp(linkval, "/d1")) {
	H5_FAILED();
	puts("    Soft link test failed. Wrong link value");
	goto error;
    }

    /* Dangling link */
    H5E_BEGIN_TRY {
	status = H5Gget_objinfo(file, "grp1/dangle", TRUE, &sb2);
    } H5E_END_TRY;
    if (status>=0) {
	H5_FAILED();
	puts("    H5Gget_objinfo() should have failed for a dangling link.");
	goto error;
    }
    if (H5Gget_objinfo(file, "grp1/dangle", FALSE, &sb2)<0) goto error;
    if (H5G_LINK!=sb2.type) {
	H5_FAILED();
	puts("    Unexpected object type should have been a symbolic link");
	goto error;
    }
    if (H5Gget_linkval(file, "grp1/dangle", sizeof linkval, linkval)<0) {
	goto error;
    }
    if (HDstrcmp(linkval, "foobar")) {
	H5_FAILED();
	puts("    Dangling link test failed. Wrong link value");
	goto error;
    }

    /* Recursive link */
    H5E_BEGIN_TRY {
	status = H5Gget_objinfo(file, "grp1/recursive", TRUE, &sb2);
    } H5E_END_TRY;
    if (status>=0) {
	H5_FAILED();
	puts("    H5Gget_objinfo() should have failed for a recursive link.");
	goto error;
    }
    if (H5Gget_objinfo(file, "grp1/recursive", FALSE, &sb2)<0) goto error;
    if (H5G_LINK!=sb2.type) {
	H5_FAILED();
	puts("    Unexpected object type should have been a symbolic link");
	goto error;
    }
    if (H5Gget_linkval(file, "grp1/recursive", sizeof linkval, linkval)<0) {
	goto error;
    }
    if (HDstrcmp(linkval, "/grp1/recursive")) {
	H5_FAILED();
	puts("   Recursive link test failed. Wrong link value");
	goto error;
    }

    /* Cleanup */
    if (H5Fclose(file)<0) goto error;
    PASSED();
    return 0;

 error:
    return -1;
}
Exemple #27
0
/*
 *  Verify that object headers are held in the cache until they are linked
 *      to a location in the graph, or assigned an ID.  This is done by
 *      creating an object header, then forcing it out of the cache by creating
 *      local heaps until the object header is evicted from the cache, then
 *      modifying the object header.  The refcount on the object header is
 *      checked as verifying that the object header has remained in the cache.
 */
static herr_t
test_ohdr_cache(char *filename, hid_t fapl)
{
    hid_t	file = -1;              /* File ID */
    hid_t       my_fapl;                /* FAPL ID */
    hid_t       my_dxpl;                /* DXPL ID */
    H5AC_cache_config_t mdc_config;     /* Metadata cache configuration info */
    H5F_t	*f = NULL;              /* File handle */
    H5HL_t      *lheap, *lheap2, *lheap3; /* Pointer to local heaps */
    haddr_t     lheap_addr, lheap_addr2, lheap_addr3; /* Local heap addresses */
    H5O_loc_t	oh_loc;                 /* Object header location */
    time_t	time_new;               /* Time value for modification time message */
    unsigned    rc;                     /* Refcount for object */

    TESTING("object header creation in cache");

    /* Make a copy of the FAPL */
    if((my_fapl = H5Pcopy(fapl)) < 0)
        FAIL_STACK_ERROR

    /* Tweak down the size of the metadata cache to only 64K */
    mdc_config.version = H5AC__CURR_CACHE_CONFIG_VERSION;
    if(H5Pget_mdc_config(my_fapl, &mdc_config) < 0)
        FAIL_STACK_ERROR
    mdc_config.set_initial_size = TRUE;
    mdc_config.initial_size = 32 * 1024;
    mdc_config.max_size = 64 * 1024;
    mdc_config.min_size = 8 * 1024;
    if(H5Pset_mdc_config(my_fapl, &mdc_config) < 0)
        FAIL_STACK_ERROR

    /* Make a copy of the default DXPL */
    if((my_dxpl = H5Pcopy(H5P_DATASET_XFER_DEFAULT)) < 0)
        FAIL_STACK_ERROR

    /* Create the file to operate on */
    if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, my_fapl)) < 0)
        FAIL_STACK_ERROR
    if(H5Pclose(my_fapl) < 0)
	FAIL_STACK_ERROR
    if(NULL == (f = (H5F_t *)H5I_object(file)))
        FAIL_STACK_ERROR
    if(H5AC_ignore_tags(f) < 0)
        FAIL_STACK_ERROR

