static uint8_t _merge(
graph_t *gin, graph_t *gout, merge_set_t *mergesets, uint8_t nmergesets) {
uint32_t *nodemap;
uint32_t ninnodes;
uint32_t noutnodes;
nodemap = NULL;
memset(gout, 0, sizeof(graph_t));
ninnodes = graph_num_nodes(gin);
nodemap = calloc(ninnodes, sizeof(uint32_t));
if (nodemap == NULL) goto fail;
if (_create_nodemap(
gin, mergesets, nmergesets, nodemap, ninnodes, &noutnodes))
goto fail;
if (graph_create(gout, noutnodes, 0)) goto fail;
if (_copy_edges( gin, gout, nodemap, ninnodes)) goto fail;
if (_copy_nodelabels(gin, gout, nodemap, ninnodes,
mergesets, nmergesets)) goto fail;
free(nodemap);
return 0;
fail:
if (nodemap != NULL) free(nodemap);
graph_free(gout);
return 1;
}
int main()
{
srand(time(NULL));
int NVERTEX = 100;
struct Graph * g = undirected_graph_rand(NVERTEX);
undirected_graph_print(g);
printf("Random Delete Vertex:\n");
// random delete vertex
int i;
for(i=0;i<NVERTEX;i++) {
int n = rand()%NVERTEX;
printf("delete: %d\n", n);
undirected_graph_del_vertex(g,n);
}
undirected_graph_print(g);
printf("Delete All Edges: \n");
for(i=0;i<NVERTEX;i++) {
int j;
for(j=i+1;j<NVERTEX;j++) {
undirected_graph_del_edge(g, i, j);
}
}
undirected_graph_print(g);
graph_free(g);
return 0;
}
CTEST2(graph, metis_part)
{
for(idx_t i=0; i < data->ntensors; ++i) {
sptensor_t * const tt = data->tensors[i];
splatt_graph * graph = graph_convert(tt);
idx_t mycut = 0;
idx_t cut = 0;
idx_t * parts = metis_part(graph, 8, &cut);
/* now make sure cut actually matches */
for(idx_t v=0; v < graph->nvtxs; ++v) {
idx_t partA = parts[v];
for(idx_t e=graph->eptr[v]; e < graph->eptr[v+1]; ++e) {
idx_t partB = parts[graph->eind[e]];
if(partA != partB) {
if(graph->ewgts != NULL) {
mycut += graph->ewgts[e];
} else {
++mycut;
}
}
}
}
/* / 2 because of undirected graph */
ASSERT_EQUAL(cut, mycut / 2);
splatt_free(parts);
graph_free(graph);
}
}
uint8_t _partition_to_graph(
node_partition_t *part, graph_t *g, graph_t *conn) {
uint64_t i;
uint32_t *group;
uint32_t groupsz;
g->neighbours = NULL;
if (graph_create(g, part->nnodes, 0)) goto fail;
for (i = 0; i < part->nparts; i++) {
group = (uint32_t *)part->parts[i].data;
groupsz = part->parts[i].size;
if (conn == NULL) {
if (graph_connect(g, group, groupsz))
goto fail;
}
else {
if (graph_connect_from(g, conn, group, groupsz))
goto fail;
}
}
return 0;
fail:
if (g->neighbours != NULL) graph_free(g);
return 1;
}
int igraph_i_largest_weighted_cliques(const igraph_t *graph,
const igraph_vector_t *vertex_weights, igraph_vector_ptr_t *res)
{
graph_t *g;
igraph_integer_t vcount = igraph_vcount(graph);
if (vcount == 0) {
igraph_vector_ptr_clear(res);
return IGRAPH_SUCCESS;
}
igraph_to_cliquer(graph, &g);
IGRAPH_FINALLY(graph_free, g);
IGRAPH_CHECK(set_weights(vertex_weights, g));
igraph_vector_ptr_clear(res);
igraph_cliquer_opt.user_data = res;
igraph_cliquer_opt.user_function = &collect_cliques_callback;
