// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void EnsembleInfoReader::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setDataContainerName(reader->readString("DataContainerName", getDataContainerName() ) );
setCellEnsembleAttributeMatrixName(reader->readString("CellEnsembleAttributeMatrixName", getCellEnsembleAttributeMatrixName() ) );
setPhaseTypesArrayName(reader->readString("PhaseTypesArrayName", getPhaseTypesArrayName() ) );
setCrystalStructuresArrayName(reader->readString("CrystalStructuresArrayName", getCrystalStructuresArrayName() ) );
setInputFile( reader->readString( "InputFile", getInputFile() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void YSChoiAbaqusReader::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setDataContainerName(reader->readString("DataContainerName", getDataContainerName() ) );
setCellAttributeMatrixName(reader->readString("CellAttributeMatrixName", getCellAttributeMatrixName() ) );
setCellFeatureAttributeMatrixName(reader->readString("CellFeatureAttributeMatrixName", getCellFeatureAttributeMatrixName() ) );
setCellEnsembleAttributeMatrixName(reader->readString("CellEnsembleAttributeMatrixName", getCellEnsembleAttributeMatrixName() ) );
setCrystalStructuresArrayName(reader->readString("CrystalStructuresArrayName", getCrystalStructuresArrayName() ) );
setFeatureIdsArrayName(reader->readString("FeatureIdsArrayName", getFeatureIdsArrayName() ) );
setSurfaceFeaturesArrayName(reader->readString("SurfaceFeaturesArrayName", getSurfaceFeaturesArrayName() ) );
setCellPhasesArrayName(reader->readString("CellPhasesArrayName", getCellPhasesArrayName() ) );
setAvgQuatsArrayName(reader->readString("AvgQuatsArrayName", getAvgQuatsArrayName() ) );
setQuatsArrayName(reader->readString("QuatsArrayName", getQuatsArrayName() ) );
setCellEulerAnglesArrayName(reader->readString("CellEulerAnglesArrayName", getCellEulerAnglesArrayName() ) );
setInputFile( reader->readString( "InputFile", getInputFile() ) );
setInputFeatureInfoFile( reader->readString( "InputFeatureInfoFile", getInputFeatureInfoFile() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void YSChoiAbaqusReader::dataCheck()
{
DataArrayPath tempPath;
setErrorCondition(0);
DataContainer::Pointer m = getDataContainerArray()->createNonPrereqDataContainer<AbstractFilter>(this, getDataContainerName());
if(getErrorCondition() < 0) { return; }
ImageGeom::Pointer image = ImageGeom::CreateGeometry(DREAM3D::Geometry::ImageGeometry);
m->setGeometry(image);
QVector<size_t> tDims(3, 0);
AttributeMatrix::Pointer cellAttrMat = m->createNonPrereqAttributeMatrix<AbstractFilter>(this, getCellAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::Cell);
if(getErrorCondition() < 0 || NULL == cellAttrMat.get()) { return; }
tDims.resize(1);
tDims[0] = 0;
AttributeMatrix::Pointer cellFeatureAttrMat = m->createNonPrereqAttributeMatrix<AbstractFilter>(this, getCellFeatureAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::CellFeature);
if(getErrorCondition() < 0 || NULL == cellFeatureAttrMat.get()) { return; }
AttributeMatrix::Pointer cellEnsembleAttrMat = m->createNonPrereqAttributeMatrix<AbstractFilter>(this, getCellEnsembleAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::CellEnsemble);
if(getErrorCondition() < 0 || NULL == cellEnsembleAttrMat.get()) { return; }
QFileInfo fi(getInputFile());
if (getInputFile().isEmpty() == true)
{
QString ss = QObject::tr("%1 needs the Input File Set and it was not.").arg(ClassName());
setErrorCondition(-387);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
else if (fi.exists() == false)
{
QString ss = QObject::tr("The input file does not exist");
setErrorCondition(-388);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
else
{
bool ok = false;
//const unsigned int size(1024);
// Read header from data file to figure out how many points there are
QFile in(getInputFile());
if (!in.open(QIODevice::ReadOnly | QIODevice::Text))
{
QString msg = QObject::tr("Abaqus file could not be opened: %1").arg(getInputFile());
setErrorCondition(-100);
notifyErrorMessage(getHumanLabel(), "", getErrorCondition());
return;
}
QString word;
bool headerdone = false;
int xpoints, ypoints, zpoints;
float resx, resy, resz;
while (headerdone == false)
{
QByteArray buf = in.readLine();
if (buf.startsWith(DIMS))
{
QList<QByteArray> tokens = buf.split(' ');
