//Load a trained Svm and Prob. models
void SvmTheoreticalSpectrumGeneratorSet::load(String filename)
{
if (!File::readable(filename)) // look in OPENMS_DATA_PATH
{
filename = File::find(filename);
}
TextFile file(filename);
Param sim_param = SvmTheoreticalSpectrumGenerator().getDefaults();
for (Size line_num = 1; line_num < file.size(); ++line_num)
{
String line(file[line_num]);
std::vector<String> spl;
line.split(":", spl);
Int precursor_charge = spl[0].toInt();
if (spl.size() != 2 || precursor_charge < 1)
{
throw Exception::ParseError(__FILE__, __LINE__, __PRETTY_FUNCTION__, file[line_num], " Invalid entry in SVM model File");
}
//load the model into the map
sim_param.setValue("model_file_name", File::path(filename) + "/" + spl[1]);
simulators_[precursor_charge].setParameters(sim_param);
simulators_[precursor_charge].load();
}
}
//Load a trained Svm and Prob. models
void SvmTheoreticalSpectrumGeneratorSet::load(String filename)
{
if (!File::readable(filename)) // look in OPENMS_DATA_PATH
{
filename = File::find(filename);
}
Param sim_param = SvmTheoreticalSpectrumGenerator().getDefaults();
TextFile file(filename);
TextFile::ConstIterator it = file.begin();
if (it == file.end()) return; // no data to load
// skip header line
++it;
// process content
for (; it != file.end(); ++it)
{
std::vector<String> spl;
it->split(":", spl);
Int precursor_charge = spl[0].toInt();
if (spl.size() != 2 || precursor_charge < 1)
{
throw Exception::ParseError(__FILE__, __LINE__, __PRETTY_FUNCTION__, *it, " Invalid entry in SVM model File");
}
//load the model into the map
sim_param.setValue("model_file_name", File::path(filename) + "/" + spl[1]);
simulators_[precursor_charge].setParameters(sim_param);
simulators_[precursor_charge].load();
}
}
