/* read 'count' bytes from a (unix or pvfs2) file 'src', placing the result in
* 'buffer' */
size_t generic_read(file_object *src, char *buffer,
int64_t offset, size_t count, PVFS_credentials *credentials)
{
PVFS_Request mem_req, file_req;
PVFS_sysresp_io resp_io;
int ret;
if(src->fs_type == UNIX_FILE)
return (read(src->u.ufs.fd, buffer, count));
else
{
file_req = PVFS_BYTE;
ret = PVFS_Request_contiguous(count, PVFS_BYTE, &mem_req);
if (ret < 0)
{
fprintf(stderr, "Error: PVFS_Request_contiguous failure\n");
return (ret);
}
ret = PVFS_sys_read(src->u.pvfs2.ref, file_req, offset,
buffer, mem_req, credentials, &resp_io, hints);
if (ret == 0)
{
PVFS_Request_free(&mem_req);
return (resp_io.total_completed);
}
else
PVFS_perror("PVFS_sys_read", ret);
}
return (ret);
}
/**
* PVFSIOSHandle::Pread: A wrapper around the PVFS read call
*
* @param buf the buffer to read into
* @param count the number of bytes to read
* @param offset the offset to read from
* @param bytes_read return bytes that have been read(0, size count)
* @return PLFS_SUCCESS or PLFS_E*
*/
plfs_error_t PVFSIOSHandle::Pread(void* buf, size_t count,
off_t offset, ssize_t *bytes_read) {
PVFS_Request mem_req, file_req;
PVFS_sysresp_io resp_io;
int pev;
file_req = PVFS_BYTE; /* reading bytes from the file ... */
/* ... into a contig buffer of size count */
pev = PVFS_Request_contiguous(count, PVFS_BYTE, &mem_req);
if (pev < 0) {
return errno_to_plfs_error(-get_err(pev));
}
pev = PVFS_sys_read(this->ref, file_req, offset, buf, mem_req,
&this->creds, &resp_io);
/*
* pvfs2fuse doesn't PVFS_Request_free on error, this seem like a
* memory leak bug to me, since mem_req is a pointer that gets
* malloc'd and set in PVFS_Request_contiguous()... you still
* gotta free it even if PVFS_sys_real fails.
*/
PVFS_Request_free(&mem_req);
if (pev < 0) {
/* XXX: don't need to free mem_req in this case? */
return errno_to_plfs_error(-get_err(pev));
}
*bytes_read = resp_io.total_completed;
return PLFS_SUCCESS;
}
/* Preconditions: none
* Parameters: testcase - the test case that is checked for this function
* Postconditions: returns error code of readdir
* Has 2 test cases
*/
static int test_read(void)
{
PVFS_credentials credentials;
PVFS_sysresp_lookup resp_lk;
PVFS_Request req_io;
PVFS_sysresp_io resp_io;
char *filename;
char io_buffer[100];
int fs_id, ret;
filename = (char *) malloc(sizeof(char) * 100);
filename = strcpy(filename, "name");
memset(&req_io, 0, sizeof(PVFS_Request));
memset(&resp_io, 0, sizeof(PVFS_sysresp_io));
PVFS_util_gen_credentials(&credentials);
memset(&resp_lk, 0, sizeof(PVFS_sysresp_lookup));
fs_id = 9;
ret = PVFS_sys_lookup(fs_id, filename, &credentials,
&resp_lk, PVFS2_LOOKUP_LINK_NO_FOLLOW);
if (ret < 0)
{
debug_printf("test_pvfs_datatype_hvector: lookup failed "
"on %s\n", filename);
}
ret =
PVFS_sys_read(resp_lk.ref, req_io, 0, io_buffer, NULL, &credentials,
&resp_io);
return ret;
}
static int test_io_on_dir(int testcase)
{
int fs_id, ret,i;
PVFS_credentials credentials;
PVFS_sysresp_lookup resp_lookup;
PVFS_Request req_io;
PVFS_Request req_mem;
PVFS_sysresp_io resp_io;
PVFS_offset file_req_offset = 0;
char *name;
char io_buffer[100];
ret = -2;
name = (char *) malloc(sizeof(char) * 100);
name = strcpy(name, "/");
if (initialize_sysint() < 0)
{
debug_printf("ERROR UNABLE TO INIT SYSTEM INTERFACE\n");
return -1;
}
fs_id = pvfs_helper.fs_id;
PVFS_util_gen_credentials(&credentials);
if((ret = PVFS_sys_lookup(
fs_id, name, &credentials,
&resp_lookup, PVFS2_LOOKUP_LINK_NO_FOLLOW)) < 0)
{
fprintf(stderr,"lookup failed\n");
return ret;
}
memset(&req_io, 0, sizeof(req_io));
memset(&req_mem, 0, sizeof(req_mem));
switch(testcase)
{
case 0:
ret = PVFS_sys_read(resp_lookup.ref, req_io, file_req_offset, io_buffer, req_mem, &credentials, &resp_io);
break;
case 1:
for(i = 0; i < 100; i++)
{
io_buffer[i] = 'a';
}
ret = PVFS_sys_write(resp_lookup.ref, req_io, file_req_offset, io_buffer, req_mem, &credentials, &resp_io);
break;
}
/* finalize_sysint(); */
return ret;
}
static int test_read_beyond(void){
PVFS_sysresp_lookup resp_lk;
PVFS_Request req_io;
PVFS_Request req_mem;
PVFS_sysresp_io resp_io;
PVFS_credentials credentials;
PVFS_offset file_req_offset = 0;
char *filename;
char *io_buffer;
int fs_id, ret;
PVFS_sysresp_getattr resp;
uint32_t attrmask;
attrmask = PVFS_ATTR_SYS_ALL_NOSIZE;
filename = (char *) malloc(sizeof(char) * 100);
filename = strcpy(filename, "name");
memset(&req_io, 0, sizeof(PVFS_Request));
memset(&req_mem, 0, sizeof(PVFS_Request));
memset(&resp_io, 0, sizeof(PVFS_sysresp_io));
memset(&resp_lk, 0, sizeof(PVFS_sysresp_lookup));
PVFS_util_gen_credentials(&credentials);
if (initialize_sysint() < 0)
{
debug_printf("UNABLE TO INIT THE SYSTEM INTERFACE\n");
return -1;
}
fs_id = pvfs_helper.fs_id;
ret = PVFS_sys_lookup(fs_id, filename, &credentials,
&resp_lk, PVFS2_LOOKUP_LINK_NO_FOLLOW);
if (ret < 0)
{
debug_printf("test_pvfs_datatype_hvector: lookup failed "
"on %s\n", filename);
}
if((ret = PVFS_sys_getattr(resp_lk.ref, attrmask, &credentials, &resp)) < 0)
return ret;
io_buffer = malloc(sizeof(char)*(size_t)resp.attr.size+100);
ret = PVFS_sys_read(resp_lk.ref, req_io, file_req_offset, io_buffer, req_mem, &credentials, &resp_io);
if(ret < 0){
debug_printf("write failed on %s\n", filename);
}
/* finalize_sysint(); */
return ret;
}
/**
* PVFSIOSHandle::GetDataBuf: load some data into buffers. PVFS
* doesn't support mmap, so we will malloc/free the buffer.
