DWORD WINAPI InstallerThread(LPVOID data)
{
gGlobalData.success = false;
if (!CreateInstallationDirectory())
goto Error;
ProgressStep();
if (!InstallCopyFiles())
goto Error;
if (gGlobalData.registerAsDefault) {
// need to sublaunch SumatraPDF.exe instead of replicating the code
// because registration uses translated strings
ScopedMem<WCHAR> installedExePath(GetInstalledExePath());
CreateProcessHelper(installedExePath, L"-register-for-pdf");
}
if (gGlobalData.installBrowserPlugin)
InstallBrowserPlugin();
else if (IsBrowserPluginInstalled())
UninstallBrowserPlugin();
if (gGlobalData.installPdfFilter)
InstallPdfFilter();
else if (IsPdfFilterInstalled())
UninstallPdfFilter();
if (gGlobalData.installPdfPreviewer)
InstallPdfPreviewer();
else if (IsPdfPreviewerInstalled())
UninstallPdfPreviewer();
if (!CreateAppShortcut(true) && !CreateAppShortcut(false)) {
NotifyFailed(_TR("Failed to create a shortcut"));
goto Error;
}
// consider installation a success from here on
// (still warn, if we've failed to create the uninstaller, though)
gGlobalData.success = true;
if (!WriteUninstallerRegistryInfo(HKEY_LOCAL_MACHINE) &&
!WriteUninstallerRegistryInfo(HKEY_CURRENT_USER)) {
NotifyFailed(_TR("Failed to write the uninstallation information to the registry"));
}
if (!WriteExtendedFileExtensionInfo(HKEY_LOCAL_MACHINE) &&
!WriteExtendedFileExtensionInfo(HKEY_CURRENT_USER)) {
NotifyFailed(_TR("Failed to write the extended file extension information to the registry"));
}
ProgressStep();
Error:
// TODO: roll back installation on failure (restore previous installation!)
if (gHwndFrame && !gGlobalData.silent) {
Sleep(500); // allow a glimpse of the completed progress bar before hiding it
PostMessage(gHwndFrame, WM_APP_INSTALLATION_FINISHED, 0, 0);
}
return 0;
}
static bool ExtractFiles(lzma::SimpleArchive *archive)
{
lzma::FileInfo *fi;
char *uncompressed;
FileTransaction trans;
for (int i = 0; gPayloadData[i].fileName; i++) {
if (!gPayloadData[i].install)
continue;
int idx = lzma::GetIdxFromName(archive, gPayloadData[i].fileName);
if (-1 == idx) {
NotifyFailed(_TR("Some files to be installed are damaged or missing"));
return false;
}
fi = &archive->files[idx];
uncompressed = lzma::GetFileDataByIdx(archive, idx, nullptr);
if (!uncompressed) {
NotifyFailed(_TR("The installer has been corrupted. Please download it again.\nSorry for the inconvenience!"));
return false;
}
ScopedMem<WCHAR> filePath(str::conv::FromUtf8(fi->name));
ScopedMem<WCHAR> extPath(path::Join(gGlobalData.installDir, filePath));
bool ok = trans.WriteAll(extPath, uncompressed, fi->uncompressedSize);
free(uncompressed);
if (!ok) {
ScopedMem<WCHAR> msg(str::Format(_TR("Couldn't write %s to disk"), filePath));
NotifyFailed(msg);
return false;
}
trans.SetModificationTime(extPath, fi->ftModified);
ProgressStep();
}
return trans.Commit();
}
static bool InstallCopyFiles()
{
// extract all payload files one by one (transacted, if possible)
ZipFile archive(GetOwnPath());
