main(){
/*getHammingDistance() test cases:*/
getHammingDistance("AACCTT","GGCCTT"); //return 2
getHammingDistance("TCGGA","AAAAG"); //returns 5
getHammingDistance("A","AG"); //error message prompt returns 0
/*countSubstrPattern() test cases:*/
countSubstrPattern("AATATATAGG","GG");// returns 1
countSubstrPattern("AATATATAGG","ATA");// returns 3
countSubstrPattern("AATATATAGG","ACTGACTGACTG");// returns 0
/*isValidString() test cases:*/
isValidString("AAGGCTATGC","ACGT");//returns 1 / true
isValidString("AAGGCTATGa","ACGT");// returns 0 / false
isValidString("ACGT","ACGT");// returns 1 / true
isValidString("ACGT101_","ACGT");// returns 0 / false
isValidString("091212345","0123456789");// returns 1 / true
/*getSkew() test cases:*/
getSkew("GGCCAC", 1);// returns 1
getSkew("GGCCAC", 2);// returns 2
getSkew("GGCCAC", 3);// returns 1
getSkew("GGCCAC", 4);// returns 0
getSkew("GGCCAC", 5);// returns 0
/*getMaxSkewN() test cases:*/
getMaxSkewN("GGCCAC", 1);// returns 1
getMaxSkewN("GGCCAC", 2);// returns 2
getMaxSkewN("GGCCAC", 3);// returns 2
getMaxSkewN("GGCCAC", 4);// returns 2
getMaxSkewN("GGCCAC", 5);// returns 2
/*getMinSkewN() test cases:*/
getMinSkewN("GGCCAC", 1);// returns 1
getMinSkewN("GGCCAC", 2);// returns 1
getMinSkewN("GGCCAC", 3);// returns 1
getMinSkewN("GGCCAC", 4);// returns 0
getMinSkewN("GGCCAC", 5);// returns 0
}
void countSubstrPatternTest(char *str1, char *str2, int expectedResult) {
int substrCount = countSubstrPattern(str1, str2);
printf("countSubstrPattern(\"%s\", \"%s\") ", str1, str2);
if(substrCount == expectedResult) {
printf("PASSED\n");
}
else {
printf("FAILED (Expected %i, got %i.)\n", expectedResult, substrCount);
errorCount++;
}
}
int main(){
int choice = 7, result, n;
char *str1, *str2;
while(choice != 0){ //while user has not chosen to exit the program
printMenu(&choice); //calls function printMenu
str1 = (char *)malloc(100*sizeof(char));
str2 = (char *)malloc(100*sizeof(char));
switch(choice){
case 1:
printf("\n*****************************************\n");
printf("*\t Get Hamming Distance\t\t*\n");
printf("*****************************************\n");
printf("\nEnter string 1: ");
scanf("%s", str1);
printf("Enter string 2: ");
scanf("%s", str2);
//return value of function getHammingDistance stored in result
result = getHammingDistance(str1, str2);
if(result == 0){ //if the strings have unequal length
printf("\nError! Strings have unequal length!\n");
}else{ //if the strings have equal length
printf("\nHamming Distance: %d\n", result);
}
break;
case 2:
printf("\n*****************************************\n");
printf("*\t Count Substring Pattern\t*\n");
printf("*****************************************\n");
printf("\nEnter original string: ");
scanf("%s", str1);
printf("Enter pattern: ");
scanf("%s", str2);
//return value of function countSubstrPattern stored in result
result = countSubstrPattern(str1, str2);
printf("\nNumber of occurence of pattern in orginal: %d\n", result);
break;
case 3:
printf("\n*****************************************\n");
printf("*\t Is String Valid\t\t*\n");
printf("*****************************************\n");
printf("\nEnter alphabet: ");
scanf("%s", str1);
printf("Enter string: ");
scanf("%s", str2);
//return value of function isValidString stored in result