IGRAPH_FINALLY(free_clique_list, res);
CLIQUER_INTERRUPTABLE(clique_find_all(g, 0, 0, FALSE, &igraph_cliquer_opt));
IGRAPH_FINALLY_CLEAN(1);
graph_free(g);
IGRAPH_FINALLY_CLEAN(1);
return IGRAPH_SUCCESS;
}
int igraph_i_weighted_clique_number(const igraph_t *graph,
const igraph_vector_t *vertex_weights, igraph_real_t *res)
{
graph_t *g;
igraph_integer_t vcount = igraph_vcount(graph);
if (vcount == 0) {
*res = 0;
return IGRAPH_SUCCESS;
}
igraph_to_cliquer(graph, &g);
IGRAPH_FINALLY(graph_free, g);
IGRAPH_CHECK(set_weights(vertex_weights, g));
igraph_cliquer_opt.user_function = NULL;
/* we are not using a callback function, thus this is not interruptable */
*res = clique_max_weight(g, &igraph_cliquer_opt);
graph_free(g);
IGRAPH_FINALLY_CLEAN(1);
return IGRAPH_SUCCESS;
}
int igraph_i_cliquer_callback(const igraph_t *graph,
igraph_integer_t min_size, igraph_integer_t max_size,
igraph_clique_handler_t *cliquehandler_fn, void *arg)
{
graph_t *g;
struct callback_data cd;
igraph_integer_t vcount = igraph_vcount(graph);
if (vcount == 0)
return IGRAPH_SUCCESS;
if (min_size <= 0) min_size = 1;
if (max_size <= 0) max_size = 0;
if (max_size > 0 && max_size < min_size)
IGRAPH_ERROR("max_size must not be smaller than min_size", IGRAPH_EINVAL);
igraph_to_cliquer(graph, &g);
IGRAPH_FINALLY(graph_free, g);
cd.handler = cliquehandler_fn;
cd.arg = arg;
igraph_cliquer_opt.user_data = &cd;
igraph_cliquer_opt.user_function = &callback_callback;
CLIQUER_INTERRUPTABLE(clique_unweighted_find_all(g, min_size, max_size, /* maximal= */ FALSE, &igraph_cliquer_opt));
graph_free(g);
IGRAPH_FINALLY_CLEAN(1);
return IGRAPH_SUCCESS;
}
uint8_t ngdb_read(char *ngdbfile, graph_t *graph) {
ngdb_t *ngdb;
uint32_t i;
uint32_t nnodes;
ngdb = NULL;
memset(graph, 0, sizeof(graph_t));
ngdb = ngdb_open(ngdbfile);
if (ngdb == NULL) goto fail;
nnodes = ngdb_num_nodes(ngdb);
if (graph_create(graph, nnodes, 0)) goto fail;
if (_read_hdr(ngdb, graph)) goto fail;
for (i = 0; i < nnodes; i++) {
if (_read_refs (ngdb, graph, i) != 0) goto fail;
if (_read_label(ngdb, graph, i) != 0) goto fail;
}
ngdb_close(ngdb);
return 0;
fail:
if (ngdb != NULL) ngdb_close(ngdb);
graph_free(graph);
return 1;
}
int igraph_i_cliquer_cliques(const igraph_t *graph, igraph_vector_ptr_t *res,
igraph_integer_t min_size, igraph_integer_t max_size)
{
graph_t *g;
igraph_integer_t vcount = igraph_vcount(graph);
if (vcount == 0) {
igraph_vector_ptr_clear(res);
return IGRAPH_SUCCESS;
}
if (min_size <= 0) min_size = 1;
if (max_size <= 0) max_size = 0;
if (max_size > 0 && max_size < min_size)
IGRAPH_ERROR("max_size must not be smaller than min_size", IGRAPH_EINVAL);
igraph_to_cliquer(graph, &g);
IGRAPH_FINALLY(graph_free, g);
igraph_vector_ptr_clear(res);
igraph_cliquer_opt.user_data = res;
igraph_cliquer_opt.user_function = &collect_cliques_callback;
IGRAPH_FINALLY(free_clique_list, res);