    /* Create object (local heap) that occupies most of cache */
    if(H5HL_create(f, my_dxpl, (31 * 1024), &lheap_addr) < 0)
        FAIL_STACK_ERROR

    /* Protect local heap (which actually pins it in the cache) */
    if(NULL == (lheap = H5HL_protect(f, my_dxpl, lheap_addr, H5AC__READ_ONLY_FLAG)))
        FAIL_STACK_ERROR

    /* Create an object header */
    HDmemset(&oh_loc, 0, sizeof(oh_loc));
    if(H5O_create(f, my_dxpl, (size_t)2048, (size_t)1, H5P_GROUP_CREATE_DEFAULT, &oh_loc/*out*/) < 0)
        FAIL_STACK_ERROR

    /* Query object header information */
    rc = 0;
    if(H5O_get_rc(&oh_loc, my_dxpl, &rc) < 0)
        FAIL_STACK_ERROR
    if(0 != rc)
        TEST_ERROR

    /* Create object (local heap) that occupies most of cache */
    if(H5HL_create(f, my_dxpl, (31 * 1024), &lheap_addr2) < 0)
        FAIL_STACK_ERROR

    /* Protect local heap (which actually pins it in the cache) */
    if(NULL == (lheap2 = H5HL_protect(f, my_dxpl, lheap_addr2, H5AC__READ_ONLY_FLAG)))
        FAIL_STACK_ERROR

    /* Unprotect local heap (which actually unpins it from the cache) */
    if(H5HL_unprotect(lheap2) < 0)
        FAIL_STACK_ERROR

    /* Create object header message in new object header */
    time_new = 11111111;
    if(H5O_msg_create(&oh_loc, H5O_MTIME_NEW_ID, 0, 0, &time_new, my_dxpl) < 0)
        FAIL_STACK_ERROR

    /* Create object (local heap) that occupies most of cache */
    if(H5HL_create(f, my_dxpl, (31 * 1024), &lheap_addr3) < 0)
        FAIL_STACK_ERROR

    /* Protect local heap (which actually pins it in the cache) */
    if(NULL == (lheap3 = H5HL_protect(f, my_dxpl, lheap_addr3, H5AC__READ_ONLY_FLAG)))
        FAIL_STACK_ERROR

    /* Unprotect local heap (which actually unpins it from the cache) */
    if(H5HL_unprotect(lheap3) < 0)
        FAIL_STACK_ERROR

    /* Query object header information */
    /* (Note that this is somewhat of a weak test, since it doesn't actually
     *  verify that the object header was evicted from the cache, but it's
     *  very difficult to verify when an entry is evicted from the cache in
     *  a non-invasive way -QAK)
     */
    rc = 0;
    if(H5O_get_rc(&oh_loc, my_dxpl, &rc) < 0)
        FAIL_STACK_ERROR
    if(0 != rc)
        TEST_ERROR

    /* Decrement reference count o object header */
    if(H5O_dec_rc_by_loc(&oh_loc, my_dxpl) < 0)
        FAIL_STACK_ERROR

    /* Close object header created */
    if(H5O_close(&oh_loc) < 0)
        FAIL_STACK_ERROR

    /* Unprotect local heap (which actually unpins it from the cache) */
    if(H5HL_unprotect(lheap) < 0)
        FAIL_STACK_ERROR

    if(H5Pclose(my_dxpl) < 0)
	FAIL_STACK_ERROR
    if(H5Fclose(file) < 0)
	FAIL_STACK_ERROR

    PASSED();

    return 0;

error:
    H5E_BEGIN_TRY {
        H5Fclose(file);
    } H5E_END_TRY;

    return -1;
} /* test_ohdr_cache() */
Exemple #28
0
/*-------------------------------------------------------------------------
 * Function:    ck_new_links
 *
 * Purpose:     Open the file created in the first step and check that the
 *              links look correct.
 *
 * Return:      Success:        0
 *
 *              Failure:        -1
 *
 * Programmer:  Raymond Lu
 *              Thursday, April 25, 2002
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static int
ck_new_links(hid_t fapl)
{
    hid_t 		file;
    H5G_stat_t		sb_dset, sb_hard1, sb_hard2, sb_soft1, sb_soft2;
    char 		filename[NAME_BUF_SIZE];
    char 		linkval[LINK_BUF_SIZE];

    TESTING("new link queries");

    /* Open the file */
    h5_fixname(FILENAME[1], fapl, filename, sizeof filename);
    if ((file=H5Fopen(filename, H5F_ACC_RDONLY, fapl))<0) {
        goto error;
    }

