int Orient( char *filename, int setflags, int orientation )
{
PBITMAP tiff;
tiff = ReadTiff( filename, 0 );
if ( !tiff )
{
fprintf( stderr, "Can't read %s\n", filename );
return 1;
}
if ( tiff->sampleformat!=BITMAP_UINT8
&& tiff->sampleformat!=BITMAP_UINT16
&& tiff->sampleformat!=BITMAP_IEEE )
{
fprintf( stderr,
"TIFF file %s is not a \"r\", \"rgb\", \"rgba\" or IEEE image\n",
filename );
goto Error;
}
if (setflags)
{
tiff->orientation = orientation;
}
else
{
tiff = OrientBitmap( tiff, orientation );
}
if (WriteTiff( tiff, filename ))
{
fprintf( stderr, "Can't write file: \"%s\"\n", filename );
goto Error;
}
DestroyBitmap( tiff );
return 0;
Error:
DestroyBitmap( tiff );
return 1;
}
int main(int argc, char **argv)
{
PBITMAP tiff;
if ( argc < 3 || (argc > 1 && argv[1][0]=='-') )
{
/* User tried to specify an option, so just print help text. */
printf( "tiff2pix tiff_filename X_filename\n" \
" tiff_filename TIFF file to read from.\n" \
" X_filename X windows bitmap file.\n" );
return 1;
}
/* Check that the input file name doesn't match the output file name. */
if (!strcmp(argv[1],argv[2]))
{
fprintf( stderr, "Filenames can not refer to the same file: \"%s\".\n",
argv[1] );
return 1;
}
tiff = ReadTiff( argv[1], 0 );
if (!tiff)
{
fprintf( stderr, "Can't read %s\n", argv[1] );
return 1;
}
tiff = OrientBitmap( tiff, BITMAP_TOPLEFT );
if (tiff->nsamples!=1 && tiff->bitspersample!=1)
{
fprintf( stderr, "Requires data to be 1 bit per pixel.\n" );
return 1;
}
if (WriteX( tiff, argv[2] ))
{
fprintf( stderr, "Can't write %s\n", argv[2] );
return 1;
}
DestroyBitmap( tiff );
return 0;
}
int ReadImage(const char *filename,
std::vector<unsigned char> * ptr,
int * w,
int * h,
int * depth){
const Format f = GetFormat(filename);
switch (f) {
case Pnm:
return ReadPnm(filename, ptr, w, h, depth);
case Png:
return ReadPng(filename, ptr, w, h, depth);
case Jpg:
return ReadJpg(filename, ptr, w, h, depth);
case Tiff:
return ReadTiff(filename, ptr, w, h, depth);
default:
return 0;
};
}
int main(int argc, char **argv)
{
PBITMAP tiff;
uint32 n;
uint8 *p8;
uint16 *p16;
auto uint32 i,j,x,y;
if ( argc < 2 || (argc > 1 && argv[1][0]=='-') )
{
/* User tried to specify an option, so just print help text. */
printf( "tiffinvert tiff_filename1 ...\n" \
" tiff_filename1 ... TIFF file(s) to overwrite with an\n" \
" an inverted version of their image.\n" );
return 1;
}
for ( i=1; i<argc; i++ )
{
tiff = ReadTiff( argv[i], 0 );
if ( !tiff )
{
fprintf( stderr, "Can't read %s\n", argv[i] );
return 1;
}
if ( tiff->sampleformat!=BITMAP_UINT8
&& tiff->sampleformat!=BITMAP_UINT16 )
{
fprintf( stderr,
"TIFF file %s is not an \"r\", \"rgb\" or \"rgba\" image\n",
argv[i] );
goto Skip;
}
if ( tiff->sampleformat==BITMAP_UINT8 )
{
n = tiff->yres * tiff->rowbytes;
