static void gt_seqtranslate_arguments_delete(void *tool_arguments)
{
  GtTranslateArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_output_file_info_delete(arguments->ofi);
  gt_file_delete(arguments->outfp);
  gt_free(arguments);
}
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static void gt_seqfilter_arguments_delete(void *tool_arguments)
{
  SeqFilterArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_free(arguments);
}
static void gt_mergefeat_arguments_delete(void *tool_arguments)
{
  InterFeatArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_free(arguments);
}
static void gt_convertseq_arguments_delete(void *tool_arguments)
{
  GtConvertseqArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_free(arguments);
}
static void gt_gff3_to_gtf_arguments_delete(void *tool_arguments)
{
  GFF3ToGTFArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_free(arguments);
}
Exemple #6
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static void gt_encseq_info_arguments_delete(void *tool_arguments)
{
  GtEncseqInfoArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_free(arguments);
}
static void gt_eval_arguments_delete(void *tool_arguments)
{
  EvalArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_free(arguments);
}
static void gt_inlineseq_add_arguments_delete(void *tool_arguments)
{
  InlineseqAddArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_seqid2file_info_delete(arguments->s2fi);
  gt_output_file_info_delete(arguments->ofi);
  gt_free(arguments);
}
Exemple #9
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static void gt_extractfeat_arguments_delete(void *tool_arguments)
{
  GtExtractFeatArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_seqid2file_info_delete(arguments->s2fi);
  gt_str_delete(arguments->type);
  gt_free(arguments);
}
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static void gt_speck_arguments_delete(void *tool_arguments)
{
  SpeccheckArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_str_delete(arguments->specfile);
  gt_file_delete(arguments->outfp);
  gt_seqid2file_info_delete(arguments->s2fi);
  gt_output_file_info_delete(arguments->ofi);
  gt_free(arguments);
}
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static void gt_interfeat_arguments_delete(void *tool_arguments)
{
  InterFeatArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_str_delete(arguments->source_type);
  gt_str_delete(arguments->dest_type);
  gt_free(arguments);
}
Exemple #12
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static void gt_gff3_arguments_delete(void *tool_arguments)
{
  GFF3Arguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_str_delete(arguments->newsource);
  gt_output_file_info_delete(arguments->ofi);
  gt_typecheck_info_delete(arguments->tci);
  gt_str_delete(arguments->offsetfile);
  gt_free(arguments);
}
static void gt_condenser_search_arguments_delete(void *tool_arguments)
{
  GtCondenserSearchArguments *arguments = tool_arguments;
  if (arguments != NULL) {
    gt_str_delete(arguments->dbpath);
    gt_str_delete(arguments->querypath);
    gt_file_delete(arguments->outfp);
    gt_output_file_info_delete(arguments->ofi);
    gt_free(arguments);
  }
}
static void gt_condenseq_extract_arguments_delete(void *tool_arguments)
{
  GtCondenserExtractArguments *arguments = tool_arguments;
  if (arguments != NULL) {
    gt_file_delete(arguments->outfp);
    gt_output_file_info_delete(arguments->ofi);
    gt_str_delete(arguments->mode);
    gt_str_delete(arguments->sepchar);
    gt_option_delete(arguments->sepchar_opt);
    gt_free(arguments);
  }
}
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static void gt_ltrdigest_arguments_delete(void *tool_arguments)
{
  GtLTRdigestOptions *arguments = tool_arguments;
  if (!arguments) return;
  gt_str_delete(arguments->trna_lib);
  gt_str_delete(arguments->prefix);
  gt_str_delete(arguments->cutoffs);
  gt_str_array_delete(arguments->hmm_files);
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_seqid2file_info_delete(arguments->s2fi);
  gt_free(arguments);
}
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static void gt_select_arguments_delete(void *tool_arguments)
{
  SelectArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_str_delete(arguments->targetgt_strand_char);
  gt_str_delete(arguments->gt_strand_char);
  gt_str_delete(arguments->source);
  gt_str_delete(arguments->seqid);
  gt_str_array_delete(arguments->filter_files);
  gt_str_delete(arguments->filter_logic);
  gt_str_delete(arguments->dropped_file);
  gt_free(arguments);
}