void MTD_FLASHMEM MultipartFormDataProcessor::handle_DecodingHeaders(char c) {
static char const EOH[4] = {0x0D, 0x0A, 0x0D, 0x0A};
if (c == EOH[substate]) {
++substate;
if (substate == 2) {
// useful if this is not an EOH to separate headers
headers->append(0x0D, 1);
} else if (substate == 4) {
// end of headers
headers->append(0, 1); // add string terminating zero
// look for "name" parameter
CharChunksIterator keyBegin;
extractParameter(FSTR(" name="), headers->getIterator(), &keyBegin, &nameBegin, &nameEnd);
// look for "filename" parameter
CharChunksIterator filenameBegin, filenameEnd;
if (extractParameter(FSTR(" filename="), headers->getIterator(), &keyBegin, &filenameBegin, &filenameEnd)) {
//// this is a file
// add "filename" to form fields
filenameBegin = getFilename(filenameBegin,
filenameEnd); // some browsers send a full path instead of a simple file name (IE)
formfields->add(keyBegin + 1, keyBegin + 9, filenameBegin, filenameEnd);
// extract Content-Type parameter
CharChunksIterator contentTypeBegin, contentTypeEnd;
if (extractParameter(FSTR("Content-Type:"), filenameEnd, &keyBegin, &contentTypeBegin, &contentTypeEnd)) {
// add "Content-Type" to form fields
formfields->add(keyBegin, keyBegin + 12, contentTypeBegin, contentTypeEnd);
// create file
file.create(APtr<char>(t_strdup(filenameBegin, filenameEnd)).get(),
APtr<char>(t_strdup(contentTypeBegin, contentTypeEnd)).get());
state = GettingFile;
} else {
// missing content-type, cannot get as file!
state = GettingValue;
}
} else {
//// this is a normal field
valueStorage = chunksFactory.add();
state = GettingValue;
}
substate = 0;
}
} else {
// add to headers buffer
headers->append(c, HEADERS_CHUNK_SIZE);
substate = 0;
}
}
void getCommandLineParams(t_Params *ptParams,int argc,char *argv[])
{
char *szTemp = NULL;
char *pcError = NULL;
/*get parameter file name*/
ptParams->szDatFile = extractParameter(argc,argv,DAT_FILE,ALWAYS);
if(ptParams->szDatFile == NULL)
goto error;
/*get output filestub*/
ptParams->szTreeFile = extractParameter(argc,argv,TREE_FILE, ALWAYS);
if(ptParams->szTreeFile == NULL)
goto error;
ptParams->szMapFile = extractParameter(argc,argv,MAP_FILE, ALWAYS);
if(ptParams->szMapFile == NULL)
goto error;
szTemp = extractParameter(argc,argv,SPLIT,ALWAYS);
if(szTemp != NULL){
ptParams->nSplit = strtol(szTemp,&pcError,10);
if(*pcError != '\0'){
goto error;
}
}
else{
goto error;
}
szTemp = extractParameter(argc,argv,MIN_SIZE,ALWAYS);
if(szTemp != NULL){
ptParams->nMinSize = strtol(szTemp,&pcError,10);
if(*pcError != '\0'){
goto error;
}
}
else{
goto error;
}
return;
error:
writeUsage(stdout);
exit(EXIT_FAILURE);
}
void getCommandLineParams(t_Params *ptParams,int argc,char *argv[])
{
char *szTemp = NULL;
char *cError = NULL;
/*get parameter file name*/
ptParams->szInputFile = extractParameter(argc,argv, INPUT_FILE,ALWAYS);
if(ptParams->szInputFile == NULL)
goto error;
if(szTemp = extractParameter(argc,argv, LOOKUP_FILE_FLAG, OPTION)){
ptParams->szLookUpFile = szTemp;
