bool GibbsTrackingFilter< ItkQBallImageType >::LoadParameters()
{
m_AbortTracking = true;
try
{
if( m_LoadParameterFile.length()==0 )
{
m_AbortTracking = false;
return true;
}
MITK_INFO << "GibbsTrackingFilter: loading parameter file " << m_LoadParameterFile;
TiXmlDocument doc( m_LoadParameterFile );
doc.LoadFile();
TiXmlHandle hDoc(&doc);
TiXmlElement* pElem;
TiXmlHandle hRoot(0);
pElem = hDoc.FirstChildElement().Element();
hRoot = TiXmlHandle(pElem);
pElem = hRoot.FirstChildElement("parameter_set").Element();
string iterations(pElem->Attribute("iterations"));
m_Iterations = boost::lexical_cast<unsigned long>(iterations);
string particleLength(pElem->Attribute("particle_length"));
m_ParticleLength = boost::lexical_cast<float>(particleLength);
string particleWidth(pElem->Attribute("particle_width"));
m_ParticleWidth = boost::lexical_cast<float>(particleWidth);
string partWeight(pElem->Attribute("particle_weight"));
m_ParticleWeight = boost::lexical_cast<float>(partWeight);
string startTemp(pElem->Attribute("temp_start"));
m_StartTemperature = boost::lexical_cast<float>(startTemp);
string endTemp(pElem->Attribute("temp_end"));
m_EndTemperature = boost::lexical_cast<float>(endTemp);
string inExBalance(pElem->Attribute("inexbalance"));
m_InexBalance = boost::lexical_cast<float>(inExBalance);
string fiberLength(pElem->Attribute("fiber_length"));
m_MinFiberLength = boost::lexical_cast<float>(fiberLength);
string curvThres(pElem->Attribute("curvature_threshold"));
m_CurvatureThreshold = cos(boost::lexical_cast<float>(curvThres)*M_PI/180);
m_AbortTracking = false;
MITK_INFO << "GibbsTrackingFilter: parameter file loaded successfully";
return true;
}
catch(...)
{
MITK_INFO << "GibbsTrackingFilter: could not load parameter file";
return false;
}
}
void Wave::createAnimation()
{
float /*origin_x, origin_y,*/ distance, height, ripple_interval = 1.3;
fillCubeArray(0x00);
// QVector<QVector<QVector<quint8> > > tripleVector(iterations(),QVector<QVector<quint8> >(8, QVector<quint8>(8)));
for (quint16 i=0; i<iterations(); i++)
{
if(m_abort)
return;
for (quint8 x=0; x<8; x++)
{
for (quint8 y=0; y<8; y++)
{
distance = distance2d(3.5,3.5,x,y)/9.899495*8;
height = 4+sin(distance/ripple_interval+static_cast<float>(i)/50)*4;
setBixel(x,y,static_cast<quint8>(height));
}
}
waitMs(speed());
// tripleVector[i] = cubeFrame;
fillCubeArray(0x00);
}
// for (int i = 0; i < iterations(); i++) {
// sendData(tripleVector[i]);
//// if(i/10 == 0)
//// waitMs(speed());
// }
Q_EMIT done();
}
void DilateTest::testManual0()
{
m_operator->setParameter(Dilate::PARAMETER_DATA_FLOW, runtime::Enum(Dilate::MANUAL));
m_operator->initialize();
m_operator->activate();
runtime::DataContainer src(new cvsupport::Image("lenna.jpg"));
runtime::DataContainer dst(new cvsupport::Image(1000000));
runtime::UInt32 ksizex(3);
runtime::UInt32 ksizey(4);
runtime::Enum shape(1);
runtime::UInt32 iterations(2);
m_operator->setInputData(Dilate::INPUT_SRC, src);
m_operator->setInputData(Dilate::INPUT_DST, dst);
m_operator->setParameter(Dilate::PARAMETER_KSIZEX, ksizex);
m_operator->setParameter(Dilate::PARAMETER_KSIZEY, ksizey);
m_operator->setParameter(Dilate::PARAMETER_SHAPE, shape);
m_operator->setParameter(Dilate::PARAMETER_ITERATIONS, iterations);
runtime::DataContainer dstResult = m_operator->getOutputData(Dilate::OUTPUT_DST);
runtime::ReadAccess dstAccess(dstResult);
cvsupport::Image::save("DilateTest_testManual0_dst.png", dstAccess.get<runtime::Image>());
}
void OpReplaceRepeated::Apply(Expression *expression, Calculator *calculator, int32 recursions)
{
if(expression->LeafCount() != 2)
throw ArgumentException("ReplaceRepeated expects 2 arguments.");
if(expression->LeafCount() != 2)
throw ArgumentException("ReplaceRepeated expects 2 arguments.");
string leafFunction = expression->Leaf(1)->FunctionName();
if(leafFunction != "Rule" && leafFunction != "RuleDelayed" && leafFunction != "List")
throw ArgumentException("ReplaceRepeated expects its second argument to be a rule or a list of rules.");
ExprVector rules;
if(leafFunction == "List")
{
for(ExprVector::const_iterator item = expression->Leaf(1)->Leaves().begin(); item != expression->Leaf(1)->Leaves().end(); ++ item)
if((*item)->FunctionName() != "Rule" && (*item)->FunctionName() != "RuleDelayed")
throw ArgumentException("ReplaceRepeated expects its second argument to be a rule or a list of rules.");
rules = expression->Leaf(1)->Leaves();
}
else
rules.push_back(expression->Leaf(1));
int32 iterations(0);
Expression *result = expression->Leaf(0);
while(true)
{
bool changed(false);
if(!result->ReplaceAll(rules, calculator, &changed))
break;
if(!changed)
break;
++iterations;
if(iterations >= Max_ReplaceRepeated_Iterations)
throw LimitationException("Maximum number of iterations reached.");
}
expression->AssignLeaf(0);
expression->Evaluate(calculator, recursions);
}
/**
* Print benchmark results.
