Protein load_protein(const boost::filesystem::path & protein_path,
const boost::optional<boost::filesystem::path> & secondary_structure_path) {
LOGI << "loading protein file";
ProteinFileFactory pf;
std::shared_ptr<ProteinFile> protein_file(pf.create(protein_path));
SecondaryStructureFileFactory ssf;
if (secondary_structure_path) {
LOGI << "loading secondary structure file";
std::shared_ptr<SecondaryStructureFile> secondary_structure_file(
ssf.create(*secondary_structure_path));
return Protein(protein_file, secondary_structure_file);
} else {
return Protein(protein_file);
}
}
object copy_gestator() {
if(gestator)
return object(Protein(*gestator));
else
return object();
}
// Gestation and incubator
list copy_incubator() {
py::list ret;
BOOST_FOREACH(const Protein& p, incubator)
ret.append(Protein(p));
return ret;
}