FileTransaction trans;
for (int i = 0; gPayloadData[i].filepath; i++) {
// skip files that are only uninstalled
if (!gPayloadData[i].install)
continue;
ScopedMem<WCHAR> filepathT(str::conv::FromUtf8(gPayloadData[i].filepath));
size_t size;
ScopedMem<char> data(archive.GetFileData(filepathT, &size));
if (!data) {
NotifyFailed(L"Some files to be installed are damaged or missing");
return false;
}
ScopedMem<WCHAR> extpath(path::Join(gGlobalData.installDir, path::GetBaseName(filepathT)));
bool ok = trans.WriteAll(extpath, data, size);
if (!ok) {
ScopedMem<WCHAR> msg(str::Format(L"Couldn't write %s to disk", filepathT));
NotifyFailed(msg);
return false;
}
// set modification time to original value
FILETIME ftModified = archive.GetFileTime(filepathT);
trans.SetModificationTime(extpath, ftModified);
ProgressStep();
}
return trans.Commit();
}
int main(int argc, char *argv[])
{
MyCmdLine(argc, argv);
if (argc < 2)
{
Usage();
return 0;
}
if (opt_version)
{
printf("uchime v" MY_VERSION ".%s\n", SVN_VERSION);
return 0;
}
printf("uchime v" MY_VERSION ".%s\n", SVN_VERSION);
printf("by Robert C. Edgar\n");
printf("http://drive5.com/uchime\n");
printf("This code is donated to the public domain.\n");
printf("\n");
if (!optset_w)
opt_w = 8;
float MinFractId = 0.95f;
if (optset_id)
MinFractId = (float) opt_id;
Log("%8.2f minh\n", opt_minh);
Log("%8.2f xn\n", opt_xn);
Log("%8.2f dn\n", opt_dn);
Log("%8.2f xa\n", opt_xa);
Log("%8.2f mindiv\n", opt_mindiv);
Log("%8u maxp\n", opt_maxp);
if (opt_input == "" && opt_uchime != "")
opt_input = opt_uchime;
if (opt_input == "")
Die("Missing --input");
g_UchimeDeNovo = (opt_db == "");
if (opt_uchimeout != "")
g_fUChime = CreateStdioFile(opt_uchimeout);
if (opt_uchimealns != "")
g_fUChimeAlns = CreateStdioFile(opt_uchimealns);
SeqDB Input;
SeqDB DB;
Input.FromFasta(opt_input);
if (!Input.IsNucleo())
Die("Input contains amino acid sequences");
const unsigned QuerySeqCount = Input.GetSeqCount();
vector<unsigned> Order;
for (unsigned i = 0; i < QuerySeqCount; ++i)
Order.push_back(i);
if (g_UchimeDeNovo)
{
vector<float> Abs;
for (unsigned i = 0; i < QuerySeqCount; ++i)
{
const char *Label = Input.GetLabel(i);
float Ab = GetAbFromLabel(Label);
Abs.push_back(Ab);
}
SortDescending(Abs, Order);
DB.m_IsNucleoSet = true;
DB.m_IsNucleo = true;
}
else
{
DB.FromFasta(opt_db);
if (!DB.IsNucleo())
Die("Database contains amino acid sequences");
}
vector<ChimeHit2> Hits;
unsigned HitCount = 0;
for (unsigned i = 0; i < QuerySeqCount; ++i)
{
unsigned QuerySeqIndex = Order[i];
SeqData QSD;
Input.GetSeqData(QuerySeqIndex, QSD);
float QAb = -1.0;
if (g_UchimeDeNovo)
QAb = GetAbFromLabel(QSD.Label);
ChimeHit2 Hit;
AlnParams &AP = *(AlnParams *) 0;
AlnHeuristics &AH = *(AlnHeuristics *) 0;
HSPFinder &HF = *(HSPFinder *) 0;
bool Found = SearchChime(DB, QSD, QAb, AP, AH, HF, MinFractId, Hit);
if (Found)
++HitCount;
else
{
if (g_UchimeDeNovo)
DB.AddSeq(QSD.Label, QSD.Seq, QSD.L);
}