    /* Get hard link info */
    if(H5Gget_objinfo(file, "/grp1/dataset2", TRUE, &sb_dset)<0)
	goto error;
    if(H5Gget_objinfo(file, "/grp1/hard1", TRUE, &sb_hard1)<0)
	goto error;
    if(H5Gget_objinfo(file, "/grp2/hard2", TRUE, &sb_hard2)<0)
	goto error;

    /* Check hard links */
    if(H5G_DATASET!=sb_hard1.type || H5G_DATASET!=sb_hard2.type) {
	H5_FAILED();
	puts("    Unexpected object type, should have been a dataset");
	goto error;
    }
    if( sb_dset.objno[0]!=sb_hard1.objno[0] ||
        sb_dset.objno[1]!=sb_hard1.objno[1] ||
        sb_dset.objno[0]!=sb_hard2.objno[0] ||
        sb_dset.objno[1]!=sb_hard2.objno[1] ) {
	H5_FAILED();
	puts("    Hard link test failed.  Link seems not to point to the ");
	puts("    expected file location.");
	goto error;
    }

    /* Get soft link info */
    if(H5Gget_objinfo(file, "/grp1/soft1", TRUE, &sb_soft1)<0) goto error;
    if(H5Gget_objinfo(file, "/grp2/soft2", TRUE, &sb_soft2)<0) goto error;

    /* Check soft links */
    if(H5G_DATASET!=sb_soft1.type || H5G_DATASET!=sb_soft2.type) {
        H5_FAILED();
        puts("    Unexpected object type, should have been a dataset");
        goto error;
    }

    if( sb_dset.objno[0]!=sb_soft1.objno[0] ||
        sb_dset.objno[1]!=sb_soft1.objno[1] ||
        sb_dset.objno[0]!=sb_soft2.objno[0] ||
        sb_dset.objno[1]!=sb_soft2.objno[1] ) {
        H5_FAILED();
        puts("    Soft link test failed.  Link seems not to point to the ");
        puts("    expected file location.");
        goto error;
    }

    if (H5Gget_linkval(file, "grp2/soft2", sizeof linkval, linkval)<0) {
        goto error;
    }
    if (HDstrcmp(linkval, "/grp1/dataset2")) {
        H5_FAILED();
        puts("    Soft link test failed. Wrong link value");
        goto error;
    }

    /* Cleanup */
    if(H5Fclose(file)<0) goto error;
    PASSED();
    return 0;

  error:
    return -1;
}
Exemple #29
0
/*
 *  Verify that messages are moved forward into a "continuation message":
 *	Create an object header with several continuation chunks
 *	Remove a message in the last chunk
 *	The remaining message(s) in the last chunk should be moved forward into the continuation message
 *	The process will repeat when the continuation message is big enough to hold all the
 *		messages in the last chunk.
 *	Result: the number of chunks should be reduced
 */
static herr_t
test_cont(char *filename, hid_t fapl)
{
    hid_t	file=-1;
    H5F_t	*f = NULL;
    H5O_hdr_info_t hdr_info;
    H5O_loc_t	oh_locA, oh_locB;
    time_t	time_new;
    const char	*short_name = "T";
    const char	*long_name = "This is the message";
    size_t	nchunks;

    TESTING("object header continuation block");

    HDmemset(&oh_locA, 0, sizeof(oh_locA));
    HDmemset(&oh_locB, 0, sizeof(oh_locB));

    /* Create the file to operate on */
    if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) TEST_ERROR
    if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR
    if (H5AC_ignore_tags(f) < 0) {
	H5_FAILED();
	H5Eprint2(H5E_DEFAULT, stdout);
	goto error;
    }

    if(H5O_create(f, H5P_DATASET_XFER_DEFAULT, (size_t)H5O_MIN_SIZE, (size_t)0, H5P_GROUP_CREATE_DEFAULT, &oh_locA/*out*/) < 0)
            FAIL_STACK_ERROR

    if(H5O_create(f, H5P_DATASET_XFER_DEFAULT, (size_t)H5O_MIN_SIZE, (size_t)0, H5P_GROUP_CREATE_DEFAULT, &oh_locB/*out*/) < 0)
            FAIL_STACK_ERROR

    time_new = 11111111;

    if(H5O_msg_create(&oh_locA, H5O_NAME_ID, 0, 0, &long_name, H5P_DATASET_XFER_DEFAULT) < 0)
	FAIL_STACK_ERROR