*
* @param bufp allocated buffer pointer put here
* @param length length of the data we want
* @return PLFS_SUCCESS or PLFS_E*
*/
plfs_error_t PVFSIOSHandle::GetDataBuf(void **bufp, size_t length) {
size_t bytes_read;
char *buffer;
PVFS_Request mem_req, file_req;
PVFS_sysresp_io resp_io;
int pev, nev, goteof;
/* init and allocate a buffer */
bytes_read = 0;
buffer = (char *)malloc(length);
if (!buffer) {
return(PLFS_ENOMEM);
}
pev = goteof = 0;
while (bytes_read < length) {
/*
* describe the format of the file and the buffer we are loading
* the data in. in this case it is simple: all contiguous.
*/
file_req = PVFS_BYTE; /* reading bytes from the file ... */
/* ... into a contig buffer of size length-bytes_read */
pev = PVFS_Request_contiguous(length-bytes_read, PVFS_BYTE, &mem_req);
if (pev < 0) {
break;
}
pev = PVFS_sys_read(this->ref, file_req, bytes_read /*offset*/,
buffer+bytes_read, mem_req, &this->creds, &resp_io);
PVFS_Request_free(&mem_req); /* XXX: see comment in Pread */
if (pev < 0) {
break;
}
if (resp_io.total_completed == 0) {
goteof++;
break;
}
bytes_read += resp_io.total_completed;
}
if (pev < 0 || goteof) {
free(buffer);
nev = (goteof) ? -EWOULDBLOCK : get_err(pev);
return errno_to_plfs_error(-nev);
}
*bufp = buffer;
return PLFS_SUCCESS;
}
int ADIOI_PVFS2_StridedDtypeIO(ADIO_File fd, void *buf, int count,
MPI_Datatype datatype, int file_ptr_type,
ADIO_Offset offset, ADIO_Status *status, int
*error_code,
int rw_type)
{
int ret = -1, filetype_is_contig = -1;
MPI_Count filetype_size = -1;
int num_filetypes = 0, cur_flat_file_reg_off = 0;
PVFS_Request tmp_mem_req, mem_req, tmp_file_req, file_req;
PVFS_sysresp_io resp_io;
ADIO_Offset off = -1, bytes_into_filetype = 0;
MPI_Aint filetype_extent = -1;
int i = -1;
MPI_Count etype_size;
PVFS_size pvfs_disp = -1;
ADIOI_Flatlist_node *flat_file_p = ADIOI_Flatlist;
/* Use for offseting the PVFS2 filetype */
int pvfs_blk = 1;
ADIOI_PVFS2_fs *pvfs_fs;
static char myname[] = "ADIOI_PVFS2_STRIDED_DTYPE";
memset(&tmp_mem_req, 0, sizeof(PVFS_Request));
memset(&mem_req, 0, sizeof(PVFS_Request));
memset(&tmp_file_req, 0, sizeof(PVFS_Request));
memset(&file_req, 0, sizeof(PVFS_Request));
pvfs_fs = (ADIOI_PVFS2_fs*)fd->fs_ptr;
ADIOI_Datatype_iscontig(fd->filetype, &filetype_is_contig);
/* changed below if error */
*error_code = MPI_SUCCESS;
/* datatype is the memory type
* fd->filetype is the file type */
MPI_Type_size_x(fd->filetype, &filetype_size);
if (filetype_size == 0) {
*error_code = MPI_SUCCESS;
return -1;
}
MPI_Type_extent(fd->filetype, &filetype_extent);
MPI_Type_size_x(fd->etype, &etype_size);
if (filetype_size == 0) {
*error_code = MPI_SUCCESS;
return -1;
}
/* offset is in units of etype relative to the filetype. We
* convert this to off in terms of actual data bytes (the offset
* minus the number of bytes that are not used). We are allowed
* to do this since PVFS2 handles offsets with respect to a
* file_req in bytes, otherwise we would have to convert into a
* pure byte offset as is done in other methods. Explicit offset
* case is handled by using fd->disp and byte-converted off. */
pvfs_disp = fd->disp;
if (file_ptr_type == ADIO_INDIVIDUAL)
{
if (filetype_is_contig)
{
off = fd->fp_ind - fd->disp;
}
else
{
int flag = 0;
/* Should have already been flattened in ADIO_Open*/
while (flat_file_p->type != fd->filetype)
{
flat_file_p = flat_file_p->next;
}
num_filetypes = -1;
while (!flag)
{
num_filetypes++;
for (i = 0; i < flat_file_p->count; i++)
{
/* Start on a non zero-length region */
if (flat_file_p->blocklens[i])
{
if (fd->disp + flat_file_p->indices[i] +
(num_filetypes * filetype_extent) +
flat_file_p->blocklens[i] > fd->fp_ind &&
fd->disp + flat_file_p->indices[i] <=
fd->fp_ind)
{
cur_flat_file_reg_off = fd->fp_ind -
(fd->disp + flat_file_p->indices[i] +
(num_filetypes * filetype_extent));
flag = 1;
break;
}
else
bytes_into_filetype += flat_file_p->blocklens[i];
}
}
}
/* Impossible that we don't find it in this datatype */
assert(i != flat_file_p->count);
off = bytes_into_filetype + cur_flat_file_reg_off;
}
}
else /* ADIO_EXPLICIT */
{
off = etype_size * offset;
}
#ifdef DEBUG_DTYPE
fprintf(stderr, "ADIOI_PVFS2_StridedDtypeIO: (fd->fp_ind=%Ld,fd->disp=%Ld,"
" offset=%Ld),(pvfs_disp=%Ld,off=%Ld)\n",
fd->fp_ind, fd->disp, offset, pvfs_disp, off);
#endif
/* Convert the MPI memory and file datatypes into
* PVFS2 datatypes */
ret = convert_mpi_pvfs2_dtype(&datatype, &tmp_mem_req);
if (ret < 0)
{
goto error_state;
}
ret = convert_mpi_pvfs2_dtype(&(fd->filetype), &tmp_file_req);
if (ret < 0)
{
goto error_state;
}
ret = PVFS_Request_contiguous(count, tmp_mem_req, &mem_req);
if (ret != 0) /* TODO: convert this to MPIO error handling */
fprintf(stderr, "ADIOI_PVFS2_stridedDtypeIO: error in final"
" CONTIG memory type\n");
PVFS_Request_free(&tmp_mem_req);
/* pvfs_disp is used to offset the filetype */
ret = PVFS_Request_hindexed(1, &pvfs_blk, &pvfs_disp,
tmp_file_req, &file_req);
if (ret != 0)
fprintf(stderr, "ADIOI_PVFS2_StridedDtypeIO: error in final"
" HINDEXED file type\n");
PVFS_Request_free(&tmp_file_req);
if (rw_type == READ)
ret = PVFS_sys_read(pvfs_fs->object_ref, file_req, off, buf,
mem_req, &(pvfs_fs->credentials), &resp_io);
else
ret = PVFS_sys_write(pvfs_fs->object_ref, file_req, off, buf,
mem_req, &(pvfs_fs->credentials), &resp_io);
if (ret != 0) {
fprintf(stderr, "ADIOI_PVFS2_StridedDtypeIO: Warning - PVFS_sys_"
"read/write returned %d and completed %Ld bytes.\n",
ret, (long long)resp_io.total_completed);
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(ret),
"Error in PVFS_sys_io \n", 0);
goto error_state;
}
if (file_ptr_type == ADIO_INDIVIDUAL)
{
fd->fp_ind = off += resp_io.total_completed;
}
error_state:
fd->fp_sys_posn = -1; /* set it to null. */
PVFS_Request_free(&mem_req);
PVFS_Request_free(&file_req);
#ifdef DEBUG_DTYPE
