//******************************************************************************
static void tmr_handler(void)
{
uint32_t term_cnt32 = US_TIMER->term_cnt32;
US_TIMER->term_cnt32 = 0xFFFFFFFF; // reset to max value to prevent further interrupts
US_TIMER->intfl = (MXC_F_TMR_INTFL_TIMER0 | MXC_F_TMR_INTFL_TIMER1); // clear interrupt
NVIC_ClearPendingIRQ(US_TIMER_IRQn);
inc_current_cnt(term_cnt32);
if (event_passed(current_cnt + US_TIMER->count32, event_cnt )) {
// the timestamp has expired
event_cnt = 0xFFFFFFFFFFFFFFFFULL; // reset to max value
us_ticker_irq_handler();
} else {
uint64_t diff = event_diff(current_cnt, event_cnt);
if (diff < (uint64_t)0xFFFFFFFF) {
// the event occurs before the next overflow
US_TIMER->term_cnt32 = diff;
// Since the timer keeps counting after the terminal value is reached, it is possible that the new
// terminal value is in the past.
if (US_TIMER->term_cnt32 < US_TIMER->count32) {
// the timestamp has expired
US_TIMER->term_cnt32 = 0xFFFFFFFF; // reset to max value to prevent further interrupts
US_TIMER->intfl = (MXC_F_TMR_INTFL_TIMER0 | MXC_F_TMR_INTFL_TIMER1); // clear interrupt
NVIC_ClearPendingIRQ(US_TIMER_IRQn);
event_cnt = 0xFFFFFFFFFFFFFFFFULL; // reset to max value
us_ticker_irq_handler();
}
}
}
}
//******************************************************************************
void us_ticker_set_interrupt(timestamp_t timestamp)
{
// Note: interrupts are disabled before this function is called.
US_TIMER->ctrl &= ~MXC_F_TMR_CTRL_ENABLE0; // disable timer
if (US_TIMER->intfl) {
US_TIMER->intfl = (MXC_F_TMR_INTFL_TIMER0 | MXC_F_TMR_INTFL_TIMER1); // clear interrupt
NVIC_ClearPendingIRQ(US_TIMER_IRQn);
inc_current_cnt(US_TIMER->term_cnt32);
}
// add and reset the current count value
inc_current_cnt(US_TIMER->count32);
US_TIMER->count32 = 0;
// add the number of cycles that the timer is disabled here for
inc_current_cnt(200);
event_cnt = (uint64_t)timestamp * ticks_per_us;
// Check to see if the event has already passed
if (!event_passed(current_cnt, event_cnt)) {
uint64_t diff = event_diff(current_cnt, event_cnt);
if (diff < (uint64_t)0xFFFFFFFF) {
// the event occurs before the next overflow
US_TIMER->term_cnt32 = diff;
} else {
// the event occurs after the next overflow
US_TIMER->term_cnt32 = 0xFFFFFFFF; // set to max
}
} else {
// the requested timestamp occurs in the past
// set the timer up to immediately expire
US_TIMER->term_cnt32 = 1;
}
US_TIMER->ctrl |= MXC_F_TMR_CTRL_ENABLE0; // enable timer
}
void run_gp(multipop *mpop, int startgen, event *t_eval, event *t_breed,
int startfromcheckpoint) {
char *param;
int gen;
int maxgen;
int exch_gen;
int i, j;
int checkinterval;
char *checkfileformat;
char *checkfilename = NULL;
event start, end, diff;
int term = 0;
termination_override =0;
int stt_interval;
int bestn;
if (!startfromcheckpoint) {
/* get the number of top individuals to track. */
bestn = atoi(get_parameter("output.bestn"));
if (bestn < 1) {
error( E_WARNING,
"\"output.bestn\" must be at least 1. defaulting to 1.");
bestn = 1;
}
/* allocate statistics for overall run. */
run_stats = (popstats *) MALLOC((mpop->size + 1) * sizeof(popstats));
for (i = 0; i < mpop->size + 1; ++i) {
run_stats[i].bestn = bestn;
run_stats[i].size = -1;
}
/* initialize the linked list of saved individuals. */
saved_head = (saved_ind *) MALLOC(sizeof(saved_ind));
saved_head->ind = NULL;
saved_head->refcount = 0;
saved_head->next = NULL;
saved_tail = saved_head;
}
/* get the maximum number of generations. */
param = get_parameter("max_generations");
if (param == NULL)
error( E_FATAL_ERROR, "no value specified for \"max_generations\".");
maxgen = atoi(param);
if (maxgen <= 0)
error( E_FATAL_ERROR, "\"max_generations\" must be greater than zero.");
/* get the interval for subpopulation exchanges, if there is more than
one subpopulation. */
if (mpop->size > 1) {
param = get_parameter("multiple.exch_gen");
if (param == NULL)
error( E_FATAL_ERROR,
"no value specified for \"multiple.exch_gen\".");
exch_gen = atoi(param);