    if(H5O_msg_create(&oh_locB, H5O_MTIME_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
	FAIL_STACK_ERROR
    if(H5O_msg_create(&oh_locB, H5O_MTIME_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
	FAIL_STACK_ERROR
    if(H5O_msg_create(&oh_locB, H5O_MTIME_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
	FAIL_STACK_ERROR

    if(H5O_msg_create(&oh_locA, H5O_MTIME_NEW_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
	FAIL_STACK_ERROR

    if(H5O_msg_create(&oh_locB, H5O_MTIME_ID, 0, 0, &time_new, H5P_DATASET_XFER_DEFAULT) < 0)
        FAIL_STACK_ERROR

    if(H5O_msg_create(&oh_locA, H5O_NAME_ID, 0, 0, &short_name, H5P_DATASET_XFER_DEFAULT) < 0)
	FAIL_STACK_ERROR

    if(1 != H5O_link(&oh_locA, 1, H5P_DATASET_XFER_DEFAULT))
        FAIL_STACK_ERROR
    if(1 != H5O_link(&oh_locB, 1, H5P_DATASET_XFER_DEFAULT))
        FAIL_STACK_ERROR
    if(H5AC_flush(f, H5P_DATASET_XFER_DEFAULT) < 0)
	FAIL_STACK_ERROR
    if(H5O_expunge_chunks_test(&oh_locA, H5P_DATASET_XFER_DEFAULT) < 0)
	FAIL_STACK_ERROR

    if(H5O_get_hdr_info(&oh_locA, H5P_DATASET_XFER_DEFAULT, &hdr_info) < 0)
	FAIL_STACK_ERROR
    nchunks = hdr_info.nchunks;

    /* remove the 1st H5O_NAME_ID message */
    if(H5O_msg_remove(&oh_locA, H5O_NAME_ID, 0, FALSE, H5P_DATASET_XFER_DEFAULT) < 0)
	FAIL_STACK_ERROR

    if(H5O_get_hdr_info(&oh_locA, H5P_DATASET_XFER_DEFAULT, &hdr_info) < 0)
	FAIL_STACK_ERROR

    if(hdr_info.nchunks >= nchunks)
	TEST_ERROR

    if(H5O_close(&oh_locA) < 0)
	FAIL_STACK_ERROR
    if(H5O_close(&oh_locB) < 0)
	FAIL_STACK_ERROR
    if(H5Fclose(file) < 0)
	FAIL_STACK_ERROR

    PASSED();


    return 0;

error:
    H5E_BEGIN_TRY {
        H5O_close(&oh_locA);
        H5O_close(&oh_locB);
        H5Fclose(file);
    } H5E_END_TRY;

    return -1;
} /* test_cont() */
Exemple #30
0
/*-------------------------------------------------------------------------
 * Function:    toomany
 *
 * Purpose:     Build a file with too many symbolic links
 *
 * Return:      Success:        0
 *
 *              Failure:        -1
 *
 * Programmer:  Quincey Koziol
 *              Tuesday, August 9, 2005
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static int
toomany(hid_t fapl)
{
    hid_t		fid = (-1);     /* File ID */
    hid_t		gid = (-1);     /* Group ID */
    hid_t		gid2 = (-1);    /* Datatype ID */
    char                objname[NAME_BUF_SIZE];         /* Object name */
    ssize_t             name_len;       /* Length of object name */
    char		filename[NAME_BUF_SIZE]; 

    TESTING("too many links");

    /* Make certain test is valid */
    /* XXX: should probably make a "generic" test that creates the proper
     *          # of links based on this value - QAK
     */
    HDassert(H5G_NLINKS == 16);

    /* Create files */
    h5_fixname(FILENAME[1], fapl, filename, sizeof filename);
    if((fid=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl))<0) TEST_ERROR;

    /* Create group with short name in file (used as target for hard links) */
    if((gid=H5Gcreate (fid, "final", (size_t)0))<0) TEST_ERROR;