WriteChimeHit(g_fUChime, Hit);
ProgressStep(i, QuerySeqCount, "%u/%u chimeras found (%.1f%%)", HitCount, i, Pct(HitCount, i+1));
}
Log("\n");
Log("%s: %u/%u chimeras found (%.1f%%)\n",
opt_input.c_str(), HitCount, QuerySeqCount, Pct(HitCount, QuerySeqCount));
CloseStdioFile(g_fUChime);
CloseStdioFile(g_fUChimeAlns);
ProgressExit();
return 0;
}
static bool InstallCopyFiles()
{
FileInfo fileInfos[32];
HRSRC resSrc = FindResource(ghinst, MAKEINTRESOURCE(1), RT_RCDATA);
CrashIf(!resSrc);
HGLOBAL res = LoadResource(NULL, resSrc);
CrashIf(!res);
const uint8_t *data = (const uint8_t*)LockResource(res);
DWORD dataSize = SizeofResource(NULL, resSrc);
// extract all payload files one by one (transacted, if possible)
FileTransaction trans;
const int32_t *idata = (const int32_t*)data;
int32_t fileCount = *idata++;
CrashIf(fileCount >= dimof(fileInfos));
int32_t off = 0;
for (int32_t i = 0; i < fileCount; i++) {
fileInfos[i].off = off;
fileInfos[i].sizeUncompressed = *idata++;
fileInfos[i].sizeCompressed = *idata++;
off += fileInfos[i].sizeCompressed;
data = (const uint8_t*)idata;
fileInfos[i].name = (const char*)data;
while (*data) {
++data;
}
++data;
idata = (const int32_t*)data;
}
uint8_t *dst;
for (int32_t i = 0; i < fileCount; i++) {
ScopedMem<WCHAR> filepathT(str::conv::FromUtf8(fileInfos[i].name));
int32_t srcLen = fileInfos[i].sizeCompressed;
off = fileInfos[i].off;
const uint8_t *src = data + off;
unsigned dstLen;
dst = decodeLZMA((uint8_t*)src, (unsigned)srcLen, &dstLen);
CrashIf(dstLen != (unsigned)fileInfos[i].sizeUncompressed);
ScopedMem<WCHAR> extpath(path::Join(gGlobalData.installDir, path::GetBaseName(filepathT)));
bool ok = trans.WriteAll(extpath, dst, dstLen);
if (!ok) {
ScopedMem<WCHAR> msg(str::Format(_TR("Couldn't write %s to disk"), filepathT));
NotifyFailed(msg);
goto Error;
}
free(dst);
// set modification time to original value
//FILETIME ftModified = archive.GetFileTime(filepathT);
//trans.SetModificationTime(extpath, ftModified);
ProgressStep();
}
UnlockResource(res);
return trans.Commit();
Error:
UnlockResource(res);
return false;
}
////////////////////////////////////////////////////////////////////////////////
// Предварительная обработка
// (07.07.2000) Изначально взято из puma.dll без изменений
// сильно привязана к пуме
// в начале окучиваем выделение компонент
Bool32 PreProcessImage( PRSPreProcessImage Image )
{
Bool32 gbAutoRotate = Image->gbAutoRotate;
puchar *gpRecogDIB = Image->pgpRecogDIB;
Handle hCPAGE = Image->hCPAGE;
const char * glpRecogName = *Image->pglpRecogName;
PCIMAGEBITMAPINFOHEADER info = (PCIMAGEBITMAPINFOHEADER)Image->pinfo;
/////////////////////////////////
Bool32 rc = TRUE;
//char * lpRecogName = NULL;
uint32_t Angle = 0;
hWndTurn = 0;
if(InitPRGTIME())
ProgressStart();
if(!ProgressStep(1,5))
rc = FALSE;
// Andrey 12.11.01
// Проинициализируем контейнер CPAGE
//
if(rc)
{
PAGEINFO PInfo = {0};
GetPageInfo(hCPAGE,&PInfo);
strcpy((char*)PInfo.szImageName, glpRecogName);