xpoints = tokens[1].toInt(&ok, 10);
ypoints = tokens[2].toInt(&ok, 10);
zpoints = tokens[3].toInt(&ok, 10);
size_t dims[3] = { static_cast<size_t>(xpoints), static_cast<size_t>(ypoints), static_cast<size_t>(zpoints) };
m->getGeometryAs<ImageGeom>()->setDimensions(dims);
m->getGeometryAs<ImageGeom>()->setOrigin(0, 0, 0);
}
if (RES == word)
{
QList<QByteArray> tokens = buf.split(' ');
resx = tokens[1].toInt(&ok, 10);
resy = tokens[2].toInt(&ok, 10);
resz = tokens[3].toInt(&ok, 10);
float res[3] = {resx, resy, resz};
m->getGeometryAs<ImageGeom>()->setResolution(res);
}
}
}
QVector<size_t> dims(1, 3);
tempPath.update(getDataContainerName(), getCellAttributeMatrixName(), getCellEulerAnglesArrayName() );
m_CellEulerAnglesPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellEulerAngles = m_CellEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 4;
tempPath.update(getDataContainerName(), getCellAttributeMatrixName(), getQuatsArrayName() );
m_QuatsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(getDataContainerName(), getCellFeatureAttributeMatrixName(), getAvgQuatsArrayName() );
m_AvgQuatsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_AvgQuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AvgQuats = m_AvgQuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 1;
tempPath.update(getDataContainerName(), getCellAttributeMatrixName(), getCellPhasesArrayName() );
m_CellPhasesPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, tempPath, 1, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(getDataContainerName(), getCellFeatureAttributeMatrixName(), getSurfaceFeaturesArrayName() );
m_SurfaceFeaturesPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<bool>, AbstractFilter, bool>(this, tempPath, false, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceFeaturesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceFeatures = m_SurfaceFeaturesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(getDataContainerName(), getCellAttributeMatrixName(), getFeatureIdsArrayName() );
m_FeatureIdsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, tempPath, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
//typedef DataArray<unsigned int> XTalStructArrayType;
tempPath.update(getDataContainerName(), getCellEnsembleAttributeMatrixName(), getCrystalStructuresArrayName() );
m_CrystalStructuresPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter, uint32_t>(this, tempPath, Ebsd::CrystalStructure::Cubic_High, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void YSChoiAbaqusReader::setupFilterParameters()
{
FilterParameterVector parameters;
parameters.push_back(InputFileFilterParameter::New("Input File", "InputFile", getInputFile(), FilterParameter::Parameter));
parameters.push_back(InputFileFilterParameter::New("Input Feature Orientation File", "InputFeatureInfoFile", getInputFeatureInfoFile(), FilterParameter::Parameter));
parameters.push_back(StringFilterParameter::New("Data Container Name", "CellEulerAnglesArrayName", getCellEulerAnglesArrayName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Cell Attribute Matrix Name", "CellAttributeMatrixName", getCellAttributeMatrixName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Cell Feature Attribute Matrix Name", "CellFeatureAttributeMatrixName", getCellFeatureAttributeMatrixName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Cell Ensemble Attribute Matrix Name", "CellEnsembleAttributeMatrixName", getCellEnsembleAttributeMatrixName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Quats", "QuatsArrayName", getQuatsArrayName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("AvgQuats", "AvgQuatsArrayName", getAvgQuatsArrayName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Cell Phases", "CellPhasesArrayName", getCellPhasesArrayName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("SurfaceFeatures", "SurfaceFeaturesArrayName", getSurfaceFeaturesArrayName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("FeatureIds", "FeatureIdsArrayName", getFeatureIdsArrayName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Crystal Structures", "CrystalStructuresArrayName", getCrystalStructuresArrayName(), FilterParameter::CreatedArray));
setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void EnsembleInfoReader::setupFilterParameters()
{
FilterParameterVector parameters;
