bool validate(const IntegralBusPort *port, ProblemList &problemList) const {
QVariant busMap = port->getParameter(Workflow::IntegralBusPort::BUS_MAP_ATTR_ID)->getAttributePureValue();
bool data = isBinded(busMap.value<QStrStrMap>(), READS_URL_SLOT_ID);
if (!data){
QString dataName = slotName(port, READS_URL_SLOT_ID);
problemList.append(Problem(GenomeAlignerWorker::tr("The slot must be not empty: '%1'").arg(dataName)));
return false;
}
QString slot1Val = busMap.value<QStrStrMap>().value(READS_URL_SLOT_ID);
QString slot2Val = busMap.value<QStrStrMap>().value(READS_PAIRED_URL_SLOT_ID);
U2OpStatusImpl os;
const QList<IntegralBusSlot>& slots1 = IntegralBusSlot::listFromString(slot1Val, os);
const QList<IntegralBusSlot>& slots2 = IntegralBusSlot::listFromString(slot2Val, os);
bool hasCommonElements = false;
foreach(const IntegralBusSlot& ibsl1, slots1){
if (hasCommonElements){
break;
}
foreach(const IntegralBusSlot& ibsl2, slots2){
if (ibsl1 == ibsl2){
hasCommonElements = true;
break;
}
}
}
if (hasCommonElements){
problemList.append(Problem(GenomeAlignerWorker::tr("Bowtie2 cannot recognize read pairs from the same file. Please, perform demultiplexing first.")));
return false;
}
return true;
}
GeekBind::BindStatus GeekBind::isBinded(string &key)
{
KeyBind k;
k.set(key.c_str());
return isBinded(k);
}