p8 = tiff->pbits;
for ( j=0; j<n; j++ )
*p8++ = 0xff - *p8;
}
else /* tiff->sampleformat==BITMAP_UINT16 */
{
n = tiff->xres * tiff->nsamples;
p16 = (uint16*)tiff->pbits;
for ( y=0; y<tiff->yres; y++ )
for ( x=0; x<n; x++ )
*p16++ = 0xffff - *p16;
}
if (WriteTiff( tiff, argv[i] ))
{
fprintf( stderr, "Can't write file: \"%s\"\n", argv[i] );
goto Error;
}
Skip:
DestroyBitmap( tiff );
}
return 0;
Error:
DestroyBitmap( tiff );
return 1;
}
Nrrd* OIFReader::Convert(int t, int c, bool get_max)
{
Nrrd *data = 0;
int sl_num = 0;
if (t>=0 && t<m_time_num &&
c>=0 && c<m_chan_num &&
m_slice_num>0 &&
m_x_size>0 &&
m_y_size>0)
{
//allocate memory for nrrd
unsigned long long mem_size = (unsigned long long)m_x_size*
(unsigned long long)m_y_size*(unsigned long long)m_slice_num;
unsigned short *val = new (std::nothrow) unsigned short[mem_size];
//read the channel
ChannelInfo *cinfo = &m_oif_info[t].dataset[c];
int i;
for (i=0; i<int(cinfo->size()); i++)
{
char *pbyData = 0;
wstring file_name = (*cinfo)[i];
//open file
ifstream is;
#ifdef _WIN32
is.open(file_name.c_str(), ios::binary);
#else
is.open(ws2s(file_name).c_str(), ios::binary);
#endif
if (is.is_open())
{
is.seekg(0, ios::end);
size_t size = is.tellg();
pbyData = new char[size];
is.seekg(0, ios::beg);
is.read(pbyData, size);
is.close();
//read
ReadTiff(pbyData, val, i);
//increase
sl_num++;
}
if (pbyData)
delete []pbyData;
}
//create nrrd
if (val && sl_num == m_slice_num)
{
//ok
data = nrrdNew();
nrrdWrap(data, val, nrrdTypeUShort, 3, (size_t)m_x_size, (size_t)m_y_size, (size_t)m_slice_num);
nrrdAxisInfoSet(data, nrrdAxisInfoSpacing, m_xspc, m_yspc, m_zspc);
nrrdAxisInfoSet(data, nrrdAxisInfoMax, m_xspc*m_x_size, m_yspc*m_y_size, m_zspc*m_slice_num);
nrrdAxisInfoSet(data, nrrdAxisInfoMin, 0.0, 0.0, 0.0);
nrrdAxisInfoSet(data, nrrdAxisInfoSize, (size_t)m_x_size, (size_t)m_y_size, (size_t)m_slice_num);
}
else
{
//something is wrong
if (val)
delete []val;
}
}
if (m_max_value > 0.0)
m_scalar_scale = 65535.0 / m_max_value;
m_cur_time = t;
return data;
}
int main(int argc, char **argv)
{
int forced;
int filetype;
int i;
PBITMAP pBmp;
pid_t pid;
if ( argc==1 )
{
PrintHelp();
return 1;
}
filetype = UNKNOWN_FILETYPE;
forced = 0;
i = 1;
while ( i < argc )
{
if ( argv[i][0]=='-' )
{
if (!strcmp(&argv[i][1],"pix"))
{
filetype = PIX_FILETYPE;
forced = 1;
}
else if (!strcmp(&argv[i][1],"tiff") || !strcmp(&argv[i][1],"tif"))
{
filetype = TIFF_FILETYPE;
forced = 1;
}
else if (!strcmp(&argv[i][1],"tga"))
{
filetype = TGA_FILETYPE;
forced = 1;
}
else if (!strcmp(&argv[i][1],"iff"))
{
filetype = IFF_FILETYPE;
forced = 1;
}
else if (!strcmp(&argv[i][1],"auto"))
{
filetype = UNKNOWN_FILETYPE;
forced = 0;
}
else
{
PrintHelp();
return 1;
}
}
else
{
if ( !filetype )
{
filetype = GetFileType( argv[i] );
