void countInversions(int* A,int left,int right)
{
int mid;
if(left < right)
{
mid = (left+right)/2;
countInversions(A,left,mid);
countInversions(A,mid+1,right);
countSplit(A,left,mid,right);
}
return;
}
//----------------------------------------------------------------------------------
void Simulation::measurePopulation(MeasurementsTable& table)
{
if (mErrorCode!=EcNoError) return;
checkPopSize("void Simulation::measurePopulation()");
const unsigned int popSize = SoilMiteBase::getPopSize();
std::vector<double> bodySizeTable(popSize);
std::vector<double> reservesTable(popSize);
std::vector<double> chanceToDieTable(popSize);
std::vector<double> foodIntakeTable(popSize);
std::vector<double> allocationTable(popSize);
std::vector<double> fractionBiomassPerOffspringInitialTable(popSize);
std::vector<double> fractionBiomassPerOffspringTable(popSize);
std::vector<bool> isAdultTable(popSize);
const double splitValue = SoilMiteBase::getBodySizeAdult();
for (unsigned int i=0; i<popSize; ++i)
{
bodySizeTable[i] = mPop[i]->getBodySize();
reservesTable[i] = mPop[i]->getReserves();
foodIntakeTable[i] = mPop[i]->getFeedRate();
chanceToDieTable[i] = mPop[i]->getChanceToDie();
allocationTable[i] = mPop[i]->getAllocation();
fractionBiomassPerOffspringInitialTable[i] = mPop[i]->getFractionBiomassPerOffspringInitial();
fractionBiomassPerOffspringTable[i] = mPop[i]->getFractionBiomassPerOffspring();
isAdultTable[i] = ( bodySizeTable[i]>splitValue ? true : false);
assert(allocationTable[i]>=0.0 && allocationTable[i]<=1.0);
assert(fractionBiomassPerOffspringInitialTable[i]>=0.0 && fractionBiomassPerOffspringInitialTable[i]<=1.0);
assert(fractionBiomassPerOffspringTable[i]>=0.0 && fractionBiomassPerOffspringTable[i]<=1.0);
assert(mPop[i]->getChanceToDie()>=0.0 && mPop[i]->getChanceToDie()<=1.0);
}
double meanBodySize, stdDevBodySize;
SafeMeanAndStdDev(bodySizeTable, meanBodySize, stdDevBodySize);
table.mMeanBodySize.push_back(meanBodySize);
table.mStdDevBodySize.push_back(stdDevBodySize);
double meanReserves, stdDevReserves;
SafeMeanAndStdDev(reservesTable, meanReserves, stdDevReserves);
table.mMeanReserves.push_back(meanReserves);
table.mStdDevReserves.push_back(stdDevReserves);
double meanFoodIntake, stdDevFoodIntake;
SafeMeanAndStdDev(foodIntakeTable, meanFoodIntake, stdDevFoodIntake);
table.mMeanFoodIntake.push_back(meanFoodIntake);
table.mStdDevFoodIntake.push_back(stdDevFoodIntake);
double meanChanceToDie, stdDevChanceToDie;
SafeMeanAndStdDev(chanceToDieTable, meanChanceToDie, stdDevChanceToDie);
table.mMeanChanceToDie.push_back(meanChanceToDie);
table.mStdDevChanceToDie.push_back(stdDevChanceToDie);
//Plus
int popSizeJuvenileInt, popSizeAdultInt;
countSplit(splitValue, bodySizeTable, popSizeJuvenileInt, popSizeAdultInt);
double popSizeJuvenile = static_cast<double>(popSizeJuvenileInt);
double popSizeAdult = static_cast<double>(popSizeAdultInt);
table.mPopSizeJuvenile.push_back(popSizeJuvenile);
table.mPopSizeAdult.push_back(popSizeAdult);
double meanBodySizeJuvenile, meanBodySizeAdult;
SafeMeanSplit(splitValue,bodySizeTable, meanBodySizeJuvenile, meanBodySizeAdult);
assert(meanBodySizeJuvenile<=splitValue);
assert(meanBodySizeAdult>=splitValue || meanBodySizeAdult==0.0);
table.mMeanBodySizeJuvenile.push_back(meanBodySizeJuvenile);
table.mMeanBodySizeAdult.push_back(meanBodySizeAdult);
double meanReservesJuvenile, meanReservesAdult;
SafeMeanSplit(isAdultTable,reservesTable, meanReservesJuvenile, meanReservesAdult);
table.mMeanReservesJuvenile.push_back(meanReservesJuvenile);
table.mMeanReservesAdult.push_back(meanReservesAdult);
double meanChanceToDieJuvenile, meanChanceToDieAdult;
SafeMeanSplit(isAdultTable,chanceToDieTable, meanChanceToDieJuvenile, meanChanceToDieAdult);
table.mMeanChanceToDieJuvenile.push_back(meanChanceToDieJuvenile);
table.mMeanChanceToDieAdult.push_back(meanChanceToDieAdult);
double meanFoodIntakeJuvenile, meanFoodIntakeAdult;
SafeMeanSplit(isAdultTable,foodIntakeTable, meanFoodIntakeJuvenile, meanFoodIntakeAdult);
table.mMeanFoodIntakeJuvenile.push_back(meanFoodIntakeJuvenile);
table.mMeanFoodIntakeAdult.push_back(meanFoodIntakeAdult);
//Plus plus
double meanAllocationJuvenile, meanAllocationAdult;
SafeMeanSplit(isAdultTable,allocationTable, meanAllocationJuvenile, meanAllocationAdult);
table.mMeanAllocation.push_back(meanAllocationAdult);
double meanFractionBiomassPerOffspringInitialJuvenile, meanFractionBiomassPerOffspringInitialAdult;
SafeMeanSplit(isAdultTable,fractionBiomassPerOffspringInitialTable, meanFractionBiomassPerOffspringInitialJuvenile, meanFractionBiomassPerOffspringInitialAdult);
table.mMeanFractionBiomassPerOffspringInitial.push_back(meanFractionBiomassPerOffspringInitialAdult);
double meanFractionBiomassPerOffspringJuvenile, meanFractionBiomassPerOffspringAdult;
SafeMeanSplit(isAdultTable,fractionBiomassPerOffspringTable, meanFractionBiomassPerOffspringJuvenile, meanFractionBiomassPerOffspringAdult);
table.mMeanFractionBiomassPerOffspring.push_back(meanFractionBiomassPerOffspringAdult);
}
