static void rOutputFill(struct fill *fill, FILE *f)
/* Recursively output fill and it's gaps. */
{
struct gap *gap;
struct chain *chain = fill->chain;
int subSize;
double subScore;
subchainInfo(chain, fill->start, fill->end, rOutQ, &subSize, &subScore);
if (subScore >= minScore && subSize >= minFill)
{
++rOutDepth;
if (rOutQ)
fillOut(f, fill, fill->chain->tName, rOutDepth, subSize, subScore);
else
fillOut(f, fill, fill->chain->qName, rOutDepth, subSize, subScore);
for (gap = fill->gapList; gap != NULL; gap = gap->next)
rOutputGap(fill, gap, f);
--rOutDepth;
}
}
int main(int argc, char *argv[])
{
int t;
#define INPUTLEN 256
char input[INPUTLEN];
char cmd[INPUTLEN];
int ins[MaxInputs];
int outs[MaxOutputs];
int index;
/* check -addr 0x378 */
for (t = 1; t < argc; t++)
{
if (!strcmp(argv[t], "-addr"))
{
if (t == argc - 1)
{
fprintf(stderr, "no address specified\n");
exit(1);
}
else if (1 != sscanf(argv[t+1], "%li", &NC200_IO_ADDRESS))
{
fprintf(stderr, "bad address specified: %s\n", argv[t+1]);
exit(1);
}
else
{
t++; /* step over address */
continue;
}
}
else
{
fprintf(stderr, "syntax: %s -addr <io address>\n", argv[0]);
exit(1);
}
}
if (-1 == nc200DioInit(0))
{
fprintf(stderr, "can't init\n");
exit(1);
}
while (! feof(stdin))
{
printf("nc200> ");
fflush(stdout);
if (NULL == fgets(input, INPUTLEN, stdin))
{
/* EOF */
break;
}
if (1 != sscanf(input, "%s", cmd))
{
/* blank line-- print input */
fillIn(ins);
printIn(ins);
continue;
}
if (! strcmp(cmd, "help") ||
! strcmp(cmd, "?"))
{
printf("help/? print this help\n");
printf("s <#> set bit #\n");
printf("c <#> clear bit #\n");
printf("k check outputs\n");
printf("ENTER print inputs\n");
printf("q quit\n");
}
else if (! strcmp(cmd, "s"))
{
/* set */
if (1 != sscanf(input, "%*s %d", &index))
{
printf("bad input: %s\n", input);
continue;
}
if (0 != nc200DioWrite(index, 1))
{
printf("index out of range\n");
}
}
else if (! strcmp(cmd, "c"))
{
/* set */
if (1 != sscanf(input, "%*s %d", &index))
{
printf("bad input: %s\n", input);
continue;
}
if (0 != nc200DioWrite(index, 0))
{
printf("index out of range\n");
}
}
else if (! strcmp(cmd, "k"))
{
/* check outputs */
fillOut(outs);
printOut(outs);
}
else if (! strcmp(cmd, "q"))
{
break;
}
else
{
printf("?\n");
}
}
nc200DioQuit();
exit(0);
}