void deserialise(std::istream & in)
{
uint64_t offset = 0;
ureads = getLittleEndianInteger4(in,offset); // number of reads in untrimmed database
treads = getLittleEndianInteger4(in,offset); // number of reads in trimmed database
cutoff = getLittleEndianInteger4(in,offset); // length cut off
all = getLittleEndianInteger4(in,offset); // keep all reads
// symbol frequences
for ( size_t i = 0; i < sizeof(freq)/sizeof(freq[0]); ++i )
freq[i] = getFloat(in,offset);
maxlen = getLittleEndianInteger4(in,offset); // maximum length of a reads
totlen = getLittleEndianInteger8(in,offset); // total length
/* nreads = */ getLittleEndianInteger4(in,offset); // number of reads
trimmed = getLittleEndianInteger4(in,offset);
/* part = */ getLittleEndianInteger4(in,offset);
/* ufirst = */ getLittleEndianInteger4(in,offset);
/* tfirst = */ getLittleEndianInteger4(in,offset);
/* path = */ getLittleEndianInteger8(in,offset); // 8 byte pointer
/* loaded = */ getLittleEndianInteger4(in,offset);
/* bases = */ getLittleEndianInteger8(in,offset); // 8 byte pointer
/* reads = */ getLittleEndianInteger8(in,offset); // 8 byte pointer
/* tracks = */ getLittleEndianInteger8(in,offset); // 8 byte pointer
nreads = ureads; /* number of untrimmed reads */
}
uint64_t deserialise(std::istream & in)
{
uint64_t offset = 0;
novl = getLittleEndianInteger8(in,offset);
tspace = getLittleEndianInteger4(in,offset);
if ( tspace <= TRACE_XOVR )
{
small = true;
tbytes = sizeof(uint8_t);
}
else
{
small = false;
tbytes = sizeof(uint16_t);
}
return offset;
}