fprintf(stderr, "ADIOI_PVFS2_StridedDtypeIO: "
"resp_io.total_completed=%Ld,ret=%d\n",
resp_io.total_completed, ret);
#endif
#ifdef HAVE_STATUS_SET_BYTES
MPIR_Status_set_bytes(status, datatype, resp_io.total_completed);
/* This is a temporary way of filling in status. The right way is to
* keep track of how much data was actually acccessed by
* ADIOI_BUFFERED operations */
#endif
return ret;
}
void ADIOI_PVFS2_ReadContig(ADIO_File fd, void *buf, int count,
MPI_Datatype datatype, int file_ptr_type,
ADIO_Offset offset, ADIO_Status *status,
int *error_code)
{
int ret, datatype_size, len;
PVFS_Request file_req, mem_req;
PVFS_sysresp_io resp_io;
ADIOI_PVFS2_fs *pvfs_fs;
static char myname[] = "ADIOI_PVFS2_READCONTIG";
pvfs_fs = (ADIOI_PVFS2_fs*)fd->fs_ptr;
MPI_Type_size(datatype, &datatype_size);
len = datatype_size * count;
ret = PVFS_Request_contiguous(len, PVFS_BYTE, &mem_req);
/* --BEGIN ERROR HANDLING-- */
if (ret != 0) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(ret),
"Error in pvfs_request_contig (memory)", 0);
return;
}
/* --END ERROR HANDLING-- */
ret = PVFS_Request_contiguous(len, PVFS_BYTE, &file_req);
/* --BEGIN ERROR HANDLING-- */
if (ret != 0) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(ret),
"Error in pvfs_request_contig (file)", 0);
return;
}
/* --END ERROR HANDLING-- */
if (file_ptr_type == ADIO_INDIVIDUAL) {
/* copy individual file pointer into offset variable, continue */
offset = fd->fp_ind;
}
#ifdef ADIOI_MPE_LOGGING
MPE_Log_event( ADIOI_MPE_read_a, 0, NULL );
#endif
ret = PVFS_sys_read(pvfs_fs->object_ref, file_req, offset, buf,
mem_req, &(pvfs_fs->credentials), &resp_io);
#ifdef ADIOI_MPE_LOGGING
MPE_Log_event( ADIOI_MPE_read_b, 0, NULL );
#endif
/* --BEGIN ERROR HANDLING-- */
if (ret != 0 ) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(ret),
"Error in PVFS_sys_read", 0);
goto fn_exit;
}
/* --END ERROR HANDLING-- */
if (file_ptr_type == ADIO_INDIVIDUAL) {
fd->fp_ind += (int) resp_io.total_completed;
/* TODO: WHY THE INT CAST? */
}
fd->fp_sys_posn = offset + (int)resp_io.total_completed;
#ifdef HAVE_STATUS_SET_BYTES
MPIR_Status_set_bytes(status, datatype, (int)resp_io.total_completed);
#endif
*error_code = MPI_SUCCESS;
fn_exit:
PVFS_Request_free(&mem_req);
PVFS_Request_free(&file_req);
return;
}
void ADIOI_PVFS2_OldReadStrided(ADIO_File fd, void *buf, int count,
MPI_Datatype datatype, int file_ptr_type,
ADIO_Offset offset, ADIO_Status *status, int
*error_code)
{
/* offset is in units of etype relative to the filetype. */
ADIOI_Flatlist_node *flat_buf, *flat_file;
int i, j, k, brd_size, frd_size=0, st_index=0;
int sum, n_etypes_in_filetype, size_in_filetype;
MPI_Count bufsize;
int n_filetypes, etype_in_filetype;
ADIO_Offset abs_off_in_filetype=0;
MPI_Count filetype_size, etype_size, buftype_size;
MPI_Aint filetype_extent, buftype_extent;
int buf_count, buftype_is_contig, filetype_is_contig;
ADIO_Offset off, disp, start_off, initial_off;
int flag, st_frd_size, st_n_filetypes;
int mem_list_count, file_list_count;
PVFS_size *mem_offsets;
int64_t *file_offsets;
int *mem_lengths;
int32_t *file_lengths;
int total_blks_to_read;
int max_mem_list, max_file_list;
int b_blks_read;
int f_data_read;
int size_read=0, n_read_lists, extra_blks;
int end_brd_size, end_frd_size;
int start_k, start_j, new_file_read, new_buffer_read;
int start_mem_offset;
PVFS_Request mem_req, file_req;
ADIOI_PVFS2_fs * pvfs_fs;
PVFS_sysresp_io resp_io;
int err_flag=0;
MPI_Offset total_bytes_read = 0;
static char myname[] = "ADIOI_PVFS2_ReadStrided";
#define MAX_ARRAY_SIZE 64
*error_code = MPI_SUCCESS; /* changed below if error */
ADIOI_Datatype_iscontig(datatype, &buftype_is_contig);
ADIOI_Datatype_iscontig(fd->filetype, &filetype_is_contig);
/* the HDF5 tests showed a bug in this list processing code (see many many
* lines down below). We added a workaround, but common HDF5 file types
* are actually contiguous and do not need the expensive workarond */
if (!filetype_is_contig) {
flat_file = ADIOI_Flatlist;
while (flat_file->type != fd->filetype) flat_file = flat_file->next;
if (flat_file->count == 1 && !buftype_is_contig)
filetype_is_contig = 1;
}
MPI_Type_size_x(fd->filetype, &filetype_size);
if ( ! filetype_size ) {
#ifdef HAVE_STATUS_SET_BYTES
MPIR_Status_set_bytes(status, datatype, 0);
#endif
*error_code = MPI_SUCCESS;
return;
}
MPI_Type_extent(fd->filetype, &filetype_extent);
MPI_Type_size_x(datatype, &buftype_size);
MPI_Type_extent(datatype, &buftype_extent);
etype_size = fd->etype_size;
bufsize = buftype_size * count;
pvfs_fs = (ADIOI_PVFS2_fs*)fd->fs_ptr;
if (!buftype_is_contig && filetype_is_contig) {
/* noncontiguous in memory, contiguous in file. */
int64_t file_offset;
int32_t file_length;
ADIOI_Flatten_datatype(datatype);
flat_buf = ADIOI_Flatlist;
while (flat_buf->type != datatype) flat_buf = flat_buf->next;
off = (file_ptr_type == ADIO_INDIVIDUAL) ? fd->fp_ind :
fd->disp + etype_size * offset;
file_list_count = 1;
file_offset = off;
file_length = 0;
total_blks_to_read = count*flat_buf->count;
b_blks_read = 0;
/* allocate arrays according to max usage */
if (total_blks_to_read > MAX_ARRAY_SIZE)
mem_list_count = MAX_ARRAY_SIZE;
else mem_list_count = total_blks_to_read;
mem_offsets = (PVFS_size*)ADIOI_Malloc(mem_list_count*sizeof(PVFS_size));
mem_lengths = (int*)ADIOI_Malloc(mem_list_count*sizeof(int));
/* TODO: CHECK RESULTS OF MEMORY ALLOCATION */
j = 0;
/* step through each block in memory, filling memory arrays */
while (b_blks_read < total_blks_to_read) {
for (i=0; i<flat_buf->count; i++) {
mem_offsets[b_blks_read % MAX_ARRAY_SIZE] =
/* TODO: fix this compiler warning */
((PVFS_size)buf + j*buftype_extent + flat_buf->indices[i]);
mem_lengths[b_blks_read % MAX_ARRAY_SIZE] =
flat_buf->blocklens[i];
file_length += flat_buf->blocklens[i];
b_blks_read++;
if (!(b_blks_read % MAX_ARRAY_SIZE) ||