CLIQUER_INTERRUPTABLE(clique_unweighted_find_all(g, min_size, max_size, /* maximal= */ FALSE, &igraph_cliquer_opt));
IGRAPH_FINALLY_CLEAN(1);
graph_free(g);
IGRAPH_FINALLY_CLEAN(1);
return IGRAPH_SUCCESS;
}
int main(int argc, char *argv[]) {
struct argp argp = {options, _parse_opt, "INPUT", doc};
args_t args;
graph_t g;
memset(&args, 0, sizeof(args));
startup("dumpngdb", argc, argv, &argp, &args);
if (ngdb_read(args.input, &g)) {
printf("error reading ngdb file %s\n", args.input);
goto fail;
}
if (args.meta) _meta( &g);
if (args.labels) _labels(&g);
if (args.graph) _graph( &g, args.weights, args.dists);
graph_free(&g);
return 0;
fail:
return 1;
}
uint8_t _mk_nlbl_map(char **inputs, uint16_t ninputs, nlbl_map_t *map) {
uint32_t i;
graph_t g;
if (array_create(&(map->labels), sizeof(graph_label_t), 1000)) goto fail;
if (array_create(&(map->nodeids), sizeof(array_t), 1000)) goto fail;
if (array_create(&(map->sizes), sizeof(uint32_t), ninputs)) goto fail;
if (array_create(&(map->idmap), sizeof(array_t), ninputs)) goto fail;
array_set_cmps(&(map->labels), _compare_glbl, _compare_glbl_ins);
for (i = 0; i < ninputs; i++) {
if (ngdb_read(inputs[i], &g)) goto fail;
if (_update_nlbl_map(&g, ninputs, i, map)) goto fail;
graph_free(&g);
}
for (i = 0; i < ninputs; i++) {
if (_mk_id_map(map, i)) goto fail;
}
return 0;
fail:
return 1;
}
void group_free(graph_s *g)
{
for(int i =0;i< g->nodes; i++){
free(((vtab_s *)g->node_list[i])->list);
free(g->node_list[i]);
}
graph_free(g);
}
void
network_free(Network *self)
{
if (self->graph) {
graph_free(self->graph);
}
g_free(self);
}
// Decrement reference count, invoking graph_free if reference count
// drops to zero.
void
graph_unref (Graph *self)
{
g_assert (self->reference_count >= 1);
self->reference_count--;
if ( self->reference_count == 0 ) {
graph_free (self);
}
}
void graph_get_rec_crgg(graph *g, int vertices, double width, double r, double *x, double *y, well1024 *rng)
{
graph_init(g, vertices);
graph_get_rec_rgg(g, vertices, width, r, x, y, rng);
while (graph_strongly_connected(g) == FALSE)
{
graph_free(g);
graph_get_rec_rgg(g, vertices, width, r, x, y, rng);
}
}
int main(void) {
int d = 0;
int i = 0;
int x = 0;
graph my_graph = NULL;
if (1 == scanf("%d", &d)) {
my_graph = graph_new(d);
}
while (2 == scanf("%d%d", &i, &x)) {
graph_add_edge(my_graph, i, x);
}
/*
graph my_graph = graph_new(8);
graph_bi_add_edge(my_graph, 0, 1);
graph_bi_add_edge(my_graph, 0, 4);
graph_bi_add_edge(my_graph, 1, 0);
graph_bi_add_edge(my_graph, 1, 5);
graph_bi_add_edge(my_graph, 2, 3);
graph_bi_add_edge(my_graph, 2, 5);
graph_bi_add_edge(my_graph, 2, 6);
graph_bi_add_edge(my_graph, 3, 2);
graph_bi_add_edge(my_graph, 3, 6);
graph_bi_add_edge(my_graph, 3, 7);
graph_bi_add_edge(my_graph, 4, 0);
graph_bi_add_edge(my_graph, 5, 1);
graph_bi_add_edge(my_graph, 5, 2);
graph_bi_add_edge(my_graph, 5, 6);
graph_bi_add_edge(my_graph, 6, 2);
graph_bi_add_edge(my_graph, 6, 3);