result = isValidString(str2, str1);
if(result == 1){
printf("\nString is valid.\n");
}else{
printf("\nString is not valid.\n");
}
break;
case 4:
printf("\n*****************************************\n");
printf("*\t\tGet Skew\t\t*\n");
printf("*****************************************\n");
printf("\nEnter genome string: ");
scanf("%s", str1);
printf("Enter number: ");
scanf("%d", &n);
if(n > (strlen(str1)+1) || n <= 0){
printf("\nError! Number must be within string length!\n");
}else{
//return value of function getSkew stored in result
result = getSkew(str1, n);
printf("\nNumber of G-C: %d\n", result);
}
break;
case 5:
printf("\n*****************************************\n");
printf("*\t Get Maximum Skew of N\t\t*\n");
printf("*****************************************\n");
printf("\nEnter genome string: ");
scanf("%s", str1);
printf("Enter number: ");
scanf("%d", &n);
if(n > (strlen(str1)+1) || n <= 0){
printf("\nError! Number must be within string length!\n");
}else{
//return value of function getMaxSkewN stored in result
result = getMaxSkewN(str1, n);
printf("\nMaximum Skew: %d\n", result);
}
break;
case 6:
printf("\n*****************************************\n");
printf("*\t Get Minimum Skew of N\t\t*\n");
printf("*****************************************\n");
printf("\nEnter genome string: ");
scanf("%s", str1);
printf("Enter number: ");
scanf("%d", &n);
if(n > (strlen(str1)+1) || n <= 0){
printf("\nError! Number must be within string length!\n");
}else{
//return value of function getMinSkewN stored in result
result = getMinSkewN(str1, n);
printf("\nMinimum Skew: %d\n", result);
}
break;
case 0:
free(str1);
free(str2);
printf("\nProgram Terminated...\n");
break;
default:
printf("\nInvalid input!\n");
break;
}
}
}
main(){
int x;
printf("getHammingDistance\n");
x = getHammingDistance("AACCTT","GGCCTT");
printf("%d\n",x );
x = getHammingDistance("TCGGA","AAAAG");
printf("%d\n",x );
x = getHammingDistance("A","AG");
printf("%d\n",x );
printf("countSubstrPattern\n");
x = countSubstrPattern("AATATATAGG","GG");
printf("%d\n",x);
x = countSubstrPattern("AATATATAGG","ATA");
printf("%d\n",x);
x = countSubstrPattern("AATATATAGG","ACTGACTGACTG");
printf("%d\n",x);
printf("isValidString\n");
x = isValidString("AAGGCTATGC","ACGT");
printf("%d\n",x);
x = isValidString("AAGGCTATGa","ACGT");
printf("%d\n",x);
x = isValidString("ACGT","ACGT");
printf("%d\n",x);
x = isValidString("ACGT101_","ACGT");
printf("%d\n",x);
x = isValidString("091212345","0123456789");
printf("%d\n",x);
printf("getSkew\n");
x = getSkew("GGCCAC", 1);
printf("%d\n",x );
x = getSkew("GGCCAC", 2);
printf("%d\n",x );
x = getSkew("GGCCAC", 3);
printf("%d\n",x );
x = getSkew("GGCCAC", 4);
printf("%d\n",x );
x = getSkew("GGCCAC", 5);
printf("%d\n",x );
printf("getMaxSkewN\n");
x = getMaxSkewN("GGCCAC", 1);
printf("%d\n",x );
x = getMaxSkewN("GGCCAC", 2);
printf("%d\n",x );
x = getMaxSkewN("GGCCAC", 3);
printf("%d\n",x );
x = getMaxSkewN("GGCCAC", 4);
printf("%d\n",x );
x = getMaxSkewN("GGCCAC", 5);
printf("%d\n",x );
printf("getMinSkewN\n");
x = getMinSkewN("GGCCAC", 1);
printf("%d\n",x );
x = getMinSkewN("GGCCAC", 2);
printf("%d\n",x );
x = getMinSkewN("GGCCAC", 3);
printf("%d\n",x );
x = getMinSkewN("GGCCAC", 4);
printf("%d\n",x );
x = getMinSkewN("GGCCAC", 5);
printf("%d\n",x );
}