(b_blks_read == total_blks_to_read)) {
/* in the case of the last read list call,
adjust mem_list_count */
if (b_blks_read == total_blks_to_read) {
mem_list_count = total_blks_to_read % MAX_ARRAY_SIZE;
/* in case last read list call fills max arrays */
if (!mem_list_count) mem_list_count = MAX_ARRAY_SIZE;
}
err_flag = PVFS_Request_hindexed(mem_list_count,
mem_lengths, mem_offsets, PVFS_BYTE, &mem_req);
if (err_flag < 0) break;
err_flag = PVFS_Request_contiguous(file_length,
PVFS_BYTE, &file_req);
if (err_flag < 0) break;
#ifdef ADIOI_MPE_LOGGING
MPE_Log_event( ADIOI_MPE_read_a, 0, NULL );
#endif
err_flag = PVFS_sys_read(pvfs_fs->object_ref, file_req,
file_offset, PVFS_BOTTOM, mem_req,
&(pvfs_fs->credentials), &resp_io);
#ifdef ADIOI_MPE_LOGGING
MPE_Log_event( ADIOI_MPE_read_b, 0, NULL );
#endif
/* --BEGIN ERROR HANDLING-- */
if (err_flag != 0) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(err_flag),
"Error in PVFS_sys_read", 0);
goto error_state;
}
PVFS_Request_free(&mem_req);
PVFS_Request_free(&file_req);
total_bytes_read += resp_io.total_completed;
/* --END ERROR HANDLING-- */
/* in the case of error or the last read list call,
* leave here */
if (err_flag || b_blks_read == total_blks_to_read) break;
file_offset += file_length;
file_length = 0;
}
} /* for (i=0; i<flat_buf->count; i++) */
j++;
} /* while (b_blks_read < total_blks_to_read) */
ADIOI_Free(mem_offsets);
ADIOI_Free(mem_lengths);
if (file_ptr_type == ADIO_INDIVIDUAL)
fd->fp_ind += total_bytes_read;
fd->fp_sys_posn = -1; /* set it to null. */
#ifdef HAVE_STATUS_SET_BYTES
MPIR_Status_set_bytes(status, datatype, bufsize);
/* This isa temporary way of filling in status. The right way is to
keep tracke of how much data was actually read adn placed in buf
by ADIOI_BUFFERED_READ. */
#endif
ADIOI_Delete_flattened(datatype);
return;
} /* if (!buftype_is_contig && filetype_is_contig) */
/* know file is noncontiguous from above */
/* noncontiguous in file */
/* filetype already flattened in ADIO_Open */
flat_file = ADIOI_Flatlist;
while (flat_file->type != fd->filetype) flat_file = flat_file->next;
disp = fd->disp;
initial_off = offset;
/* for each case - ADIO_Individual pointer or explicit, find the file
offset in bytes (offset), n_filetypes (how many filetypes into
file to start), frd_size (remaining amount of data in present
file block), and st_index (start point in terms of blocks in
starting filetype) */
if (file_ptr_type == ADIO_INDIVIDUAL) {
offset = fd->fp_ind; /* in bytes */
n_filetypes = -1;
flag = 0;
while (!flag) {
n_filetypes++;
for (i=0; i<flat_file->count; i++) {
if (disp + flat_file->indices[i] +
((ADIO_Offset) n_filetypes)*filetype_extent +
flat_file->blocklens[i] >= offset) {
st_index = i;
frd_size = (int) (disp + flat_file->indices[i] +
((ADIO_Offset) n_filetypes)*filetype_extent
+ flat_file->blocklens[i] - offset);
flag = 1;
break;
}
}
} /* while (!flag) */
} /* if (file_ptr_type == ADIO_INDIVIDUAL) */
else {
n_etypes_in_filetype = filetype_size/etype_size;
n_filetypes = (int) (offset / n_etypes_in_filetype);
etype_in_filetype = (int) (offset % n_etypes_in_filetype);
size_in_filetype = etype_in_filetype * etype_size;
sum = 0;
for (i=0; i<flat_file->count; i++) {
sum += flat_file->blocklens[i];
if (sum > size_in_filetype) {
st_index = i;
frd_size = sum - size_in_filetype;
abs_off_in_filetype = flat_file->indices[i] +
size_in_filetype - (sum - flat_file->blocklens[i]);
break;
}
}
/* abs. offset in bytes in the file */
offset = disp + ((ADIO_Offset) n_filetypes)*filetype_extent +
abs_off_in_filetype;
} /* else [file_ptr_type != ADIO_INDIVIDUAL] */
start_off = offset;
st_frd_size = frd_size;
st_n_filetypes = n_filetypes;
if (buftype_is_contig && !filetype_is_contig) {
/* contiguous in memory, noncontiguous in file. should be the most
common case. */
int mem_length=0;
intptr_t mem_offset;
i = 0;
j = st_index;
n_filetypes = st_n_filetypes;
mem_list_count = 1;
/* determine how many blocks in file to read */
f_data_read = ADIOI_MIN(st_frd_size, bufsize);
total_blks_to_read = 1;
if (j < (flat_file->count-1)) j++;
else {
j = 0;
n_filetypes++;
}
while (f_data_read < bufsize) {
f_data_read += flat_file->blocklens[j];
total_blks_to_read++;
if (j<(flat_file->count-1)) j++;
else j = 0;
}
j = st_index;
n_filetypes = st_n_filetypes;
n_read_lists = total_blks_to_read/MAX_ARRAY_SIZE;
extra_blks = total_blks_to_read%MAX_ARRAY_SIZE;
mem_offset = (intptr_t)buf;
mem_lengths = 0;
/* if at least one full readlist, allocate file arrays
at max array size and don't free until very end */
if (n_read_lists) {
file_offsets = (int64_t*)ADIOI_Malloc(MAX_ARRAY_SIZE*
sizeof(int64_t));
file_lengths = (int32_t*)ADIOI_Malloc(MAX_ARRAY_SIZE*
sizeof(int32_t));
}
/* if there's no full readlist allocate file arrays according
to needed size (extra_blks) */
else {
file_offsets = (int64_t*)ADIOI_Malloc(extra_blks*
sizeof(int64_t));
file_lengths = (int32_t*)ADIOI_Malloc(extra_blks*
sizeof(int32_t));
}
/* for file arrays that are of MAX_ARRAY_SIZE, build arrays */
for (i=0; i<n_read_lists; i++) {
file_list_count = MAX_ARRAY_SIZE;
if(!i) {
file_offsets[0] = offset;
file_lengths[0] = st_frd_size;
mem_length = st_frd_size;
}
for (k=0; k<MAX_ARRAY_SIZE; k++) {
if (i || k) {
file_offsets[k] = disp +
((ADIO_Offset)n_filetypes)*filetype_extent
+ flat_file->indices[j];
file_lengths[k] = flat_file->blocklens[j];
mem_lengths += file_lengths[k];
}
if (j<(flat_file->count - 1)) j++;
else {
j = 0;
n_filetypes++;
}
} /* for (k=0; k<MAX_ARRAY_SIZE; k++) */
err_flag = PVFS_Request_contiguous(mem_length,
PVFS_BYTE, &mem_req);
/* --BEGIN ERROR HANDLING-- */
if (err_flag != 0) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(err_flag),
"Error in PVFS_Request_contiguous (memory)", 0);
goto error_state;
}
/* --END ERROR HANDLING-- */
err_flag = PVFS_Request_hindexed(file_list_count, file_lengths,