*/
void logResults(std::vector<Result>& results, unsigned long time)
{
typedef OpenANN::FloatingPointFormatter fmt;
OpenANN::Logger resultLogger(OpenANN::Logger::CONSOLE);
resultLogger << "\t\tCorrect\t\tAccuracy\tTime/ms\t\tIterations\n";
Eigen::VectorXd correct(results.size());
Eigen::VectorXd accuracy(results.size());
Eigen::VectorXd iterations(results.size());
for(unsigned i = 0; i < results.size(); i++)
{
correct(i) = (double) results[i].correct;
accuracy(i) = results[i].accuracy;
iterations(i) = results[i].iterations;
}
double correctMean = correct.mean();
double accuracyMean = accuracy.mean();
double iterationsMean = iterations.mean();
double correctMin = correct.minCoeff();
double accuracyMin = accuracy.minCoeff();
double iterationsMin = iterations.minCoeff();
double correctMax = correct.maxCoeff();
double accuracyMax = accuracy.maxCoeff();
double iterationsMax = iterations.maxCoeff();
for(unsigned i = 0; i < results.size(); i++)
{
correct(i) -= correctMean;
accuracy(i) -= accuracyMean;
iterations(i) -= iterationsMean;
}
correct = correct.cwiseAbs();
accuracy = accuracy.cwiseAbs();
iterations = iterations.cwiseAbs();
double correctStdDev = std::sqrt(correct.mean());
double accuracyStdDev = std::sqrt(accuracy.mean());
double iterationsStdDev = std::sqrt(iterations.mean());
resultLogger << "Mean+-StdDev\t";
resultLogger << fmt(correctMean, 3) << "+-" << fmt(correctStdDev, 3) << "\t"
<< fmt(accuracyMean, 3) << "+-" << fmt(accuracyStdDev, 3) << "\t"
<< (int)((double)time / (double)results.size()) << "\t\t"
<< iterationsMean << "+-" << fmt(iterationsStdDev, 3) << "\n";
resultLogger << "[min,max]\t";
resultLogger << "[" << correctMin << "," << correctMax << "]\t"
<< "[" << fmt(accuracyMin, 3) << "," << fmt(accuracyMax, 3) << "]\t\t\t"
<< "[" << (int) iterationsMin << "," << (int) iterationsMax << "]\n\n";
}
int main() {
/*
* Вычисляем ширину эпсилон.
*/
int epswidth = ceil(-log10(REAL_EPSILON));
printf(
"target_1 = 0, x = %.*f; dichotomy, x ∈ [%f, %f]\n",
epswidth,
dichotomy(target_1, TARGET_1_A, TARGET_1_B),
TARGET_1_A, TARGET_1_B
);
printf(
"target_1 = 0, x = %.*f; iterations, x ∈ [%f, %f]\n",
epswidth,
iterations(target_1_xfx, TARGET_1_A, TARGET_1_B),
TARGET_1_A, TARGET_1_B
);
printf(
"target_1 = 0, x = %.*f; newton, x ∈ [%f, %f]\n",
epswidth,
newton(target_1, target_1_derivative, TARGET_1_A, TARGET_1_B),
TARGET_1_A, TARGET_1_B
);
printf(
"target_2 = 0, x = %.*f; dichotomy, x ∈ [%f, %f]\n",
epswidth,
dichotomy(target_2, TARGET_2_A, TARGET_2_B),
TARGET_2_A, TARGET_2_B
);
printf(
"target_2 = 0, x = %.*f; iterations, x ∈ [%f, %f]\n",
epswidth,
iterations(target_2_xfx, TARGET_2_A, TARGET_2_B),
TARGET_2_A, TARGET_2_B
);
printf(
"target_2 = 0, x = %.*f; newton, x ∈ [%f, %f]\n",
epswidth,
newton(target_2, target_2_derivative, TARGET_2_A, TARGET_2_B),
TARGET_2_A, TARGET_2_B
);
return (0);
}
duration_type overhead_clock()
{
std::size_t iterations( 10);
std::vector< boost::uint64_t > overhead( iterations, 0);
for ( std::size_t i = 0; i < iterations; ++i)
std::generate(
overhead.begin(), overhead.end(),
clock_overhead() );
BOOST_ASSERT( overhead.begin() != overhead.end() );
return duration_type( std::accumulate( overhead.begin(), overhead.end(), 0) / iterations);
}
bool fractal_base::process_line(const line &l) {
const vec_ull start = l.start_point;
const vec_ull end = l.end_point;
// handle lines containing only a single pixel
const vec_ull diff = ((start - end) != vec_ull{0, 0}) ? (end - start).unitV() : vec_ull{0, 0};
const size_t length = (end - start).norm();
bool out = true;
for (size_t i = 0; i <= length; i++) {
vec_ull pos = start + diff * i;
if (iterations(pos) == NOT_DEFINED) {
// imaginary axis is different because it points opposite our +y axis
complex complex_pos = index_to_complex(pos);
iterations(pos) = iterate_cell(complex_pos);
}
if (iterations(pos) != iterations(start)) {
out = false;
}
}
return out;
}
inline
zeit_t overhead_zeit()
{
std::size_t iterations( 10);
std::vector< zeit_t > overhead( iterations, 0);
for ( std::size_t i( 0); i < iterations; ++i)
std::generate(
overhead.begin(), overhead.end(),
measure_zeit() );