parameters.push_back(InputFileFilterParameter::New("Input Ensemble Info File", "InputFile", getInputFile(), FilterParameter::Parameter, "*.ini *.txt"));
{
DataContainerSelectionFilterParameter::RequirementType req;
parameters.push_back(DataContainerSelectionFilterParameter::New("Data Container", "DataContainerName", getDataContainerName(), FilterParameter::RequiredArray, req));
}
parameters.push_back(SeparatorFilterParameter::New("Ensemble Data", FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Ensemble Attribute Matrix", "CellEnsembleAttributeMatrixName", getCellEnsembleAttributeMatrixName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Crystal Structures", "CrystalStructuresArrayName", getCrystalStructuresArrayName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Phase Types", "PhaseTypesArrayName", getPhaseTypesArrayName(), FilterParameter::CreatedArray));
setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void EnsembleInfoReader::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
QFileInfo fi(getInputFile());
if (getInputFile().isEmpty() == true)
{
QString ss = QObject::tr("The input file must be set");
setErrorCondition(-387);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
else if (fi.exists() == false)
{
QString ss = QObject::tr("The input file does not exist");
setErrorCondition(-388);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
QString ext = fi.suffix();
if (ext != "ini" && ext != "txt")
{
QString ss = QObject::tr("Incorrect file extension in '%1'. The file extension must be .ini or .txt").arg(getInputFile());
setErrorCondition(-10018);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
if (m_CellEnsembleAttributeMatrixName.isEmpty() == true)
{
QString ss = QObject::tr("Ensemble Attribute Matrix name must be set");
setErrorCondition(-1);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
DataContainer::Pointer m = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, getDataContainerName());
if(getErrorCondition() < 0) { return; }
int32_t numphases = 0;
QSettings settings(getInputFile(), QSettings::IniFormat); // The .ini or .txt input file
settings.beginGroup("EnsembleInfo");
numphases = settings.value("Number_Phases").toInt(); // read number of phases from input file
settings.endGroup();
if (0 == numphases) // Either the group name "EnsembleInfo" is incorrect or 0 was entered as the Number_Phases
{
QString ss = QObject::tr("Check the group name EnsembleInfo and that Number_Phases > 0");
setErrorCondition(-10003);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
QVector<size_t> tDims(1, numphases + 1);
m->createNonPrereqAttributeMatrix<AbstractFilter>(this, getCellEnsembleAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::CellEnsemble);
if(getErrorCondition() < 0) { return; }
QVector<size_t> cDims(1, 1);
tempPath.update(getDataContainerName(), getCellEnsembleAttributeMatrixName(), getCrystalStructuresArrayName() );
m_CrystalStructuresPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter, uint32_t>(this, tempPath, Ebsd::CrystalStructure::UnknownCrystalStructure, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(getDataContainerName(), getCellEnsembleAttributeMatrixName(), getPhaseTypesArrayName() );
m_PhaseTypesPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter, uint32_t>(this, tempPath, DREAM3D::PhaseType::UnknownPhaseType, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_PhaseTypesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_PhaseTypes = m_PhaseTypesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MakeDataContainer::setupFilterParameters()
{
FilterParameterVector parameters;
parameters.push_back(StringFilterParameter::New("FeatureIds", "FeatureIdsArrayName", getFeatureIdsArrayName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Cell Euler Angles", "CellEulerAnglesArrayName", getCellEulerAnglesArrayName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Cell Phases", "CellPhasesArrayName", getCellPhasesArrayName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Crystal Structures", "CrystalStructuresArrayName", getCrystalStructuresArrayName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("LatticeConstants", "LatticeConstantsArrayName", getLatticeConstantsArrayName(), FilterParameter::CreatedArray));
setFilterParameters(parameters);
}