file_offsets, PVFS_BYTE,
&file_req);
/* --BEGIN ERROR HANDLING-- */
if (err_flag != 0) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(err_flag),
"Error in PVFS_Request_hindexed (file)", 0);
goto error_state;
}
/* --END ERROR HANDLING-- */
/* PVFS_Request_hindexed already expresses the offsets into the
* file, so we should not pass in an offset if we are using
* hindexed for the file type */
#ifdef ADIOI_MPE_LOGGING
MPE_Log_event( ADIOI_MPE_read_a, 0, NULL );
#endif
err_flag = PVFS_sys_read(pvfs_fs->object_ref, file_req, 0,
(void *)mem_offset, mem_req,
&(pvfs_fs->credentials), &resp_io);
#ifdef ADIOI_MPE_LOGGING
MPE_Log_event( ADIOI_MPE_read_b, 0, NULL );
#endif
/* --BEGIN ERROR HANDLING-- */
if (err_flag != 0) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(err_flag),
"Error in PVFS_sys_read", 0);
goto error_state;
}
/* --END ERROR HANDING-- */
PVFS_Request_free(&mem_req);
PVFS_Request_free(&file_req);
total_bytes_read += resp_io.total_completed;
mem_offset += mem_length;
mem_lengths = 0;
} /* for (i=0; i<n_read_lists; i++) */
/* for file arrays smaller than MAX_ARRAY_SIZE (last read_list call) */
if (extra_blks) {
file_list_count = extra_blks;
if(!i) {
file_offsets[0] = offset;
file_lengths[0] = ADIOI_MIN(st_frd_size, bufsize);
}
for (k=0; k<extra_blks; k++) {
if(i || k) {
file_offsets[k] = disp +
((ADIO_Offset)n_filetypes)*filetype_extent +
flat_file->indices[j];
if (k == (extra_blks - 1)) {
file_lengths[k] = bufsize - (int32_t) mem_lengths
- mem_offset + (int32_t) buf;
}
else file_lengths[k] = flat_file->blocklens[j];
} /* if(i || k) */
mem_lengths += file_lengths[k];
if (j<(flat_file->count - 1)) j++;
else {
j = 0;
n_filetypes++;
}
} /* for (k=0; k<extra_blks; k++) */
err_flag = PVFS_Request_contiguous(mem_length,
PVFS_BYTE, &mem_req);
/* --BEGIN ERROR HANDLING-- */
if (err_flag != 0) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(err_flag),
"Error in PVFS_Request_contiguous (memory)", 0);
goto error_state;
}
/* --END ERROR HANDLING-- */
err_flag = PVFS_Request_hindexed(file_list_count, file_lengths,
file_offsets, PVFS_BYTE, &file_req);
/* --BEGIN ERROR HANDLING-- */
if (err_flag != 0) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(err_flag),
"Error in PVFS_Request_hindexed (file)", 0);
goto error_state;
}
/* --END ERROR HANDLING-- */
/* as above, use 0 for 'offset' when using hindexed file type */
#ifdef ADIOI_MPE_LOGGING
MPE_Log_event( ADIOI_MPE_read_a, 0, NULL );
#endif
err_flag = PVFS_sys_read(pvfs_fs->object_ref, file_req, 0,
(void *)mem_offset, mem_req, &(pvfs_fs->credentials), &resp_io);
#ifdef ADIOI_MPE_LOGGING
MPE_Log_event( ADIOI_MPE_read_b, 0, NULL );
#endif
/* --BEGIN ERROR HANDLING-- */
if (err_flag != 0) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(err_flag),
"Error in PVFS_sys_read", 0);
goto error_state;
}
/* --END ERROR HANDLING-- */
PVFS_Request_free(&mem_req);
PVFS_Request_free(&file_req);
total_bytes_read += resp_io.total_completed;
}
}
else {
/* noncontiguous in memory as well as in file */
ADIOI_Flatten_datatype(datatype);
flat_buf = ADIOI_Flatlist;
while (flat_buf->type != datatype) flat_buf = flat_buf->next;
size_read = 0;
n_filetypes = st_n_filetypes;
frd_size = st_frd_size;
brd_size = flat_buf->blocklens[0];
buf_count = 0;
start_mem_offset = 0;
start_k = k = 0;
start_j = st_index;
max_mem_list = 0;
max_file_list = 0;
/* run through and file max_file_list and max_mem_list so that you
can allocate the file and memory arrays less than MAX_ARRAY_SIZE
if possible */
while (size_read < bufsize) {
k = start_k;
new_buffer_read = 0;
mem_list_count = 0;
while ((mem_list_count < MAX_ARRAY_SIZE) &&
(new_buffer_read < bufsize-size_read)) {
/* find mem_list_count and file_list_count such that both are
less than MAX_ARRAY_SIZE, the sum of their lengths are
equal, and the sum of all the data read and data to be
read in the next immediate read list is less than
bufsize */
if(mem_list_count) {
if((new_buffer_read + flat_buf->blocklens[k] +
size_read) > bufsize) {
end_brd_size = new_buffer_read +
flat_buf->blocklens[k] - (bufsize - size_read);
new_buffer_read = bufsize - size_read;
}
else {
new_buffer_read += flat_buf->blocklens[k];
end_brd_size = flat_buf->blocklens[k];
}
}
else {
if (brd_size > (bufsize - size_read)) {
new_buffer_read = bufsize - size_read;
brd_size = new_buffer_read;
}
else new_buffer_read = brd_size;
}
mem_list_count++;
k = (k + 1)%flat_buf->count;
} /* while ((mem_list_count < MAX_ARRAY_SIZE) &&
(new_buffer_read < bufsize-size_read)) */
j = start_j;
new_file_read = 0;
file_list_count = 0;
while ((file_list_count < MAX_ARRAY_SIZE) &&
(new_file_read < new_buffer_read)) {
if(file_list_count) {
if((new_file_read + flat_file->blocklens[j]) >
new_buffer_read) {
end_frd_size = new_buffer_read - new_file_read;
new_file_read = new_buffer_read;
j--;
}
else {
new_file_read += flat_file->blocklens[j];
end_frd_size = flat_file->blocklens[j];
}
}
else {
if (frd_size > new_buffer_read) {
new_file_read = new_buffer_read;
frd_size = new_file_read;
}
else new_file_read = frd_size;
}
file_list_count++;
if (j < (flat_file->count - 1)) j++;
else j = 0;
k = start_k;
if ((new_file_read < new_buffer_read) &&
(file_list_count == MAX_ARRAY_SIZE)) {
new_buffer_read = 0;
mem_list_count = 0;
while (new_buffer_read < new_file_read) {
if(mem_list_count) {
if((new_buffer_read + flat_buf->blocklens[k]) >
new_file_read) {
end_brd_size = new_file_read - new_buffer_read;
new_buffer_read = new_file_read;
k--;
}
else {
new_buffer_read += flat_buf->blocklens[k];
end_brd_size = flat_buf->blocklens[k];
}
}
else {
new_buffer_read = brd_size;
if (brd_size > (bufsize - size_read)) {
new_buffer_read = bufsize - size_read;
brd_size = new_buffer_read;
}
}
mem_list_count++;
k = (k + 1)%flat_buf->count;
} /* while (new_buffer_read < new_file_read) */
} /* if ((new_file_read < new_buffer_read) && (file_list_count