PInfo.BitPerPixel = info->biBitCount;
PInfo.DPIX = info->biXPelsPerMeter*254L/10000;
// PInfo.DPIX = PInfo.DPIX < 200 ? 200 : PInfo.DPIX;
PInfo.DPIY = info->biYPelsPerMeter*254L/10000;
// PInfo.DPIY = PInfo.DPIY < 200 ? 200 : PInfo.DPIY;
PInfo.Height = info->biHeight;
PInfo.Width = info->biWidth;
// PInfo.X = 0; Уже установлено
// PInfo.Y = 0;
PInfo.Incline2048 = 0;
PInfo.Page = 1;
PInfo.Angle = Angle;
SetPageInfo(hCPAGE,PInfo);
}
////////////////////////////////////////////////////////
// Выделим компоненты
//
if(!ProgressStep(2,65))
rc = FALSE;
if(rc)
{
if(LDPUMA_Skip(Image->hDebugCancelComponent)/*DPumaSkipComponent()*/)
{
// uchar ori;
PRGTIME prev = StorePRGTIME(65, 85);
rc = ExtractComponents( gbAutoRotate, NULL, (puchar)glpRecogName, Image);
RestorePRGTIME(prev);
/* if(rc && gbAutoRotate)
{
//if(!REXC_GetOrient(&ori))
//if(!REXC_GetOrient(&ori) && db_spec_prj!=SPEC_PRJ_GIP )
if(!RNORM_GetOrient(&ori, *(Image->phCCOM)) && db_spec_prj!=SPEC_PRJ_GIP )
{
SetReturnCode_rstuff(RNORM_GetReturnCode());
rc = FALSE;
}
else
{
//if(ori)
if(ori && !(db_spec_prj==SPEC_PRJ_GIP&&ori==4))
{
uint32_t dwTurn = 0;
switch(ori)
{
case 1:
Angle = 270;
dwTurn = RIMAGE_TURN_270;
break;
case 2:
Angle = 90;
dwTurn = RIMAGE_TURN_90;
break;
case 3:
Angle = 180;
dwTurn = RIMAGE_TURN_180;
break;
}
if( LDPUMA_Skip(Image->hDebugCancelTurn) /*umaSkipTurn()*/ /*)
{
if(!RIMAGE_Turn((puchar)glpRecogName,(puchar)PUMA_IMAGE_TURN,dwTurn,0))
{
SetReturnCode_rstuff_rstuff(RIMAGE_GetReturnCode());
rc = FALSE;
}
else
{
if(!CIMAGE_ReadDIB((puchar)PUMA_IMAGE_TURN,(Handle*)gpRecogDIB,TRUE))
{
SetReturnCode_rstuff_rstuff(CIMAGE_GetReturnCode());
rc = FALSE;
}
else
{
//
// удалим общий контейнер
//
glpRecogName = PUMA_IMAGE_TURN;
hWndTurn = LDPUMA_CreateWindow(PUMA_IMAGE_TURN,(*gpRecogDIB));
PRGTIME prev = StorePRGTIME(85, 100);
rc = ExtractComponents( FALSE, NULL, (puchar)glpRecogName, Image);
PAGEINFO info = {0};
GetPageInfo(hCPAGE,&info);
info.Images|=IMAGE_TURN;
// strcpy((char*)info.szImageName,PUMA_IMAGE_TURN);
SetPageInfo(hCPAGE,info);
RestorePRGTIME(prev);
}
}
}
}
}
}*/
//проверим наличие разрешения и попытаемся определить по компонентам, если его нет
checkResolution(*(Image->phCCOM), hCPAGE);
if(!ProgressStep(2,100))
rc = FALSE;
}
else
LDPUMA_Console("Пропущен этап выделения компонент.\n");
}
//
// Переинициализируем контейнер CPAGE
//
if(rc)
{
PAGEINFO PInfo = {0};
GetPageInfo(hCPAGE,&PInfo);
strcpy((char*)PInfo.szImageName, glpRecogName);
PInfo.BitPerPixel = info->biBitCount;
// PInfo.DPIX = info->biXPelsPerMeter*254L/10000;
PInfo.DPIX = PInfo.DPIX < 200 ? 200 : PInfo.DPIX;
// PInfo.DPIY = info->biYPelsPerMeter*254L/10000;
PInfo.DPIY = PInfo.DPIY < 200 ? 200 : PInfo.DPIY;
PInfo.Height = info->biHeight;
PInfo.Width = info->biWidth;
// PInfo.X = 0; Уже установлено
// PInfo.Y = 0;
PInfo.Incline2048 = 0;
PInfo.Page = 1;
PInfo.Angle = Angle;
SetPageInfo(hCPAGE,PInfo);
}
if(DonePRGTIME())
ProgressFinish();
return rc;
}
