static void printCladeOrgDbTree(struct jsonWrite *jw)
/* Print out the tree of clades, organisms and dbs as JSON. Each node has value and label
* for menu options; clade nodes and org nodes also have children and default. */
{
jsonWriteListStart(jw, "cladeOrgDb");
struct slPair *clade, *cladeOptions = hGetCladeOptions();
struct dbDb *centralDbDbList = hDbDbList();
for (clade = cladeOptions; clade != NULL; clade = clade->next)
{
jsonWriteObjectStart(jw, NULL);
jsonWriteValueLabel(jw, clade->name, clade->val);
jsonWriteListStart(jw, "children");
struct slPair *org, *orgOptions = hGetGenomeOptionsForClade(clade->name);
for (org = orgOptions; org != NULL; org = org->next)
{
jsonWriteObjectStart(jw, NULL);
jsonWriteValueLabel(jw, org->name, org->val);
jsonWriteListStart(jw, "children");
struct dbDb *dbDb, *dbDbList;
if (isHubTrack(org->name))
dbDbList = trackHubGetDbDbs(clade->name);
else
dbDbList = centralDbDbList;
for (dbDb = dbDbList; dbDb != NULL; dbDb = dbDb->next)
{
if (sameString(org->name, dbDb->genome))
{
jsonWriteObjectStart(jw, NULL);
jsonWriteValueLabel(jw, dbDb->name, dbDb->description);
jsonWriteString(jw, "defaultPos", dbDb->defaultPos);
jsonWriteObjectEnd(jw);
}
}
jsonWriteListEnd(jw); // children (dbs)
jsonWriteString(jw, "default", trimSpaces(hDefaultDbForGenome(org->name)));
jsonWriteObjectEnd(jw); // org
}
jsonWriteListEnd(jw); // children (orgs)
jsonWriteString(jw, "default", trimSpaces(hDefaultGenomeForClade(clade->name)));
jsonWriteObjectEnd(jw); // clade
}
jsonWriteListEnd(jw);
}
static void lookupTerm()
/* Look for matches to term in hgcentral and print as JSON for autocomplete if found. */
{
char *term = getSearchTermUpperCase();
// Write JSON response with list of matches
puts("Content-Type:text/javascript\n");
struct dbDb *dbDbList = hDbDbList();
struct dbDbMatch *matchList = searchDbDb(dbDbList, term);
struct aHubMatch *aHubMatchList = searchPublicHubs(dbDbList, term);
struct jsonWrite *jw = jsonWriteNew();
jsonWriteListStart(jw, NULL);
// Write out JSON for dbDb matches, if any; add category if we found assembly hub matches too.
char *category = aHubMatchList ? "UCSC databases" : NULL;
struct dbDbMatch *match;
for (match = matchList; match != NULL; match = match->next)
writeDbDbMatch(jw, match, term, category);
// Write out assembly hub matches, if any.
writeAssemblyHubMatches(jw, aHubMatchList);
jsonWriteListEnd(jw);
puts(jw->dy->string);
jsonWriteFree(&jw);
}
