static void bc_inputrec(const t_commrec *cr, t_inputrec *inputrec) { gmx_bool bAlloc = TRUE; int i; block_bc(cr, *inputrec); bc_grpopts(cr, &(inputrec->opts)); /* even if efep is efepNO, we need to initialize to make sure that * n_lambda is set to zero */ snew_bc(cr, inputrec->fepvals, 1); if (inputrec->efep != efepNO || inputrec->bSimTemp) { bc_fepvals(cr, inputrec->fepvals); } /* need to initialize this as well because of data checked for in the logic */ snew_bc(cr, inputrec->expandedvals, 1); if (inputrec->bExpanded) { bc_expandedvals(cr, inputrec->expandedvals, inputrec->fepvals->n_lambda); } snew_bc(cr, inputrec->simtempvals, 1); if (inputrec->bSimTemp) { bc_simtempvals(cr, inputrec->simtempvals, inputrec->fepvals->n_lambda); } if (inputrec->ePull != epullNO) { snew_bc(cr, inputrec->pull, 1); bc_pull(cr, inputrec->pull); } if (inputrec->bRot) { snew_bc(cr, inputrec->rot, 1); bc_rot(cr, inputrec->rot); } if (inputrec->bIMD) { snew_bc(cr, inputrec->imd, 1); bc_imd(cr, inputrec->imd); } for (i = 0; (i < DIM); i++) { bc_cosines(cr, &(inputrec->ex[i])); bc_cosines(cr, &(inputrec->et[i])); } if (inputrec->eSwapCoords != eswapNO) { snew_bc(cr, inputrec->swap, 1); bc_swapions(cr, inputrec->swap); } if (inputrec->bAdress) { snew_bc(cr, inputrec->adress, 1); bc_adress(cr, inputrec->adress); } }
static void bc_inputrec(const t_commrec *cr, t_inputrec *inputrec) { /* The statement below is dangerous. It overwrites all structures in inputrec. * If something is added to inputrec, like efield it will need to be * treated here. */ gmx::IInputRecExtension *eptr = inputrec->efield; block_bc(cr, *inputrec); inputrec->efield = eptr; bc_grpopts(cr, &(inputrec->opts)); /* even if efep is efepNO, we need to initialize to make sure that * n_lambda is set to zero */ snew_bc(cr, inputrec->fepvals, 1); if (inputrec->efep != efepNO || inputrec->bSimTemp) { bc_fepvals(cr, inputrec->fepvals); } /* need to initialize this as well because of data checked for in the logic */ snew_bc(cr, inputrec->expandedvals, 1); if (inputrec->bExpanded) { bc_expandedvals(cr, inputrec->expandedvals, inputrec->fepvals->n_lambda); } snew_bc(cr, inputrec->simtempvals, 1); if (inputrec->bSimTemp) { bc_simtempvals(cr, inputrec->simtempvals, inputrec->fepvals->n_lambda); } if (inputrec->bPull) { snew_bc(cr, inputrec->pull, 1); bc_pull(cr, inputrec->pull); } if (inputrec->bRot) { snew_bc(cr, inputrec->rot, 1); bc_rot(cr, inputrec->rot); } if (inputrec->bIMD) { snew_bc(cr, inputrec->imd, 1); bc_imd(cr, inputrec->imd); } inputrec->efield->broadCast(cr); if (inputrec->eSwapCoords != eswapNO) { snew_bc(cr, inputrec->swap, 1); bc_swapions(cr, inputrec->swap); } }
static void bc_inputrec(const t_commrec *cr,t_inputrec *inputrec) { bool bAlloc=TRUE; int i; block_bc(cr,*inputrec); snew_bc(cr,inputrec->flambda,inputrec->n_flambda); nblock_bc(cr,inputrec->n_flambda,inputrec->flambda); bc_grpopts(cr,&(inputrec->opts)); if (inputrec->ePull != epullNO) { snew_bc(cr,inputrec->pull,1); bc_pull(cr,inputrec->pull); } for(i=0; (i<DIM); i++) { bc_cosines(cr,&(inputrec->ex[i])); bc_cosines(cr,&(inputrec->et[i])); } }