void gbAlignDataDbLoad(struct sqlConnection *conn)
/* load the alignments into the database */
{
gbGeneTblSetCommit(geneTblSet, conn);
gbAlignTblSetCommit(alignTblSet, conn);
gbGeneTblSetFree(&geneTblSet);
gbAlignTblSetFree(&alignTblSet);
}
void gbMetaDataUpdateChgGenes(struct sqlConnection *conn,
struct gbSelect *select,
struct gbStatusTbl* statusTbl,
char *tmpDir)
/* update gene tables where annotations have changed but sequence
* has not changes and is not being reloaded */
{
if (partitionMayHaveGeneTbls(select))
{
struct gbGeneTblSet *ggts = gbGeneTblSetNew(tmpDir);
struct gbStatus* status;
for (status = statusTbl->metaChgList; status != NULL; status = status->next)
{
if (inGeneTbls(status) && !(status->stateChg & GB_SEQ_CHG))
updateGeneEntries(conn, ggts, status, select->hasVersion); // ext chg or rebuild derived
}
gbGeneTblSetCommit(ggts, conn);
gbGeneTblSetFree(&ggts);
}
}
