void free_objects(void)
{
if( gwdb != NULL )
gwdb = free_GeneWiseDB(gwdb);
if( cdb != NULL )
cdb = free_cDNADB(cdb);
if( sdb != NULL )
sdb = free_SequenceDB(sdb);
if( cdna != NULL )
cdna = free_cDNA(cdna);
if( pro != NULL )
pro = free_Protein(pro);
if( tsm != NULL )
tsm = free_ThreeStateModel(tsm);
if( tsmdb != NULL )
tsmdb = free_ThreeStateDB(tsmdb);
if( gws != NULL )
gws = free_GeneWiseScore(gws);
if( hs != NULL )
hs = free_Hscore(hs);
if( cm != NULL )
cm = free_CodonMapper(cm);
if( cps != NULL )
cps = free_cDNAParser(cps);
}
/* Function: free_GenePhaseScore(obj)
*
* Descrip: Free Function: removes the memory held by obj
* Will chain up to owned members and clear all lists
*
*
* Arg: obj [UNKN ] Object that is free'd [GenePhaseScore *]
*
* Return [UNKN ] Undocumented return value [GenePhaseScore *]
*
*/
GenePhaseScore * free_GenePhaseScore(GenePhaseScore * obj)
{
int return_early = 0;
int i;
if( obj == NULL) {
warn("Attempting to free a NULL pointer to a GenePhaseScore obj. Should be trappable");
return NULL;
}
#ifdef PTHREAD
assert(pthread_mutex_lock(&(obj->dynamite_mutex)) == 0);
#endif
if( obj->dynamite_hard_link > 1) {
return_early = 1;
obj->dynamite_hard_link--;
}
#ifdef PTHREAD
assert(pthread_mutex_unlock(&(obj->dynamite_mutex)) == 0);
#endif
if( return_early == 1)
return NULL;
if( obj->phase != NULL) {
for(i=0;i<obj->len;i++) {
if( obj->phase[i] != NULL)
free_GenePhaseSegScore(obj->phase[i]);
}
ckfree(obj->phase);
}
if( obj->gws != NULL)
free_GeneWiseScore(obj->gws);
ckfree(obj);
return NULL;
}