BOOST_ASSERT( overhead.begin() != overhead.end() );
return std::accumulate( overhead.begin(), overhead.end(), 0) / iterations;
}
split_rectangle fractal_base::process_rectangle(rectangle r) {
bool edges_equal = true;
for (auto &side : r.get_sides()) {
// pre-calculate to avoid lazy evaluation skipping
bool res = process_line(side);
edges_equal = edges_equal && res;
}
size_t shortest_edge = std::min(r.xmax - r.xmin, r.ymax - r.ymin);
if (!edges_equal && shortest_edge > 1) {
// must be careful how we round up and down because rectangles are inclusive on all bounds
return {true,
{
rectangle(r.xmin, (r.xmin + r.xmax) / 2, r.ymin, (r.ymin + r.ymax) / 2),
rectangle((r.xmin + r.xmax) / 2, r.xmax, r.ymin, (r.ymin + r.ymax) / 2),
rectangle(r.xmin, (r.xmin + r.xmax) / 2, (r.ymin + r.ymax) / 2, r.ymax),
rectangle((r.xmin + r.xmax) / 2, r.xmax, (r.ymin + r.ymax) / 2, r.ymax),
},
};
} else if (edges_equal /*&& shortest_edge < longest_bound / 2*/) {
double iter_fill = iterations(r.xmin, r.ymin);
for (size_t i = r.xmin; i <= r.xmax; i++) {
for (size_t j = r.ymin; j <= r.ymax; j++) {
iterations(i, j) = iter_fill;
}
}
if (do_grid) {
for (size_t j = r.ymin; j < r.ymax; j++) {
grid_mask(r.xmin, j) = true;
}
for (size_t i = r.xmin; i < r.xmax; i++) {
grid_mask(i, r.ymin) = true;
}
}
}
return {false, {}};
}
int test_omp_for() {
std::vector<int> iterations(omp_get_max_threads(), 0);
int n = 100;
#pragma omp parallel shared(iterations, n)
{
#pragma omp for
for (int i = 0; i < n; i++) {
iterations[omp_get_thread_num()]++;
}
}
print_iterations(iterations);
return 0;
}
void seissol::checkpoint::mpio::Wavefield::write(const void* header, size_t headerSize)
{
SCOREP_USER_REGION("CheckPoint_write", SCOREP_USER_REGION_TYPE_FUNCTION);
logInfo(rank()) << "Checkpoint backend: Writing.";
// Write the header
writeHeader(header, headerSize);
// Save data
SCOREP_USER_REGION_DEFINE(r_write_wavefield);
SCOREP_USER_REGION_BEGIN(r_write_wavefield, "checkpoint_write_wavefield", SCOREP_USER_REGION_TYPE_COMMON);
checkMPIErr(setDataView(file()));
unsigned int totalIter = totalIterations();
unsigned int iter = iterations();
unsigned int count = dofsPerIteration();
if (m_useLargeBuffer) {
totalIter = (totalIter + sizeof(real) - 1) / sizeof(real);
iter = (iter + sizeof(real) - 1) / sizeof(real);
count *= sizeof(real);
}
unsigned long offset = 0;
for (unsigned int i = 0; i < totalIter; i++) {
if (i == iter-1)
// Last iteration
count = numDofs() - (iter-1) * count;
checkMPIErr(MPI_File_write_all(file(), const_cast<real*>(&dofs()[offset]), count, MPI_DOUBLE, MPI_STATUS_IGNORE));
if (i < iter-1)
offset += count;
// otherwise we just continue writing the last chunk over and over
else if (i != totalIter-1)
checkMPIErr(MPI_File_seek(file(), -count * sizeof(real), MPI_SEEK_CUR));
}
SCOREP_USER_REGION_END(r_write_wavefield);
// Finalize the checkpoint
finalizeCheckpoint();
logInfo(rank()) << "Checkpoint backend: Writing. Done.";
}
void seissol::checkpoint::h5::Wavefield::load(double &time, int ×tepWavefield, real* dofs)
{
logInfo(rank()) << "Loading wave field checkpoint";
seissol::checkpoint::CheckPoint::setLoaded();
hid_t h5file = open(linkFile());
checkH5Err(h5file);
// Attributes
hid_t h5attr = H5Aopen(h5file, "time", H5P_DEFAULT);
checkH5Err(h5attr);
checkH5Err(H5Aread(h5attr, H5T_NATIVE_DOUBLE, &time));
checkH5Err(H5Aclose(h5attr));
h5attr = H5Aopen(h5file, "timestep_wavefield", H5P_DEFAULT);
checkH5Err(h5attr);
checkH5Err(H5Aread(h5attr, H5T_NATIVE_INT, ×tepWavefield));
checkH5Err(H5Aclose(h5attr));
// Get dataset
hid_t h5data = H5Dopen(h5file, "values", H5P_DEFAULT);
checkH5Err(h5data);
hid_t h5fSpace = H5Dget_space(h5data);
checkH5Err(h5fSpace);
// Read the data
unsigned int offset = 0;
hsize_t fStart = fileOffset();
hsize_t count = dofsPerIteration();
hid_t h5memSpace = H5Screate_simple(1, &count, 0L);
checkH5Err(h5memSpace);
checkH5Err(H5Sselect_all(h5memSpace));
for (unsigned int i = 0; i < totalIterations()-1; i++) {
checkH5Err(H5Sselect_hyperslab(h5fSpace, H5S_SELECT_SET, &fStart, 0L, &count, 0L));
checkH5Err(H5Dread(h5data, H5T_NATIVE_DOUBLE, h5memSpace, h5fSpace,
h5XferList(), &dofs[offset]));
