END_TEST
START_TEST (test_Species_setSpatialSizeUnits)
{
Species_t *s =
Species_create(2, 1);
const char *units = "volume";
Species_setSpatialSizeUnits(s, units);
fail_unless( !strcmp(Species_getSpatialSizeUnits(s), units) );
fail_unless( Species_isSetSpatialSizeUnits(s) );
if (Species_getSpatialSizeUnits(s) == units)
{
fail("Species_setSpatialSizeUnits(...) did not make a copy of string.");
}
/* Reflexive case (pathological) */
Species_setSpatialSizeUnits(s, Species_getSpatialSizeUnits(s));
fail_unless( !strcmp(Species_getSpatialSizeUnits(s), units) );
Species_setSpatialSizeUnits(s, NULL);
fail_unless( !Species_isSetSpatialSizeUnits(s) );
if (Species_getSpatialSizeUnits(s) != NULL)
{
fail("Species_setSpatialSizeUnits(S, NULL) did not clear string.");
}
Species_free(s);
}
END_TEST
START_TEST (test_Species_setSpatialSizeUnits1)
{
int i = Species_setSpatialSizeUnits(C, "mm");
fail_unless( i == LIBSBML_UNEXPECTED_ATTRIBUTE );
fail_unless( !Species_isSetSpatialSizeUnits(C) );
}
END_TEST
START_TEST (test_Species_setSpatialSizeUnits4)
{
Species_t *c =
Species_create(2, 2);
int i = Species_setSpatialSizeUnits(c, NULL);
fail_unless( i == LIBSBML_OPERATION_SUCCESS );
fail_unless( !Species_isSetSpatialSizeUnits(c) );
Species_free(c);
}
END_TEST
START_TEST (test_Species_setSpatialSizeUnits2)
{
Species_t *c =
Species_create(2, 2);
int i = Species_setSpatialSizeUnits(c, "1cell");
fail_unless( i == LIBSBML_INVALID_ATTRIBUTE_VALUE );
fail_unless( !Species_isSetSpatialSizeUnits(c) );
Species_free(c);
}
END_TEST
START_TEST (test_Species_setSpatialSizeUnits3)
{
Species_t *c =
Species_create(2, 2);
int i = Species_setSpatialSizeUnits(c, "mole");
fail_unless( i == LIBSBML_OPERATION_SUCCESS );
fail_unless( !strcmp(Species_getSpatialSizeUnits(c), "mole") );
fail_unless( Species_isSetSpatialSizeUnits(c) );
Species_free(c);
}
/*
setValues: the user can enter a species name and
change its initial condition (amount or concentration)
*/
static void setValues(Model_t *m) {
char *species;
char *newIA;
char *newIC;
Species_t *s;
printf("Please enter the id of the species to change: ");
species = get_line(stdin);
species = util_trim(species);
if ( (s = Model_getSpeciesById(m,species) ) ) {
printf("\n");
printf("Id: %s\n", Species_getId(s));
if ( Species_isSetName(s) ) {
printf("Name: %s\n", Species_getName(s));
}
if ( Species_isSetInitialAmount(s) ) {
printf("Initial Amount: %g", Species_getInitialAmount(s));
}
else if (Species_isSetInitialConcentration(s) ) {
printf("Initial Concentration: %g", Species_getInitialConcentration(s));
}
if ( Species_getHasOnlySubstanceUnits(s) ) {
if ( Species_isSetSubstanceUnits(s) ) {
printf("%s ", Species_getSubstanceUnits(s));
}
} else {
if ( Species_isSetSubstanceUnits(s) ) {
printf("%s ", Species_getSubstanceUnits(s));
}
if ( Species_isSetSpatialSizeUnits(s) ) {
printf("%s%s", "/", Species_getSpatialSizeUnits(s));
}
}
if ( Species_getHasOnlySubstanceUnits(s) ) {
printf(" (has only substance units)");
}
printf("\n");
if ( Species_isSetCharge(s) ) {
printf("Charge: %-10d", Species_getCharge(s));
}
printf("\n");
printf("%s ", Species_getBoundaryCondition(s) ?
"Species is a Boundary\n" : "\n");
printf("%s ", Species_getConstant(s) ?
"Species is set constant" : "\n");
printf("\n");
if ( Species_isSetInitialAmount(s) ) {
printf("Please enter new initial Amount: ");
newIA = get_line(stdin);
newIA = util_trim(newIA);
Species_setInitialAmount(s, (float) atof(newIA));
}
else if ( Species_isSetInitialConcentration(s) ) {
printf("Please enter new initial Concentration: ");
newIC = get_line(stdin);
newIC = util_trim(newIC);
Species_setInitialConcentration(s, (float) atof(newIC));
}
}
else {
printf("%s not found.\n", species);
}
}