== MAX_ARRAY_SIZE)) */
} /* while ((mem_list_count < MAX_ARRAY_SIZE) &&
(new_buffer_read < bufsize-size_read)) */
/* fakes filling the readlist arrays of lengths found above */
k = start_k;
j = start_j;
for (i=0; i<mem_list_count; i++) {
if(i) {
if (i == (mem_list_count - 1)) {
if (flat_buf->blocklens[k] == end_brd_size)
brd_size = flat_buf->blocklens[(k+1)%
flat_buf->count];
else {
brd_size = flat_buf->blocklens[k] - end_brd_size;
k--;
buf_count--;
}
}
}
buf_count++;
k = (k + 1)%flat_buf->count;
} /* for (i=0; i<mem_list_count; i++) */
for (i=0; i<file_list_count; i++) {
if (i) {
if (i == (file_list_count - 1)) {
if (flat_file->blocklens[j] == end_frd_size)
frd_size = flat_file->blocklens[(j+1)%
flat_file->count];
else {
frd_size = flat_file->blocklens[j] - end_frd_size;
j--;
}
}
}
if (j < flat_file->count - 1) j++;
else {
j = 0;
n_filetypes++;
}
} /* for (i=0; i<file_list_count; i++) */
size_read += new_buffer_read;
start_k = k;
start_j = j;
if (max_mem_list < mem_list_count)
max_mem_list = mem_list_count;
if (max_file_list < file_list_count)
max_file_list = file_list_count;
} /* while (size_read < bufsize) */
/* one last check before we actually carry out the operation:
* this code has hard-to-fix bugs when a noncontiguous file type has
* such large pieces that the sum of the lengths of the memory type is
* not larger than one of those pieces (and vice versa for large memory
* types and many pices of file types. In these cases, give up and
* fall back to naive reads and writes. The testphdf5 test created a
* type with two very large memory regions and 600 very small file
* regions. The same test also created a type with one very large file
* region and many (700) very small memory regions. both cases caused
* problems for this code */
if ( ( (file_list_count == 1) &&
(new_file_read < flat_file->blocklens[0] ) ) ||
((mem_list_count == 1) &&
(new_buffer_read < flat_buf->blocklens[0]) ) ||
((file_list_count == MAX_ARRAY_SIZE) &&
(new_file_read < flat_buf->blocklens[0]) ) ||
( (mem_list_count == MAX_ARRAY_SIZE) &&
(new_buffer_read < flat_file->blocklens[0])) )
{
ADIOI_Delete_flattened(datatype);
ADIOI_GEN_ReadStrided_naive(fd, buf, count, datatype,
file_ptr_type, initial_off, status, error_code);
return;
}
mem_offsets = (PVFS_size*)ADIOI_Malloc(max_mem_list*sizeof(PVFS_size));
mem_lengths = (int *)ADIOI_Malloc(max_mem_list*sizeof(int));
file_offsets = (int64_t *)ADIOI_Malloc(max_file_list*sizeof(int64_t));
file_lengths = (int32_t *)ADIOI_Malloc(max_file_list*sizeof(int32_t));
size_read = 0;
n_filetypes = st_n_filetypes;
frd_size = st_frd_size;
brd_size = flat_buf->blocklens[0];
buf_count = 0;
start_mem_offset = 0;
start_k = k = 0;
start_j = st_index;
/* this section calculates mem_list_count and file_list_count
and also finds the possibly odd sized last array elements
in new_frd_size and new_brd_size */
while (size_read < bufsize) {
k = start_k;
new_buffer_read = 0;
mem_list_count = 0;
while ((mem_list_count < MAX_ARRAY_SIZE) &&
(new_buffer_read < bufsize-size_read)) {
/* find mem_list_count and file_list_count such that both are
less than MAX_ARRAY_SIZE, the sum of their lengths are
equal, and the sum of all the data read and data to be
read in the next immediate read list is less than
bufsize */
if(mem_list_count) {
if((new_buffer_read + flat_buf->blocklens[k] +
size_read) > bufsize) {
end_brd_size = new_buffer_read +
flat_buf->blocklens[k] - (bufsize - size_read);
new_buffer_read = bufsize - size_read;
}
else {
new_buffer_read += flat_buf->blocklens[k];
end_brd_size = flat_buf->blocklens[k];
}
}
else {
if (brd_size > (bufsize - size_read)) {
new_buffer_read = bufsize - size_read;
brd_size = new_buffer_read;
}
else new_buffer_read = brd_size;
}
mem_list_count++;
k = (k + 1)%flat_buf->count;
} /* while ((mem_list_count < MAX_ARRAY_SIZE) &&
(new_buffer_read < bufsize-size_read)) */
j = start_j;
new_file_read = 0;
file_list_count = 0;
while ((file_list_count < MAX_ARRAY_SIZE) &&
(new_file_read < new_buffer_read)) {
if(file_list_count) {
if((new_file_read + flat_file->blocklens[j]) >
new_buffer_read) {
end_frd_size = new_buffer_read - new_file_read;
new_file_read = new_buffer_read;
j--;
}
else {
new_file_read += flat_file->blocklens[j];
end_frd_size = flat_file->blocklens[j];
}
}
else {
if (frd_size > new_buffer_read) {
new_file_read = new_buffer_read;
frd_size = new_file_read;
}
else new_file_read = frd_size;
}
file_list_count++;
if (j < (flat_file->count - 1)) j++;
else j = 0;
k = start_k;
if ((new_file_read < new_buffer_read) &&
(file_list_count == MAX_ARRAY_SIZE)) {
new_buffer_read = 0;
mem_list_count = 0;
while (new_buffer_read < new_file_read) {
if(mem_list_count) {
if((new_buffer_read + flat_buf->blocklens[k]) >
new_file_read) {
end_brd_size = new_file_read - new_buffer_read;
new_buffer_read = new_file_read;
k--;
}
else {
new_buffer_read += flat_buf->blocklens[k];
end_brd_size = flat_buf->blocklens[k];
}
}
else {
new_buffer_read = brd_size;
if (brd_size > (bufsize - size_read)) {
new_buffer_read = bufsize - size_read;
brd_size = new_buffer_read;
}
}
mem_list_count++;
k = (k + 1)%flat_buf->count;
} /* while (new_buffer_read < new_file_read) */
} /* if ((new_file_read < new_buffer_read) && (file_list_count
== MAX_ARRAY_SIZE)) */
} /* while ((mem_list_count < MAX_ARRAY_SIZE) &&
(new_buffer_read < bufsize-size_read)) */
/* fills the allocated readlist arrays */
k = start_k;
j = start_j;
for (i=0; i<mem_list_count; i++) {
mem_offsets[i] = ((PVFS_size)buf + buftype_extent*
(buf_count/flat_buf->count) +
(int)flat_buf->indices[k]);
if(!i) {
mem_lengths[0] = brd_size;
mem_offsets[0] += flat_buf->blocklens[k] - brd_size;
}
else {
if (i == (mem_list_count - 1)) {
mem_lengths[i] = end_brd_size;
if (flat_buf->blocklens[k] == end_brd_size)
brd_size = flat_buf->blocklens[(k+1)%
flat_buf->count];