// We are finished in less iterations, read data twice
// so everybody needs the same number of iterations
if (i < iterations()-1) {
fStart += count;
offset += count;
}
}
checkH5Err(H5Sclose(h5memSpace));
// Read reminding data in the last iteration
count = numDofs() - (iterations() - 1) * count;
h5memSpace = H5Screate_simple(1, &count, 0L);
checkH5Err(h5memSpace);
checkH5Err(H5Sselect_all(h5memSpace));
checkH5Err(H5Sselect_hyperslab(h5fSpace, H5S_SELECT_SET, &fStart, 0L, &count, 0L));
checkH5Err(H5Dread(h5data, H5T_NATIVE_DOUBLE, h5memSpace, h5fSpace,
h5XferList(), &dofs[offset]));
checkH5Err(H5Sclose(h5memSpace));
checkH5Err(H5Sclose(h5fSpace));
checkH5Err(H5Dclose(h5data));
checkH5Err(H5Fclose(h5file));
}
void seissol::checkpoint::h5::Wavefield::write(double time, int waveFieldTimeStep)
{
EPIK_TRACER("CheckPoint_write");
SCOREP_USER_REGION("CheckPoint_write", SCOREP_USER_REGION_TYPE_FUNCTION);
logInfo(rank()) << "Writing check point.";
EPIK_USER_REG(r_header, "checkpoint_write_header");
SCOREP_USER_REGION_DEFINE(r_header);
EPIK_USER_START(r_header);
SCOREP_USER_REGION_BEGIN(r_header, "checkpoint_write_header", SCOREP_USER_REGION_TYPE_COMMON);
// Time
checkH5Err(H5Awrite(m_h5time[odd()], H5T_NATIVE_DOUBLE, &time));
// Wavefield writer
checkH5Err(H5Awrite(m_h5timestepWavefield[odd()], H5T_NATIVE_INT, &waveFieldTimeStep));
EPIK_USER_END(r_header);
SCOREP_USER_REGION_END(r_header);
// Save data
EPIK_USER_REG(r_write_wavefield, "checkpoint_write_wavefield");
SCOREP_USER_REGION_DEFINE(r_write_wavefield);
EPIK_USER_START(r_write_wavefield);
SCOREP_USER_REGION_BEGIN(r_write_wavefield, "checkpoint_write_wavefield", SCOREP_USER_REGION_TYPE_COMMON);
// Write the wave field
unsigned int offset = 0;
hsize_t fStart = fileOffset();
hsize_t count = dofsPerIteration();
hid_t h5memSpace = H5Screate_simple(1, &count, 0L);
checkH5Err(h5memSpace);
checkH5Err(H5Sselect_all(h5memSpace));
for (unsigned int i = 0; i < totalIterations()-1; i++) {
checkH5Err(H5Sselect_hyperslab(m_h5fSpaceData, H5S_SELECT_SET, &fStart, 0L, &count, 0L));
checkH5Err(H5Dwrite(m_h5data[odd()], H5T_NATIVE_DOUBLE, h5memSpace, m_h5fSpaceData,
h5XferList(), &const_cast<real*>(dofs())[offset]));
// We are finished in less iterations, read data twice
// so everybody needs the same number of iterations
if (i < iterations()-1) {
fStart += count;
offset += count;
}
}
checkH5Err(H5Sclose(h5memSpace));
// Save reminding data in the last iteration
count = numDofs() - (iterations() - 1) * count;
h5memSpace = H5Screate_simple(1, &count, 0L);
checkH5Err(h5memSpace);
checkH5Err(H5Sselect_all(h5memSpace));
checkH5Err(H5Sselect_hyperslab(m_h5fSpaceData, H5S_SELECT_SET, &fStart, 0L, &count, 0L));
checkH5Err(H5Dwrite(m_h5data[odd()], H5T_NATIVE_DOUBLE, h5memSpace, m_h5fSpaceData,
h5XferList(), &dofs()[offset]));
checkH5Err(H5Sclose(h5memSpace));
EPIK_USER_END(r_write_wavefield);
SCOREP_USER_REGION_END(r_write_wavefield);
// Finalize the checkpoint
finalizeCheckpoint();
logInfo(rank()) << "Writing check point. Done.";
}
int main (int argc, char **argv)
{
FILE *fp_out, *fp_f1plus, *fp_f1min;
FILE *fp_gmin, *fp_gplus, *fp_f2, *fp_pmin;
int i, j, l, ret, nshots, Nsyn, nt, nx, nts, nxs, ngath;
int size, n1, n2, ntap, tap, di, ntraces, nb, ib;
int nw, nw_low, nw_high, nfreq, *xnx, *xnxsyn, *synpos;
int reci, mode, ixa, ixb, n2out, verbose, ntfft;
int iter, niter, niterh, tracf, *muteW, pad, nt0, ampest, *hmuteW, *hxnxsyn;
int hw, smooth, above, shift, *ixpossyn, npossyn, ix, first=1;
float fmin, fmax, *tapersh, *tapersy, fxf, dxf, fxs2, *xsrc, *xrcv, *zsyn, *zsrc, *xrcvsyn;
float *hzsyn, *hxsyn, *hxrcvsyn, *hG_d, xloc, zloc, *HomG;
double t0, t1, t2, t3, tsyn, tread, tfft, tcopy, energyNi, *J;
float d1, d2, f1, f2, fxs, ft, fx, *xsyn, dxsrc, Q, f0, *Costdet;
float *green, *f2p, *pmin, *G_d, dt, dx, dxs, scl, mem, *Image, *Image2;
float *f1plus, *f1min, *iRN, *Ni, *trace, *Gmin, *Gplus, *Gm0;
float xmin, xmax, weight, tsq, *Gd, *amp, bstart, bend, db, *bdet, bp, b, bmin;
complex *Refl, *Fop, *cshot;
char *file_tinv, *file_shot, *file_green, *file_iter, *file_wav, *file_ray, *file_amp, *file_img, *file_cp, *file_rays, *file_amps;