}
else{
ptParams->szLookUpFile = getenv("SEQ_LOOKUP_FILE");
if(ptParams->szLookUpFile == NULL){
ptParams->szLookUpFile = LOOKUP_FILE;
}
}
/*identifiers*/
szTemp = extractParameter(argc, argv, IDENT, OPTION);
if(szTemp != NULL){
ptParams->bIdent = TRUE;
}
else{
ptParams->bIdent = FALSE;
}
szTemp = extractParameter(argc, argv, PHYLIP, OPTION);
if(szTemp != NULL){
ptParams->bPhylip = TRUE;
}
else{
ptParams->bPhylip = FALSE;
}
return;
error:
writeUsage(stdout);
exit(EXIT_FAILURE);
}
void getCommandLineParams(t_Params *ptParams,int argc,char *argv[])
{
char *szTemp = NULL;
char *cError = NULL;
/*get parameter file name*/
ptParams->szDataFile = extractParameter(argc,argv, DATA_FILE, ALWAYS);
if(ptParams->szDataFile == NULL)
goto error;
if(extractParameter(argc,argv, NO_INDEX, OPTION)){
ptParams->bNoIndex = TRUE;
}
else{
ptParams->bNoIndex = FALSE;
}
if(szTemp = extractParameter(argc,argv, LOOKUP_FILE_FLAG, OPTION)){
ptParams->szLookUpFile = szTemp;
}
else{
ptParams->szLookUpFile = getenv("PYRO_LOOKUP_FILE");
if(ptParams->szLookUpFile == NULL){
ptParams->szLookUpFile = LOOKUP_FILE;
}
}
ptParams->szOutFileStub = extractParameter(argc,argv, OUT_FILE_STUB, ALWAYS);
if(ptParams->szOutFileStub == NULL)
goto error;
return;
error:
writeUsage(stdout);
exit(EXIT_FAILURE);
}
void getCommandLineParams(t_Params *ptParams,int argc,char *argv[])
{
char *szTemp = NULL;
char *cError = NULL;
/*get parameter file name*/
ptParams->szSeqInputFile = extractParameter(argc,argv, SEQ_INPUT_FILE,ALWAYS);
if(ptParams->szSeqInputFile == NULL)
goto error;
/*get parameter file name*/
ptParams->szRefInputFile = extractParameter(argc,argv, REF_INPUT_FILE,OPTION);
if(ptParams->szRefInputFile == NULL){
ptParams->szRefInputFile = ptParams->szSeqInputFile;
}
szTemp = extractParameter(argc,argv,SKEW,OPTION);
if(szTemp != NULL){
ptParams->nSkew = strtol(szTemp,&cError,10);
if(*cError!='\0'){
goto error;
}
}
else{
ptParams->nSkew = DEFAULT_SKEW;
}
if(extractParameter(argc,argv,USE_BALANCE,OPTION)){
ptParams->bImbalance = FALSE;
}
else{
ptParams->bImbalance = TRUE;
}
szTemp = extractParameter(argc,argv,CLASSIFY,OPTION);
if(szTemp != NULL){
char *szTok = strtok(szTemp, DELIM2);
ptParams->dAlpha = strtod(szTok,&cError);
if(*cError!='\0'){
goto error;
}
szTok = strtok(NULL, DELIM2);
ptParams->dBeta = strtod(szTok,&cError);
if(*cError!='\0'){
goto error;
}
}
else{
if(ptParams->bImbalance == FALSE){
ptParams->dAlpha = DEFAULT_ALPHA_1;
ptParams->dBeta = DEFAULT_BETA_1;
}
else{
ptParams->dAlpha = DEFAULT_ALPHA_2;
ptParams->dBeta = DEFAULT_BETA_2;
}
}
if(extractParameter(argc,argv,OUTPUT_ALIGNMENTS,OPTION)){
ptParams->bOutputAlignments = TRUE;
}
else{
ptParams->bOutputAlignments = FALSE;
}
if(szTemp = extractParameter(argc,argv, LOOKUP_FILE_FLAG, OPTION)){
ptParams->szLookUpFile = szTemp;
}
else{
ptParams->szLookUpFile = getenv("SEQ_LOOKUP_FILE");
if(ptParams->szLookUpFile == NULL){
ptParams->szLookUpFile = LOOKUP_FILE;
}
}
return;
error:
writeUsage(stdout);
exit(EXIT_FAILURE);
}