graph_bi_add_edge(my_graph, 6, 5);
graph_bi_add_edge(my_graph, 6, 7);
graph_bi_add_edge(my_graph, 7, 3);
graph_bi_add_edge(my_graph, 7, 6);
*/
graph_dfs(my_graph);
graph_print(my_graph);
graph_free(my_graph);
return EXIT_SUCCESS;
}
int powaur_crawl(alpm_list_t *targets)
{
int ret = 0;
char cwd[PATH_MAX];
if (!getcwd(cwd, PATH_MAX)) {
return error(PW_ERR_GETCWD);
}
if (chdir(powaur_dir)) {
return error(PW_ERR_CHDIR, powaur_dir);
}
struct pw_hashdb *hashdb = build_hashdb();
if (!hashdb) {
pw_fprintf(PW_LOG_ERROR, stderr, "Unable to build hash database!\n");
ret = -1;
}
alpm_list_t *i, *target_pkgs;
struct graph *graph;
struct stack *topost = stack_new(sizeof(int));
int have_cycles;
for (i = targets; i; i = i->next) {
stack_reset(topost);
graph = NULL;
target_pkgs = alpm_list_add(NULL, i->data);
build_dep_graph(&graph, hashdb, target_pkgs, RESOLVE_THOROUGH);
if (have_cycles) {
printf("Cyclic dependencies for package \"%s\"\n", i->data);
}
graph_toposort(graph, topost);
if (stack_empty(topost)) {
printf("Package \"%s\" has no dependencies.\n", i->data);
} else {
printf("\n");
pw_printf(PW_LOG_INFO, "\"%s\" topological order: ", i->data);
print_topo_order(graph, topost);
}
graph_free(graph);
alpm_list_free(target_pkgs);
}
stack_free(topost);
hashdb_free(hashdb);
if (chdir(cwd)) {
return error(PW_ERR_RESTORECWD);
}
return ret;
}
void
sys_free(struct sys *sys)
{
int i;
for (i = 0; i < sys_get_frame_count(sys); i++)
atoms_free(sys->frames[i].atoms);
sel_free(sys->sel);
sel_free(sys->visible);
graph_free(sys->graph);
free(sys->frames);
free(sys);
}
void game_free(game_t *game)
{
graph_free(game->graph);
mpq_clear(game->s);
mpq_clear(game->t);
mpq_clear(game->p_c);
g_free(game->initial_config);
g_free(game->current_config);
g_free(game->next_config);
g_free(game);
}
END_TEST
int main() {
g = graph_new();
mu_run_test(test_add_nodes);
mu_run_test(test_edge);
graph_toNeato(g, "graph.dot");
printf("Fichier .dot en sortie : graph.dot\n");
graph_free(g);
mu_summary();
return __tests_failed;
}
CTEST2(graph, graph_convert)
{
for(idx_t i=0; i < data->ntensors; ++i) {
sptensor_t * const tt = data->tensors[i];
splatt_graph * graph = graph_convert(tt);
/* count vtxs */
vtx_t nv = 0;
for(idx_t m=0; m < tt->nmodes; ++m) {
nv += (vtx_t) tt->dims[m];
}
ASSERT_EQUAL(nv, graph->nvtxs);
/* now write graph to tmp.txt and compare against good graph */
FILE * fout = open_f(TMP_FILE, "w");
graph_write_file(graph, fout);
fclose(fout);
FILE * fin = open_f(TMP_FILE, "r");
FILE * gold = open_f(graphs[i], "r");
/* check file lengths lengths */
fseek(fin , 0 , SEEK_END);
fseek(gold , 0 , SEEK_END);
long length_fin = ftell(fin);
long length_gold = ftell(gold);
ASSERT_EQUAL(length_gold, length_fin);
rewind(fin);
rewind(gold);
/* compare each byte */
char fbyte;
char gbyte;
for(long byte=0; byte < length_fin; ++byte) {
fread(&fbyte, 1, 1, fin);
fread(&gbyte, 1, 1, gold);