char *file_f1plus, *file_f1min, *file_gmin, *file_gplus, *file_f2, *file_pmin, *wavtype, *wavtype2, *file_homg, *file_tinvs;
segy *hdrs_im, *hdrs_homg;
WavePar WP,WPs;
modPar mod;
recPar rec;
srcPar src;
shotPar shot;
rayPar ray;
initargs(argc, argv);
requestdoc(1);
tsyn = tread = tfft = tcopy = 0.0;
t0 = wallclock_time();
if (!getparstring("file_img", &file_img)) file_img = "img.su";
if (!getparstring("file_homg", &file_homg)) file_homg = NULL;
if (!getparstring("file_shot", &file_shot)) file_shot = NULL;
if (!getparstring("file_tinv", &file_tinv)) file_tinv = NULL;
if (!getparstring("file_tinvs", &file_tinvs)) file_tinvs = NULL;
if (!getparstring("file_f1plus", &file_f1plus)) file_f1plus = NULL;
if (!getparstring("file_f1min", &file_f1min)) file_f1min = NULL;
if (!getparstring("file_gplus", &file_gplus)) file_gplus = NULL;
if (!getparstring("file_gmin", &file_gmin)) file_gmin = NULL;
if (!getparstring("file_pplus", &file_f2)) file_f2 = NULL;
if (!getparstring("file_f2", &file_f2)) file_f2 = NULL;
if (!getparstring("file_pmin", &file_pmin)) file_pmin = NULL;
if (!getparstring("file_iter", &file_iter)) file_iter = NULL;
if (!getparstring("file_wav", &file_wav)) file_wav=NULL;
if (!getparstring("file_ray", &file_ray)) file_ray=NULL;
if (!getparstring("file_amp", &file_amp)) file_amp=NULL;
if (!getparstring("file_rays", &file_rays)) file_rays=NULL;
if (!getparstring("file_amps", &file_amps)) file_amps=NULL;
if (!getparstring("file_cp", &file_cp)) file_cp = NULL;
if (!getparint("verbose", &verbose)) verbose = 0;
if (file_tinv == NULL && file_shot == NULL)
verr("file_tinv and file_shot cannot be both input pipe");
if (!getparstring("file_green", &file_green)) {
if (verbose) vwarn("parameter file_green not found, assume pipe");
file_green = NULL;
}
if (!getparfloat("fmin", &fmin)) fmin = 0.0;
if (!getparfloat("fmax", &fmax)) fmax = 70.0;
if (!getparint("ixa", &ixa)) ixa = 0;
if (!getparint("ixb", &ixb)) ixb = ixa;
// if (!getparint("reci", &reci)) reci = 0;
reci=0; // source-receiver reciprocity is not yet fully build into the code
if (!getparfloat("weight", &weight)) weight = 1.0;
if (!getparfloat("tsq", &tsq)) tsq = 0.0;
if (!getparfloat("Q", &Q)) Q = 0.0;
if (!getparfloat("f0", &f0)) f0 = 0.0;
if (!getparint("tap", &tap)) tap = 0;
if (!getparint("ntap", &ntap)) ntap = 0;
if (!getparint("pad", &pad)) pad = 0;
if(!getparint("hw", &hw)) hw = 15;
if(!getparint("smooth", &smooth)) smooth = 5;
if(!getparint("above", &above)) above = 0;
if(!getparint("shift", &shift)) shift=12;
if(!getparint("ampest", &est)) ampest=0;
if(!getparint("nb", &nb)) nb=0;
if (!getparfloat("bstart", &bstart)) bstart = 1.0;
if (!getparfloat("bend", &bend)) bend = 1.0;
if (reci && ntap) vwarn("tapering influences the reciprocal result");
/* Reading in wavelet parameters */
if(!getparfloat("fpw", &WP.fp)) WP.fp = -1.0;
if(!getparfloat("fminw", &WP.fmin)) WP.fmin = 10.0;
if(!getparfloat("flefw", &WP.flef)) WP.flef = 20.0;
if(!getparfloat("frigw", &WP.frig)) WP.frig = 50.0;
if(!getparfloat("fmaxw", &WP.fmax)) WP.fmax = 60.0;
else WP.fp = -1;
if(!getparfloat("dbw", &WP.db)) WP.db = -20.0;
if(!getparfloat("t0w", &WP.t0)) WP.t0 = 0.0;
if(!getparint("shiftw", &WP.shift)) WP.shift = 0;
if(!getparint("invw", &WP.inv)) WP.inv = 0;
if(!getparfloat("epsw", &WP.eps)) WP.eps = 1.0;
if(!getparfloat("scalew", &WP.scale)) WP.scale = 1.0;
if(!getparint("scfftw", &WP.scfft)) WP.scfft = 1;
if(!getparint("cmw", &WP.cm)) WP.cm = 10;
if(!getparint("cnw", &WP.cn)) WP.cn = 1;
if(!getparint("wav", &WP.wav)) WP.wav = 0;
if(!getparstring("file_wav", &WP.file_wav)) WP.file_wav=NULL;
if(!getparstring("w", &wavtype)) strcpy(WP.w, "g2");
else strcpy(WP.w, wavtype);
if(!getparfloat("fpws", &WPs.fp)) WPs.fp = -1.0;
if(!getparfloat("fminws", &WPs.fmin)) WPs.fmin = 10.0;
if(!getparfloat("flefws", &WPs.flef)) WPs.flef = 20.0;
if(!getparfloat("frigws", &WPs.frig)) WPs.frig = 50.0;
if(!getparfloat("fmaxws", &WPs.fmax)) WPs.fmax = 60.0;
else WPs.fp = -1;
if(!getparfloat("dbw", &WPs.db)) WPs.db = -20.0;
if(!getparfloat("t0ws", &WPs.t0)) WPs.t0 = 0.0;
if(!getparint("shiftws", &WPs.shift)) WPs.shift = 0;
if(!getparint("invws", &WPs.inv)) WPs.inv = 0;
