Staff::Staff(int n) : Object("staff-"), AttCommon()
{
RegisterAttClass(ATT_COMMON);
Reset();
SetN(n);
}
void CMSHit::RecordMatches(CLadderContainer& LadderContainer,
int iMod,
CMSPeak *Peaks,
unsigned ModMask,
CMod ModList[],
int NumMod,
const char *PepStart,
int Searchctermproduct,
int Searchb1,
int TheoreticalMassIn
)
{
// create hitlist. note that this is deleted in the assignment operator
CreateHitInfo();
// need to calculate the number of mods from mask and NumMod(?)
NumModInfo = CountMods(ModMask,NumMod);
ModInfo.reset(new CMSModInfo[NumModInfo]);
SetTheoreticalMass() = TheoreticalMassIn;
// increment thru hithist
int iHitInfo(0);
EMSPeakListTypes Which = Peaks->GetWhich(GetCharge());
SetM() = 0;
SetSum() = 0;
// scan thru each ladder
int ChargeLimit(0);
if (GetCharge() < Peaks->GetConsiderMult())
ChargeLimit = 1;
TLadderMap::iterator Iter;
LadderContainer.Begin(Iter, ChargeLimit, ChargeLimit);
while(Iter != LadderContainer.SetLadderMap().end()) {
RecordMatchesScan(*((*(Iter->second))[iMod]),iHitInfo, Peaks, Which, Searchb1, Searchctermproduct);
LadderContainer.Next(Iter, ChargeLimit, ChargeLimit);
}
SetN() = (Peaks->GetPeakLists())[Which]->GetNum();
// need to make function to save the info in ModInfo
RecordModInfo(ModMask,
ModList,
NumMod,
PepStart
);
}
Layer::Layer(int n)
: Object("layer-"), DrawingListInterface(), ObjectListInterface(), AttNInteger(), AttTyped(), AttVisibility()
{
RegisterAttClass(ATT_NINTEGER);
RegisterAttClass(ATT_TYPED);
RegisterAttClass(ATT_VISIBILITY);
// owned pointers need to be set to NULL;
m_staffDefClef = NULL;
m_staffDefKeySig = NULL;
m_staffDefMensur = NULL;
m_staffDefMeterSig = NULL;
m_cautionStaffDefClef = NULL;
m_cautionStaffDefKeySig = NULL;
m_cautionStaffDefMensur = NULL;
m_cautionStaffDefMeterSig = NULL;
Reset();
SetN(n);
}