ASSERT_EQUAL(gbyte, fbyte);
}
/* clean up */
fclose(gold);
fclose(fin);
remove(TMP_FILE);
graph_free(graph);
}
}
int igraph_i_weighted_cliques(const igraph_t *graph,
const igraph_vector_t *vertex_weights, igraph_vector_ptr_t *res,
igraph_real_t min_weight, igraph_real_t max_weight, igraph_bool_t maximal)
{
graph_t *g;
igraph_integer_t vcount = igraph_vcount(graph);
if (vcount == 0) {
igraph_vector_ptr_clear(res);
return IGRAPH_SUCCESS;
}
if (min_weight != (int) min_weight) {
IGRAPH_WARNING("Only integer vertex weights are supported; the minimum weight will be truncated to its integer part");
min_weight = (int) min_weight;
}
if (max_weight != (int) max_weight) {
IGRAPH_WARNING("Only integer vertex weights are supported; the maximum weight will be truncated to its integer part");
max_weight = (int) max_weight;
}
if (min_weight <= 0) min_weight = 1;
if (max_weight <= 0) max_weight = 0;
if (max_weight > 0 && max_weight < min_weight)
IGRAPH_ERROR("max_weight must not be smaller than min_weight", IGRAPH_EINVAL);
igraph_to_cliquer(graph, &g);
IGRAPH_FINALLY(graph_free, g);
IGRAPH_CHECK(set_weights(vertex_weights, g));
igraph_vector_ptr_clear(res);
igraph_cliquer_opt.user_data = res;
igraph_cliquer_opt.user_function = &collect_cliques_callback;
IGRAPH_FINALLY(free_clique_list, res);
CLIQUER_INTERRUPTABLE(clique_find_all(g, min_weight, max_weight, maximal, &igraph_cliquer_opt));
IGRAPH_FINALLY_CLEAN(1);
graph_free(g);
IGRAPH_FINALLY_CLEAN(1);
return IGRAPH_SUCCESS;
}
static void run_service(struct cfg_main *cfg) {
struct errbuf err;
struct graph *g = graph_build(cfg, &err);
if(!g) {
fprintf(stderr, "topology: Not enough memory to build graph");
exit(1);
}
if(!err.empty) {
err_print(&err, stderr);
if(err.fatal) {
graph_free(g);
exit(1);
}
}
topologist_loop(cfg, g);
}
/* befreiht das Koordinatensystem von allen Graphen */
void coord_system_clear(CoordSystem *coord)
{
GList *graph;
if (coord->graphs == NULL)
return;
graph = g_list_first(coord->graphs);
while (graph != NULL) {
graph_free(graph->data);
graph = graph->next;
}
g_list_free(coord->graphs);
coord->graphs = NULL;
}
/*--------------------------------------------------------------------*/
void reorder_matrix(msieve_obj *obj,
uint32 **rowperm,
uint32 **colperm) {
graph_t graph;
heap_t heap;
logprintf(obj, "permuting matrix for faster multiplies\n");
graph_init(obj, &graph, &heap);
do_partition(obj, &graph, &heap,
graph.num_cols,
graph.num_cols + graph.num_rows - 1,
0,
graph.num_cols - 1);
graph_free(&graph, rowperm, colperm);
}
int main(int argc, char** argv)
{
if (argc != 3) {
printf("please give the path of the graph and the num of threads.\n");
return -1;
}
graph_read_and_alloc(argv[1]);
float time_used = bfs(atoi(argv[2]));
calculate_counter();
gen_level_log();
gen_test_log_cpu(time_used, argv[1], "conflict", atoi(argv[2]));
graph_free();
return 0;
}
int main(int argc, char *argv[]) {
int v1;