if(!getparfloat("epsws", &WPs.eps)) WPs.eps = 1.0;
if(!getparfloat("scalews", &WPs.scale)) WPs.scale = 1.0;
if(!getparint("scfftws", &WPs.scfft)) WPs.scfft = 1;
if(!getparint("cmws", &WPs.cm)) WPs.cm = 10;
if(!getparint("cnws", &WPs.cn)) WPs.cn = 1;
if(!getparint("wavs", &WPs.wav)) WPs.wav = 0;
if(!getparstring("file_wavs", &WPs.file_wav)) WPs.file_wav=NULL;
if(!getparstring("ws", &wavtype2)) strcpy(WPs.w, "g2");
else strcpy(WPs.w, wavtype2);
if(!getparint("niter", &niter)) niter = 10;
if(!getparint("niterh", &niterh)) niterh = niter;
/*================ Reading info about shot and initial operator sizes ================*/
ngath = 0; /* setting ngath=0 scans all traces; n2 contains maximum traces/gather */
if (file_ray!=NULL && file_tinv==NULL) {
ret = getFileInfo(file_ray, &n2, &n1, &ngath, &d1, &d2, &f2, &f1, &xmin, &xmax, &scl, &ntraces);
n1 = 1;
ntraces = n2*ngath;
scl = 0.0010;
d1 = -1.0*xmin;
xmin = -1.0*xmax;
xmax = d1;
WP.wav = 1;
WP.xloc = -123456.0;
WP.zloc = -123456.0;
synpos = (int *)calloc(ngath,sizeof(int));
shot.nz = 1;
shot.nx = ngath;
shot.n = shot.nx*shot.nz;
for (l=0; l<shot.nz; l++) {
for (j=0; j<shot.nx; j++) {
synpos[l*shot.nx+j] = j*shot.nz+l;
}
}
}
else if (file_ray==NULL && file_tinv==NULL) {
getParameters(&mod, &rec, &src, &shot, &ray, verbose);
n1 = 1;
n2 = rec.n;
ngath = shot.n;
d1 = mod.dt;
d2 = (rec.x[1]-rec.x[0])*mod.dx;
f1 = 0.0;
f2 = mod.x0+rec.x[0]*mod.dx;
xmin = mod.x0+rec.x[0]*mod.dx;
xmax = mod.x0+rec.x[rec.n-1]*mod.dx;
scl = 0.0010;
ntraces = n2*ngath;
WP.wav = 1;
WP.xloc = -123456.0;
WP.zloc = -123456.0;
synpos = (int *)calloc(ngath,sizeof(int));
for (l=0; l<shot.nz; l++) {
for (j=0; j<shot.nx; j++) {
synpos[l*shot.nx+j] = j*shot.nz+l;
}
}
}
else {
ret = getFileInfo(file_tinv, &n1, &n2, &ngath, &d1, &d2, &f1, &f2, &xmin, &xmax, &scl, &ntraces);
}
Nsyn = ngath;
nxs = n2;
nts = n1;
nt0 = n1;
dxs = d2;
fxs = f2;
ngath = 0; /* setting ngath=0 scans all traces; nx contains maximum traces/gather */
ret = getFileInfo(file_shot, &nt, &nx, &ngath, &d1, &dx, &ft, &fx, &xmin, &xmax, &scl, &ntraces);
nshots = ngath;
assert (nxs >= nshots);
if (!getparfloat("dt", &dt)) dt = d1;
ntfft = optncr(MAX(nt+pad, nts+pad));
nfreq = ntfft/2+1;
nw_low = (int)MIN((fmin*ntfft*dt), nfreq-1);
nw_low = MAX(nw_low, 1);
nw_high = MIN((int)(fmax*ntfft*dt), nfreq-1);
nw = nw_high - nw_low + 1;
scl = 1.0/((float)ntfft);
if (nb > 1) {
db = (bend-bstart)/((float)(nb-1));
}
else if (nb == 1) {
db = 0;
bend = bstart;
}
/*================ Allocating all data arrays ================*/
green = (float *)calloc(Nsyn*nxs*ntfft,sizeof(float));
f2p = (float *)calloc(Nsyn*nxs*ntfft,sizeof(float));
pmin = (float *)calloc(Nsyn*nxs*ntfft,sizeof(float));
f1plus = (float *)calloc(Nsyn*nxs*ntfft,sizeof(float));
f1min = (float *)calloc(Nsyn*nxs*ntfft,sizeof(float));
G_d = (float *)calloc(Nsyn*nxs*ntfft,sizeof(float));
muteW = (int *)calloc(Nsyn*nxs,sizeof(int));
trace = (float *)malloc(ntfft*sizeof(float));
ixpossyn = (int *)malloc(nxs*sizeof(int));
xrcvsyn = (float *)calloc(Nsyn*nxs,sizeof(float));
xsyn = (float *)malloc(Nsyn*sizeof(float));
zsyn = (float *)malloc(Nsyn*sizeof(float));
xnxsyn = (int *)calloc(Nsyn,sizeof(int));
tapersy = (float *)malloc(nxs*sizeof(float));
Refl = (complex *)malloc(nw*nx*nshots*sizeof(complex));
tapersh = (float *)malloc(nx*sizeof(float));
xsrc = (float *)calloc(nshots,sizeof(float));
zsrc = (float *)calloc(nshots,sizeof(float));
xrcv = (float *)calloc(nshots*nx,sizeof(float));
xnx = (int *)calloc(nshots,sizeof(int));
/*================ Read and define mute window based on focusing operator(s) ================*/
/* G_d = p_0^+ = G_d (-t) ~ Tinv */
WPs.nt = ntfft;
WPs.dt = dt;
WP.nt = ntfft;
WP.dt = dt;
if (file_ray!=NULL || file_cp!=NULL) {
makeWindow(WP, file_ray, file_amp, dt, xrcvsyn, xsyn, zsyn, xnxsyn,
Nsyn, nxs, ntfft, mode, muteW, G_d, hw, verbose);
}
else {
mode=-1; /* apply complex conjugate to read in data */
readTinvData(file_tinv, dt, xrcvsyn, xsyn, zsyn, xnxsyn,
Nsyn, nxs, ntfft, mode, muteW, G_d, hw, verbose);
}
/* reading data added zero's to the number of time samples to be the same as ntfft */
nts = ntfft;