else {
brd_size = flat_buf->blocklens[k] - end_brd_size;
k--;
buf_count--;
}
}
else {
mem_lengths[i] = flat_buf->blocklens[k];
}
}
buf_count++;
k = (k + 1)%flat_buf->count;
} /* for (i=0; i<mem_list_count; i++) */
for (i=0; i<file_list_count; i++) {
file_offsets[i] = disp + flat_file->indices[j] +
((ADIO_Offset)n_filetypes) * filetype_extent;
if (!i) {
file_lengths[0] = frd_size;
file_offsets[0] += flat_file->blocklens[j] - frd_size;
}
else {
if (i == (file_list_count - 1)) {
file_lengths[i] = end_frd_size;
if (flat_file->blocklens[j] == end_frd_size)
frd_size = flat_file->blocklens[(j+1)%
flat_file->count];
else {
frd_size = flat_file->blocklens[j] - end_frd_size;
j--;
}
}
else file_lengths[i] = flat_file->blocklens[j];
}
if (j < flat_file->count - 1) j++;
else {
j = 0;
n_filetypes++;
}
} /* for (i=0; i<file_list_count; i++) */
err_flag = PVFS_Request_hindexed(mem_list_count, mem_lengths,
mem_offsets, PVFS_BYTE, &mem_req);
/* --BEGIN ERROR HANDLING-- */
if (err_flag != 0 ) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(err_flag),
"Error in PVFS_Request_hindexed (memory)", 0);
goto error_state;
}
/* -- END ERROR HANDLING-- */
err_flag = PVFS_Request_hindexed(file_list_count, file_lengths,
file_offsets, PVFS_BYTE, &file_req);
/* --BEGIN ERROR HANDLING-- */
if (err_flag != 0) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(err_flag),
"Error in PVFS_Request_hindexed (file)", 0);
goto error_state;
}
/* --END ERROR HANDLING-- */
/* offset will be expressed in memory and file datatypes */
#ifdef ADIOI_MPE_LOGGING
MPE_Log_event( ADIOI_MPE_read_a, 0, NULL );
#endif
err_flag = PVFS_sys_read(pvfs_fs->object_ref, file_req, 0,
PVFS_BOTTOM, mem_req, &(pvfs_fs->credentials), &resp_io);
#ifdef ADIOI_MPE_LOGGING
MPE_Log_event( ADIOI_MPE_read_b, 0, NULL );
#endif
/* --BEGIN ERROR HANDLING-- */
if (err_flag != 0) {
*error_code = MPIO_Err_create_code(MPI_SUCCESS,
MPIR_ERR_RECOVERABLE,
myname, __LINE__,
ADIOI_PVFS2_error_convert(err_flag),
"Error in PVFS_sys_read", 0);
}
/* --END ERROR HANDLING-- */
PVFS_Request_free(&mem_req);
PVFS_Request_free(&file_req);
total_bytes_read += resp_io.total_completed;
size_read += new_buffer_read;
start_k = k;
start_j = j;
} /* while (size_read < bufsize) */
ADIOI_Free(mem_offsets);
ADIOI_Free(mem_lengths);
}
/* Other ADIO routines will convert absolute bytes into counts of datatypes */
/* when incrementing fp_ind, need to also take into account the file type:
* consider an N-element 1-d subarray with a lb and ub: ( |---xxxxx-----|
* if we wrote N elements, offset needs to point at beginning of type, not
* at empty region at offset N+1)
*
* As we discussed on mpich-discuss in may/june 2009, the code below might
* look wierd, but by putting fp_ind at the last byte written, the next
* time we run through the strided code we'll update the fp_ind to the
* right location. */
if (file_ptr_type == ADIO_INDIVIDUAL) {
fd->fp_ind = file_offsets[file_list_count-1]+
file_lengths[file_list_count-1];
}
ADIOI_Free(file_offsets);
ADIOI_Free(file_lengths);
if (err_flag == 0) *error_code = MPI_SUCCESS;
error_state:
fd->fp_sys_posn = -1; /* set it to null. */
#ifdef HAVE_STATUS_SET_BYTES
MPIR_Status_set_bytes(status, datatype, bufsize);
/* This is a temporary way of filling in status. The right way is to
keep track of how much data was actually read and placed in buf
by ADIOI_BUFFERED_READ. */
#endif
if (!buftype_is_contig) ADIOI_Delete_flattened(datatype);
}
int main(int argc, char **argv)
{
PVFS_sysresp_lookup resp_lk;
PVFS_sysresp_create resp_cr;
PVFS_sysresp_io resp_io;
char *filename = NULL;
int ret = -1, io_size = DEFAULT_IO_SIZE;
int *io_buffer = NULL;
int i, errors, buffer_size;
PVFS_fs_id fs_id;
char name[512] = {0};
char *entry_name = NULL;
PVFS_credentials credentials;
PVFS_object_ref parent_refn;
PVFS_sys_attr attr;
PVFS_object_ref pinode_refn;
PVFS_Request file_req;
PVFS_Request mem_req;
void *buffer = NULL;
PVFS_sysresp_getattr resp_getattr;
PVFS_handle *dfile_array = NULL;
if (argc != 2)
{
fprintf(stderr, "Usage: %s <file name>\n", argv[0]);
return (-1);
}
/* create a buffer for running I/O on */
io_buffer = (int *) malloc(io_size * sizeof(int));
if (!io_buffer)
{
return (-1);
}
/* put some data in the buffer so we can verify */
for (i = 0; i < io_size; i++)
{
io_buffer[i] = i;
}
ret = PVFS_util_init_defaults();
if (ret < 0)
{
PVFS_perror("PVFS_util_init_defaults", ret);
return (-1);
}
ret = PVFS_util_get_default_fsid(&fs_id);
if (ret < 0)
{
PVFS_perror("PVFS_util_get_default_fsid", ret);
return (-1);
}
if (argv[1][0] == '/')
{
snprintf(name, 512, "%s", argv[1]);
}
else
{
snprintf(name, 512, "/%s", argv[1]);
}
PVFS_util_gen_credentials(&credentials);
ret = PVFS_sys_lookup(fs_id, name, &credentials,
&resp_lk, PVFS2_LOOKUP_LINK_FOLLOW, NULL);
if (ret == -PVFS_ENOENT)
{
PVFS_sysresp_getparent gp_resp;
printf("IO-TEST: lookup failed; creating new file.\n");
memset(&gp_resp, 0, sizeof(PVFS_sysresp_getparent));
ret = PVFS_sys_getparent(fs_id, name, &credentials, &gp_resp, NULL);
if (ret < 0)
{
PVFS_perror("PVFS_sys_getparent failed", ret);
return ret;
}
attr.owner = credentials.uid;
attr.group = credentials.gid;
attr.perms = PVFS_U_WRITE | PVFS_U_READ;
attr.atime = attr.ctime = attr.mtime = time(NULL);
attr.mask = PVFS_ATTR_SYS_ALL_SETABLE;
parent_refn = gp_resp.parent_ref;
entry_name = rindex(name, (int)'/');
assert(entry_name);
entry_name++;
assert(entry_name);
ret = PVFS_sys_create(entry_name, parent_refn, attr,
&credentials, NULL, &resp_cr, NULL, NULL);
if (ret < 0)
{
PVFS_perror("PVFS_sys_create() failure", ret);
return (-1);
}
pinode_refn.fs_id = fs_id;
pinode_refn.handle = resp_cr.ref.handle;
}
else
{
printf("IO-TEST: lookup succeeded; performing I/O on "
"existing file.\n");
pinode_refn.fs_id = fs_id;
pinode_refn.handle = resp_lk.ref.handle;
}
/**************************************************************