}
if ( filetype )
{
switch ( filetype )
{
case PIX_FILETYPE:
pBmp = ReadPix( argv[i] );
break;
case TIFF_FILETYPE:
pBmp = ReadTiff( argv[i], READTIFF_CONVERT16TO8 );
break;
case TGA_FILETYPE:
pBmp = ReadTga( argv[i] );
break;
case IFF_FILETYPE:
pBmp = ReadIff( argv[i], READIFF_CONVERT16TO8 );
break;
default:
exit(1);
}
pid = fork();
if ( pid < 0 )
{
printf( "Error: fork()\n" );
return 1;
}
else if ( pid==0 )
{
DisplayBitmap( pBmp, argv[i] );
exit(1);
}
if (!forced)
{
filetype = UNKNOWN_FILETYPE;
}
}
else
{
printf( "ERROR: Unknown file type: %s.\n", argv[i] );
PrintHelp();
}
}
i++;
}
return 0;
}
Nrrd *OIBReader::Convert(int t, int c, bool get_max)
{
Nrrd *data = 0;
int sl_num = 0;
if (t>=0 && t<m_time_num &&
c>=0 && c<m_chan_num &&
m_slice_num > 0 &&
m_x_size > 0 &&
m_y_size > 0)
{
unsigned char *pbyData = 0;
wstring path_name = m_type==0?m_path_name:m_oib_info[t].filename;
//storage
POLE::Storage pStg(ws2s(path_name).c_str());
//open
if (pStg.open()) {
//allocate memory for nrrd
unsigned long long mem_size = (unsigned long long)m_x_size*
(unsigned long long)m_y_size*(unsigned long long)m_slice_num;
unsigned short *val = new (std::nothrow) unsigned short[mem_size];
//enumerate
std::list<std::string> entries =
pStg.entries();
for(std::list<std::string>::iterator it = entries.begin();
it != entries.end(); ++it) {
if (pStg.isDirectory(*it)) {
std::list<std::string> streams = pStg.GetAllStreams(*it);
size_t num = 0;
ChannelInfo *cinfo = &m_oib_info[t].dataset[c];
for(std::list<std::string>::iterator its = streams.begin();
its != streams.end(); ++its) {
if (num >= cinfo->size()) break;
//fix the stream name
std::string str_name = ws2s((*cinfo)[num].stream_name);
std::string name = (*it) + std::string("/") + str_name;
POLE::Stream pStm(&pStg,name);
//open
if (!pStm.eof() && !pStm.fail())
{
//get stream size
size_t sz = pStm.size();
//allocate
pbyData = new unsigned char[sz];
if (!pbyData)
return NULL;
//read
if (pStm.read(pbyData,sz)) {
//copy tiff to val
ReadTiff(pbyData, val, num);
//increase
sl_num++;
}
}
//release
if (pbyData)
delete[] pbyData;
num++;
}
}
}
//create nrrd
if (val && sl_num == m_slice_num)
{
//ok
data = nrrdNew();
nrrdWrap(data, val, nrrdTypeUShort, 3, (size_t)m_x_size, (size_t)m_y_size,
(size_t)m_slice_num);
nrrdAxisInfoSet(data, nrrdAxisInfoSpacing, m_xspc, m_yspc, m_zspc);
nrrdAxisInfoSet(data, nrrdAxisInfoMax, m_xspc*m_x_size, m_yspc*m_y_size,
m_zspc*m_slice_num);
nrrdAxisInfoSet(data, nrrdAxisInfoMin, 0.0, 0.0, 0.0);
nrrdAxisInfoSet(data, nrrdAxisInfoSize, (size_t)m_x_size,
(size_t)m_y_size, (size_t)m_slice_num);
} else {
//something is wrong
if (val)
delete []val;
}
//release
pStg.close();
}
}
if (m_max_value > 0.0)
m_scalar_scale = 65535.0 / m_max_value;
m_cur_time = t;
return data;
}