/* define tapers to taper edges of acquisition */
if (tap == 1 || tap == 3) {
for (j = 0; j < ntap; j++)
tapersy[j] = (cos(PI*(j-ntap)/ntap)+1)/2.0;
for (j = ntap; j < nxs-ntap; j++)
tapersy[j] = 1.0;
for (j = nxs-ntap; j < nxs; j++)
tapersy[j] =(cos(PI*(j-(nxs-ntap))/ntap)+1)/2.0;
}
else {
for (j = 0; j < nxs; j++) tapersy[j] = 1.0;
}
if (tap == 1 || tap == 3) {
if (verbose) vmess("Taper for operator applied ntap=%d", ntap);
for (l = 0; l < Nsyn; l++) {
for (i = 0; i < nxs; i++) {
for (j = 0; j < nts; j++) {
G_d[l*nxs*nts+i*nts+j] *= tapersy[i];
}
}
}
}
/* check consistency of header values */
dxf = (xrcvsyn[nxs-1] - xrcvsyn[0])/(float)(nxs-1);
if (NINT(dxs*1e3) != NINT(fabs(dxf)*1e3)) {
vmess("dx in hdr.d1 (%.3f) and hdr.gx (%.3f) not equal",d2, dxf);
if (dxf != 0) dxs = fabs(dxf);
vmess("dx in operator => %f", dxs);
}
if (xrcvsyn[0] != 0 || xrcvsyn[1] != 0 ) fxs = xrcvsyn[0];
fxs2 = fxs + (float)(nxs-1)*dxs;
/*================ Reading shot records ================*/
mode=1;
readShotData(file_shot, xrcv, xsrc, zsrc, xnx, Refl, nw, nw_low, ngath, nx, nx, ntfft,
mode, weight, tsq, Q, f0, verbose);
tapersh = (float *)malloc(nx*sizeof(float));
if (tap == 2 || tap == 3) {
for (j = 0; j < ntap; j++)
tapersh[j] = (cos(PI*(j-ntap)/ntap)+1)/2.0;
for (j = ntap; j < nx-ntap; j++)
tapersh[j] = 1.0;
for (j = nx-ntap; j < nx; j++)
tapersh[j] =(cos(PI*(j-(nx-ntap))/ntap)+1)/2.0;
}
else {
for (j = 0; j < nx; j++) tapersh[j] = 1.0;
}
if (tap == 2 || tap == 3) {
if (verbose) vmess("Taper for shots applied ntap=%d", ntap);
for (l = 0; l < nshots; l++) {
for (j = 1; j < nw; j++) {
for (i = 0; i < nx; i++) {
Refl[l*nx*nw+j*nx+i].r *= tapersh[i];
Refl[l*nx*nw+j*nx+i].i *= tapersh[i];
}
}
}
}
free(tapersh);
/* check consistency of header values */
fxf = xsrc[0];
if (nx > 1) dxf = (xrcv[0] - xrcv[nx-1])/(float)(nx-1);
else dxf = d2;
if (NINT(dx*1e3) != NINT(fabs(dxf)*1e3)) {
vmess("dx in hdr.d1 (%.3f) and hdr.gx (%.3f) not equal",dx, dxf);
if (dxf != 0) dx = fabs(dxf);
else verr("gx hdrs not set");
vmess("dx used => %f", dx);
}
dxsrc = (float)xsrc[1] - xsrc[0];
if (dxsrc == 0) {
vwarn("sx hdrs are not filled in!!");
dxsrc = dx;
}
/*================ Check the size of the files ================*/
if (NINT(dxsrc/dx)*dx != NINT(dxsrc)) {
vwarn("source (%.2f) and receiver step (%.2f) don't match",dxsrc,dx);
if (reci == 2) vwarn("step used from operator (%.2f) ",dxs);
}
di = NINT(dxf/dxs);
if ((NINT(di*dxs) != NINT(dxf)) && verbose)
vwarn("dx in receiver (%.2f) and operator (%.2f) don't match",dx,dxs);
if (nt != nts)
vmess("Time samples in shot (%d) and focusing operator (%d) are not equal",nt, nts);
if (verbose) {
vmess("Number of focusing operators = %d", Nsyn);
vmess("Number of receivers in focusop = %d", nxs);
vmess("number of shots = %d", nshots);
vmess("number of receiver/shot = %d", nx);
vmess("first model position = %.2f", fxs);
vmess("last model position = %.2f", fxs2);
vmess("first source position fxf = %.2f", fxf);
vmess("source distance dxsrc = %.2f", dxsrc);
vmess("last source position = %.2f", fxf+(nshots-1)*dxsrc);
vmess("receiver distance dxf = %.2f", dxf);
vmess("direction of increasing traces = %d", di);
vmess("number of time samples (nt,nts) = %d (%d,%d)", ntfft, nt, nts);
vmess("time sampling = %e ", dt);
if (ampest > 0) vmess("Amplitude correction estimation is switched on");
if (nb > 0) vmess("Scaling estimation in %d step(s) from %.3f to %.3f (db=%.3f)",nb,bstart,bend,db);
if (file_green != NULL) vmess("Green output file = %s ", file_green);
if (file_gmin != NULL) vmess("Gmin output file = %s ", file_gmin);
if (file_gplus != NULL) vmess("Gplus output file = %s ", file_gplus);
if (file_pmin != NULL) vmess("Pmin output file = %s ", file_pmin);
if (file_f2 != NULL) vmess("f2 (=pplus) output file = %s ", file_f2);
if (file_f1min != NULL) vmess("f1min output file = %s ", file_f1min);
if (file_f1plus != NULL)vmess("f1plus output file = %s ", file_f1plus);
if (file_iter != NULL) vmess("Iterations output file = %s ", file_iter);
}
/*================ initializations ================*/
if (ixa || ixb) n2out = ixa + ixb + 1;
else if (reci) n2out = nxs;
else n2out = nshots;