if (exch_gen <= 0)
error( E_FATAL_ERROR,
"\"multiple.exch_gen\" must be greater than zero.");
}
/* get the interval for doing checkpointing. */
param = get_parameter("checkpoint.interval");
if (param == NULL)
/* checkpointing disabled. */
checkinterval = -1;
else
checkinterval = atoi(param);
/* get the format string for the checkpoint filenames. */
checkfileformat = get_parameter("checkpoint.filename");
checkfilename = (char *) MALLOC(strlen(checkfileformat) + 50);
/* get the interval for writing information to the .stt file. */
stt_interval = atoi(get_parameter("output.stt_interval"));
if (stt_interval < 1)
error( E_FATAL_ERROR,
"\"output.stt_interval\" must be greater than zero.");
oputs( OUT_SYS, 10, "\n\nstarting evolution.\n");
/* print out how often we'll be doing checkpointing. */
if (checkinterval > 0)
oprintf( OUT_SYS, 20,
"checkpointing will be done every %d generations and "
"after the last generation.\n", checkinterval);
else if (checkinterval == 0)
oprintf( OUT_SYS, 20, "checkpointing will be done only after the last "
"generation.\n");
else
oprintf( OUT_SYS, 20, "no checkpointing will be done.\n");
/* the big loop. */
for (gen = startgen; gen < maxgen && !term; ++gen) {
oprintf( OUT_SYS, 20, "=== generation %d.\n", gen);
generation_No = gen;
/* unless this is the first generation after loading a checkpoint
file... */
if (!(startfromcheckpoint && gen == startgen)) {
/* evaluate the population. */
event_mark(&start);
for (i = 0; i < mpop->size; ++i) { //generation_No = i;
evaluate_pop(mpop->pop[i]);
}
event_mark(&end);
event_diff(&diff, &start, &end);
#ifdef TIMING_AVAILABLE
oprintf( OUT_SYS, 40, " evaluation complete. (%s)\n",
event_string(&diff));
#else
oprintf ( OUT_SYS, 40, " evaluation complete.\n" );
#endif
event_accum(t_eval, &diff);
/* calculate and print statistics. returns 1 if user termination
criterion was met, 0 otherwise. */
term = generation_information(gen, mpop, stt_interval,
run_stats[0].bestn);
if (term) {
//oprintf( OUT_SYS, 30, "user termination criterion met.\n");
/*extern float *optimal_in_generation;
extern int *optimal_index_in_generation;
extern int same_optimal_count;
int i;
for (i = 0; i < generationSIZE; i++) {
if ((int) optimal_in_generation[i] == -1) {
printf("tried to Break");
break;
}
printf("Index: %d ERR : %f -Index %d Same : %i\n", i,
optimal_in_generation[i],
optimal_index_in_generation[i], same_optimal_count);
}*/
}
flush_output_streams();
}
/** write a checkpoint file if checkinterval is non-negative and:
we've reached the last generation, or
the user termination criterion has been met, or
we've reached the specified checkpoint interval. **/
if (checkinterval >= 0
&& (gen == maxgen || term
|| (checkinterval > 0 && gen > startgen
&& (gen % checkinterval) == 0))) {
sprintf(checkfilename, checkfileformat, gen);
write_checkpoint(gen, mpop, checkfilename);
}
/** if this is not the last generation and the user criterion hasn't
been met, then do breeding. **/
if (gen != maxgen && !term) {
/** exchange subpops if it's time. **/
if (mpop->size > 1 && gen && (gen % exch_gen) == 0) {
exchange_subpopulations(mpop);
oprintf( OUT_SYS, 10, " subpopulation exchange complete.\n");
}
/* breed the new population. */
event_mark(&start);
for (i = 0; i < mpop->size; ++i)
mpop->pop[i] = change_population(mpop->pop[i], mpop->bpt[i]);
event_mark(&end);
event_diff(&diff, &start, &end);
/* call the application end-of-breeding callback. */
app_end_of_breeding(gen, mpop);
#ifdef TIMING_AVAILABLE
oprintf( OUT_SYS, 30, " breeding complete. (%s)\n",
event_string(&diff));
#else
oprintf ( OUT_SYS, 30, " breeding complete.\n" );
#endif
event_accum(t_breed, &diff);
}
/* free unused ERCs. */
ephem_const_gc();
flush_output_streams();
}
/** free up a lot of stuff before returning. */
if (checkfilename)
FREE(checkfilename);
ephem_const_gc();
for (i = 0; i < mpop->size + 1; ++i) {
for (j = 0; j < run_stats[i].bestn; ++j)
--run_stats[i].best[j]->refcount;
FREE(run_stats[i].best);
}
FREE(run_stats);
saved_individual_gc();
FREE(saved_head);
}