    /* Create chain of hard links to existing object (no limit on #) */
    if(H5Glink2(fid, "final", H5G_LINK_HARD, fid, "hard1") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard1", H5G_LINK_HARD, fid, "hard2") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard2", H5G_LINK_HARD, fid, "hard3") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard3", H5G_LINK_HARD, fid, "hard4") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard4", H5G_LINK_HARD, fid, "hard5") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard5", H5G_LINK_HARD, fid, "hard6") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard6", H5G_LINK_HARD, fid, "hard7") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard7", H5G_LINK_HARD, fid, "hard8") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard8", H5G_LINK_HARD, fid, "hard9") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard9", H5G_LINK_HARD, fid, "hard10") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard10", H5G_LINK_HARD, fid, "hard11") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard11", H5G_LINK_HARD, fid, "hard12") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard12", H5G_LINK_HARD, fid, "hard13") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard13", H5G_LINK_HARD, fid, "hard14") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard14", H5G_LINK_HARD, fid, "hard15") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard15", H5G_LINK_HARD, fid, "hard16") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard16", H5G_LINK_HARD, fid, "hard17") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard17", H5G_LINK_HARD, fid, "hard18") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard18", H5G_LINK_HARD, fid, "hard19") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard19", H5G_LINK_HARD, fid, "hard20") < 0) TEST_ERROR;
    if(H5Glink2(fid, "hard20", H5G_LINK_HARD, fid, "hard21") < 0) TEST_ERROR;

    /* Create chain of soft links to existing object (limited) */
    if(H5Glink2(fid, "final", H5G_LINK_SOFT, fid, "soft1") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft1", H5G_LINK_SOFT, fid, "soft2") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft2", H5G_LINK_SOFT, fid, "soft3") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft3", H5G_LINK_SOFT, fid, "soft4") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft4", H5G_LINK_SOFT, fid, "soft5") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft5", H5G_LINK_SOFT, fid, "soft6") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft6", H5G_LINK_SOFT, fid, "soft7") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft7", H5G_LINK_SOFT, fid, "soft8") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft8", H5G_LINK_SOFT, fid, "soft9") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft9", H5G_LINK_SOFT, fid, "soft10") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft10", H5G_LINK_SOFT, fid, "soft11") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft11", H5G_LINK_SOFT, fid, "soft12") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft12", H5G_LINK_SOFT, fid, "soft13") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft13", H5G_LINK_SOFT, fid, "soft14") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft14", H5G_LINK_SOFT, fid, "soft15") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft15", H5G_LINK_SOFT, fid, "soft16") < 0) TEST_ERROR;
    if(H5Glink2(fid, "soft16", H5G_LINK_SOFT, fid, "soft17") < 0) TEST_ERROR;

    /* Close objects */
    if(H5Gclose(gid)<0) TEST_ERROR;
    if(H5Fclose(fid)<0) TEST_ERROR;

    /* Open file */
    if((fid=H5Fopen(filename, H5F_ACC_RDWR, fapl))<0) TEST_ERROR;

    /* Open object through last hard link */
    if((gid = H5Gopen(fid, "hard21")) < 0) TEST_ERROR;

    /* Check name */
    if((name_len = H5Iget_name( gid, objname, (size_t)NAME_BUF_SIZE )) < 0) TEST_ERROR
    if(HDstrcmp(objname, "/hard21")) TEST_ERROR

    /* Create object in hard-linked group */
    if((gid2 = H5Gcreate(gid, "new_hard", (size_t)0)) < 0) TEST_ERROR

    /* Close group in hard-linked group */
    if(H5Gclose(gid2) < 0) TEST_ERROR

    /* Close hard-linked object */
    if(H5Gclose(gid) < 0) TEST_ERROR;

    /* Open object through too deep soft link */
    H5E_BEGIN_TRY {
        gid = H5Gopen(fid, "soft17");
    } H5E_END_TRY;
    if (gid >= 0) {
	H5_FAILED();
	puts("    Should have failed for sequence of too many nested links.");
	goto error;
    }

    /* Open object through lesser soft link */
    if((gid = H5Gopen(fid, "soft16")) < 0) TEST_ERROR;

    /* Check name */
    if((name_len = H5Iget_name( gid, objname, (size_t)NAME_BUF_SIZE )) < 0) TEST_ERROR
    if(HDstrcmp(objname, "/soft16")) TEST_ERROR

    /* Create object in external file */
    if((gid2 = H5Gcreate(gid, "new_soft", (size_t)0)) < 0) TEST_ERROR

    /* Close group in external file */
    if(H5Gclose(gid2) < 0) TEST_ERROR

    /* Close external object */
    if(H5Gclose(gid) < 0) TEST_ERROR;

    /* Close first file */
    if(H5Fclose(fid)<0) TEST_ERROR;

    PASSED();
    return 0;

 error:
    H5E_BEGIN_TRY {
    	H5Gclose (gid2);
    	H5Gclose (gid);
    	H5Fclose (fid);
    } H5E_END_TRY;
    return -1;
} /* end toomany() */