int v2;
graph g;
char option;
int size = 0;
graph_t type = DIRECTED;
const char *optstring = "s:";
while((option = getopt(argc, argv, optstring)) != EOF) {
switch(option) {
case 's':
size = atoi(optarg);
break;
default:
printf("input the number of vertices\n");
return EXIT_FAILURE;
}
}
g = graph_new(size);
while(2==scanf("%d%d", &v1, &v2)) {
g = graph_add_edge(g, v1, v2, type);
}
/**
g = graph_add_edge(g, 0, 1, type);
g = graph_add_edge(g, 0, 4, type);
g = graph_add_edge(g, 5, 1, type);
g = graph_add_edge(g, 5, 2, type);
g = graph_add_edge(g, 5, 6, type);
g = graph_add_edge(g, 6, 2, type);
g = graph_add_edge(g, 6, 3, type);
g = graph_add_edge(g, 6, 7, type);
g = graph_add_edge(g, 3, 2, type);
g = graph_add_edge(g, 3, 7, type);
*/
graph_print(g);
graph_dfs(g);
g = graph_free(g);
return EXIT_SUCCESS;
}
uint8_t _mk_avg_graph(
char **inputs,
uint16_t ninputs,
graph_t *gavg,
nlbl_map_t *map,
edge_weight_t edgeweight) {
uint64_t i;
uint32_t nnodes;
graph_label_t *lbl;
array_t *nodemap;
graph_t gin;
nnodes = map->labels.size;
if (graph_create(gavg, nnodes, 0)) goto fail;
for (i = 0; i < nnodes; i++) {
lbl = array_getd(&(map->labels), i);
if (graph_set_nodelabel(gavg, i, lbl)) goto fail;
}
for (i = 0; i < ninputs; i++) {
nodemap = array_getd(&(map->idmap), i);
if (ngdb_read(inputs[i], &gin)) goto fail;
if (_update_avg_graph(&gin, gavg, nodemap, edgeweight, ninputs))
goto fail;
graph_free(&gin);
}
return 0;
fail:
return 1;
}
int igraph_i_cliquer_histogram(const igraph_t *graph, igraph_vector_t *hist,
igraph_integer_t min_size, igraph_integer_t max_size)
{
graph_t *g;
int i;
igraph_integer_t vcount = igraph_vcount(graph);
if (vcount == 0) {
igraph_vector_clear(hist);
return IGRAPH_SUCCESS;
}
if (min_size <= 0) min_size = 1;
if (max_size <= 0) max_size = vcount; /* also used for initial hist vector size, do not set to zero */
if (max_size < min_size)
IGRAPH_ERROR("max_size must not be smaller than min_size", IGRAPH_EINVAL);
igraph_to_cliquer(graph, &g);
IGRAPH_FINALLY(graph_free, g);
igraph_vector_resize(hist, max_size);
igraph_vector_null(hist);
igraph_cliquer_opt.user_data = hist;
igraph_cliquer_opt.user_function = &count_cliques_callback;
CLIQUER_INTERRUPTABLE(clique_unweighted_find_all(g, min_size, max_size, /* maximal= */ FALSE, &igraph_cliquer_opt));
for (i=max_size; i > 0; --i)
if (VECTOR(*hist)[i-1] > 0)
break;
igraph_vector_resize(hist, i);
igraph_vector_resize_min(hist);
graph_free(g);
IGRAPH_FINALLY_CLEAN(1);
return IGRAPH_SUCCESS;
}
int main() {
int n, m, c, k;
graph_t* g=NULL;
int* color_freq=NULL;
skipws(stdin);
while (!feof(stdin)) {
graph_read(&g, &color_freq, &n, &m, &k, &c);
/* Print out what we just read in. */
fprintf(stdout,
"parameters: n = %d, m = %d, c = %d, k = %d\n",
n, m, c, k);
graph_print(g, color_freq, c);
/* Release memory & consider next graph. */
FREE(color_freq);
graph_free(g);
skipws(stdin);
}
return EXIT_SUCCESS;
}