* carry out I/O operation
*/
printf("IO-TEST: performing write on handle: %ld, fs: %d\n",
(long) pinode_refn.handle, (int) pinode_refn.fs_id);
buffer = io_buffer;
buffer_size = io_size * sizeof(int);
/*
file datatype is tiled, so we can get away with a trivial type
here
*/
file_req = PVFS_BYTE;
ret = PVFS_Request_contiguous(io_size * sizeof(int),
PVFS_BYTE, &(mem_req));
if (ret < 0)
{
PVFS_perror("PVFS_request_contiguous failure", ret);
return (-1);
}
ret = PVFS_sys_write(pinode_refn, file_req, 0, buffer, mem_req,
&credentials, &resp_io, NULL);
if (ret < 0)
{
PVFS_perror("PVFS_sys_write failure", ret);
return (-1);
}
printf("IO-TEST: wrote %d bytes.\n", (int) resp_io.total_completed);
/* uncomment and try out the readback-and-verify stuff that follows
* once reading back actually works */
memset(io_buffer, 0, io_size * sizeof(int));
/* verify */
printf("IO-TEST: performing read on handle: %ld, fs: %d\n",
(long) pinode_refn.handle, (int) pinode_refn.fs_id);
ret = PVFS_sys_read(pinode_refn, file_req, 0, buffer, mem_req,
&credentials, &resp_io, NULL);
if (ret < 0)
{
PVFS_perror("PVFS_sys_read failure", ret);
return (-1);
}
printf("IO-TEST: read %d bytes.\n", (int) resp_io.total_completed);
if ((io_size * sizeof(int)) != resp_io.total_completed)
{
fprintf(stderr, "Error: SHORT READ! skipping verification...\n");
}
else
{
errors = 0;
for (i = 0; i < io_size; i++)
{
if (i != io_buffer[i])
{
fprintf(stderr,
"error: element %d differs: should be %d, is %d\n", i,
i, io_buffer[i]);
errors++;
}
}
if (errors != 0)
{
fprintf(stderr, "ERROR: found %d errors\n", errors);
}
else
{
printf("IO-TEST: no errors found.\n");
}
}
/* test out some of the mgmt functionality */
ret = PVFS_sys_getattr(pinode_refn, PVFS_ATTR_SYS_ALL_NOSIZE,
&credentials, &resp_getattr, NULL);
if (ret < 0)
{
PVFS_perror("PVFS_sys_getattr", ret);
return (-1);
}
printf("Target file had %d datafiles:\n", resp_getattr.attr.dfile_count);
dfile_array = (PVFS_handle *) malloc(resp_getattr.attr.dfile_count
* sizeof(PVFS_handle));
if (!dfile_array)
{
perror("malloc");
return (-1);
}
ret = PVFS_mgmt_get_dfile_array(pinode_refn, &credentials,
dfile_array, resp_getattr.attr.dfile_count, NULL);
if (ret < 0)
{
PVFS_perror("PVFS_mgmt_get_dfile_array", ret);
return (-1);
}
for (i = 0; i < resp_getattr.attr.dfile_count; i++)
{
printf("%llu\n", llu(dfile_array[i]));
}
/**************************************************************
* shut down pending interfaces
*/
ret = PVFS_sys_finalize();
if (ret < 0)
{
fprintf(stderr, "Error: PVFS_sys_finalize() failed with errcode = %d\n",
ret);
return (-1);
}
free(filename);
free(io_buffer);
return (0);
}
static int test_permissions(int testcase){
PVFS_credentials credentials;
PVFS_sysresp_lookup resp_lk;
PVFS_Request req_io;
PVFS_Request req_mem;
PVFS_sysresp_io resp_io;
PVFS_offset file_req_offset;
char *filename;
char io_buffer[100];
int fs_id, ret;
file_req_offset = 0;
filename = (char *) malloc(sizeof(char) * 100);
filename = strcpy(filename, "name");
memset(&req_io, 0, sizeof(PVFS_Request));
memset(&req_mem, 0, sizeof(PVFS_Request));
memset(&resp_io, 0, sizeof(PVFS_sysresp_io));
PVFS_util_gen_credentials(&credentials);
memset(&resp_lk, 0, sizeof(PVFS_sysresp_lookup));
if (initialize_sysint() < 0)
{
debug_printf("UNABLE TO INIT THE SYSTEM INTERFACE\n");
return -1;
}
fs_id = pvfs_helper.fs_id;
ret = PVFS_sys_lookup(fs_id, filename, &credentials,
&resp_lk, PVFS2_LOOKUP_LINK_NO_FOLLOW);
if (ret < 0)
{
debug_printf("test_pvfs_datatype_hvector: lookup failed "
"on %s\n", filename);
}
switch (testcase)
{
case 0:
credentials.uid = 555;
break;
case 1:
credentials.gid = 555;
break;
case 2:
ret = PVFS_sys_lookup(
fs_id, "invalid_perms", &credentials,
&resp_lk, PVFS2_LOOKUP_LINK_NO_FOLLOW);
if (ret < 0)
{
debug_printf("test_pvfs_datatype_hvector: lookup failed "
"on %s\n", filename);
}
break;
}
ret = PVFS_sys_read(resp_lk.ref, req_io, file_req_offset,io_buffer, req_mem,
&credentials, &resp_io);
/* finalize_sysint(); */
return ret;
}
static int test_read_sparse_files(void){
PVFS_credentials credentials;
PVFS_sysresp_lookup resp_lk;
PVFS_Request req_io;
PVFS_Request req_mem;
PVFS_sysresp_io resp_io;
PVFS_sysresp_getattr resp;
PVFS_offset file_req_offset = 0;
uint32_t attrmask;
char *filename;
char io_buffer[100];
int fs_id, ret, i;
attrmask = PVFS_ATTR_SYS_ALL_NOSIZE;
filename = (char *) malloc(sizeof(char) * 100);
filename = strcpy(filename, "sparse2");
memset(&req_io, 0, sizeof(PVFS_Request));
memset(&req_mem, 0, sizeof(PVFS_Request));
memset(&resp_io, 0, sizeof(PVFS_sysresp_io));
PVFS_util_gen_credentials(&credentials);
memset(&resp_lk, 0, sizeof(PVFS_sysresp_lookup));
if (initialize_sysint() < 0)
{
debug_printf("UNABLE TO INIT THE SYSTEM INTERFACE\n");
return -1;
}
fs_id = pvfs_helper.fs_id;
ret = PVFS_sys_lookup(fs_id, filename, &credentials,
&resp_lk, PVFS2_LOOKUP_LINK_NO_FOLLOW);
if (ret < 0)
{
debug_printf("test_pvfs_datatype_hvector: lookup failed "
"on %s\n", filename);
}
if((ret = PVFS_sys_getattr(resp_lk.ref, attrmask, &credentials, &resp)) < 0)
return ret;
assert(0);
/* TODO: what's this? we shouldn't edit these fields directly -Phil */
#if 0
switch(testcase)
{
case 0:
req_io->offset = 78000;
break;
case 1:
req_io->offset = 150000;
break;
case 2:
req_io->offset = 330000;
break;
}
#endif
for(i = 0; i < 100; i++)
{
io_buffer[i] = 'a';
}
ret = PVFS_sys_write(resp_lk.ref, req_io, file_req_offset, io_buffer, req_mem,
&credentials, &resp_io);
if(ret < 0){
debug_printf("write failed on %s\n", filename);
}
ret = PVFS_sys_read(resp_lk.ref, req_io, file_req_offset, io_buffer, req_mem,
&credentials, &resp_io);
if(ret < 0){
debug_printf("write failed on %s\n", filename);
}
/* finalize_sysint(); */
for(i = 0; i < 100; i++)
{
if(io_buffer[i] != 0){
return -1;
}
}
/* check for whats in the buffer */
return 0;
}