mem = Nsyn*n2out*ntfft*sizeof(float)/1048576.0;
if (verbose) {
vmess("number of output traces = %d", n2out);
vmess("number of output samples = %d", ntfft);
vmess("Size of output data/file = %.1f MB", mem);
}
//memcpy(Ni, G_d, Nsyn*nxs*ntfft*sizeof(float));
if (file_homg!=NULL) {
hG_d = (float *)calloc(nxs*ntfft,sizeof(float));
hmuteW = (int *)calloc(nxs,sizeof(int));
hxrcvsyn = (float *)calloc(nxs,sizeof(float));
hxsyn = (float *)calloc(1,sizeof(float));
hzsyn = (float *)calloc(1,sizeof(float));
hxnxsyn = (int *)calloc(1,sizeof(int));
cshot = (complex *)calloc(nxs*nfreq,sizeof(complex));
if(!getparfloat("xloc", &WPs.xloc)) WPs.xloc = -123456.0;
if(!getparfloat("zloc", &WPs.zloc)) WPs.zloc = -123456.0;
if (WPs.xloc == -123456.0 && WPs.zloc == -123456.0) file_cp = NULL;
if (WPs.xloc == -123456.0) WPs.xloc = 0.0;
if (WPs.zloc == -123456.0) WPs.zloc = 0.0;
xloc = WPs.xloc;
zloc = WPs.zloc;
ngath = 1;
if (file_rays!=NULL || file_cp!=NULL) {
WPs.wav=1;
makeWindow(WPs, file_rays, file_amps, dt, hxrcvsyn, hxsyn, hzsyn, hxnxsyn, ngath, nxs, ntfft, mode, hmuteW, hG_d, hw, verbose);
}
else {
mode=-1; /* apply complex conjugate to read in data */
readTinvData(file_tinvs, dt, hxrcvsyn, hxsyn, hzsyn, hxnxsyn,
ngath, nxs, ntfft, mode, hmuteW, hG_d, hw, verbose);
}
WPs.xloc = -123456.0;
WPs.zloc = -123456.0;
if (tap == 1 || tap == 3) {
if (verbose) vmess("Taper for operator applied ntap=%d", ntap);
for (i = 0; i < nxs; i++) {
for (j = 0; j < nts; j++) {
hG_d[i*nts+j] *= tapersy[i];
}
}
}
ngath = omp_get_max_threads();
synthesisPosistions(nx, nt, nxs, nts, dt, hxsyn, 1, xrcv, xsrc, fxs2, fxs,
dxs, dxsrc, dx, ixa, ixb, reci, nshots, ixpossyn, &npossyn, verbose);
iterations(Refl,nx,nt,nxs,nts,dt,hxsyn,1,xrcv,xsrc,fxs2,fxs,dxs,dxsrc,dx,ixa,ixb,
ntfft,nw,nw_low,nw_high,mode,reci,nshots,ixpossyn,npossyn,pmin,f1min,f1plus,
f2p,hG_d,hmuteW,smooth,shift,above,pad,nt0,&first,niterh,verbose);
/* compute full Green's function G = int R * f2(t) + f2(-t) = Pplus + Pmin */
for (i = 0; i < npossyn; i++) {
j = 0;
/* set green to zero if mute-window exceeds nt/2 */
if (hmuteW[ixpossyn[i]] >= nts/2) {
memset(&green[i*nts],0, sizeof(float)*nt);
continue;
}
green[i*nts+j] = f2p[i*nts+j] + pmin[i*nts+j];
for (j = 1; j < nts; j++) {
green[i*nts+j] = f2p[i*nts+nts-j] + pmin[i*nts+j];
}
}
applyMute(green, hmuteW, smooth, 4, 1, nxs, nts, ixpossyn, npossyn, shift, pad, nt0);
omp_set_num_threads(ngath);
/* Transform the green position to the frequency domain */
/*for (i = 0; i < npossyn; i++) {
rc1fft(&green[i*nts],&cshot[i*nfreq],ntfft,-1);
}*/
//free(hG_d);free(hmuteW);free(hxrcvsyn);
free(hmuteW);free(hxrcvsyn);
free(hxsyn);free(hzsyn);free(hxnxsyn);free(cshot);
}
/* dry-run of synthesis to get all x-positions calcalated by the integration */
synthesisPosistions(nx, nt, nxs, nts, dt, xsyn, Nsyn, xrcv, xsrc, fxs2, fxs,
dxs, dxsrc, dx, ixa, ixb, reci, nshots, ixpossyn, &npossyn, verbose);
if (verbose) {
vmess("synthesisPosistions: nshots=%d npossyn=%d", nshots, npossyn);
}
t1 = wallclock_time();
tread = t1-t0;
iterations(Refl,nx,nt,nxs,nts,dt,xsyn,Nsyn,xrcv,xsrc,fxs2,fxs,dxs,dxsrc,dx,ixa,ixb,
ntfft,nw,nw_low,nw_high,mode,reci,nshots,ixpossyn,npossyn,pmin,f1min,f1plus,
f2p,G_d,muteW,smooth,shift,above,pad,nt0,&first,niter,verbose);
/*if (niter==0) {
for (l = 0; l < Nsyn; l++) {
for (i = 0; i < npossyn; i++) {
j = 0;
ix = ixpossyn[i];
f2p[l*nxs*nts+i*nts+j] = G_d[l*nxs*nts+ix*nts+j];
f1plus[l*nxs*nts+i*nts+j] = G_d[l*nxs*nts+ix*nts+j];
for (j = 1; j < nts; j++) {
f2p[l*nxs*nts+i*nts+j] = G_d[l*nxs*nts+ix*nts+j];
f1plus[l*nxs*nts+i*nts+j] = G_d[l*nxs*nts+ix*nts+j];
}
}
}
}*/
if (niterh==0) {
for (l = 0; l < Nsyn; l++) {
for (i = 0; i < npossyn; i++) {
j = 0;
ix = ixpossyn[i];
green[i*nts+j] = hG_d[ix*nts+j];
for (j = 1; j < nts; j++) {
green[i*nts+j] = hG_d[ix*nts+nts-j];
}
}
}
}
if (file_img!=NULL) {
/*================ set variables for output data ================*/
hdrs_im = (segy *) calloc(shot.nx,sizeof(segy));
if (hdrs_im == NULL) verr("allocation for hdrs_out");
Image = (float *)calloc(Nsyn,sizeof(float));
first=0;
imaging(Image,WPs,Refl,nx,nt,nxs,nts,dt,xsyn,Nsyn,xrcv,xsrc,fxs2,fxs,dxs,dxsrc,dx,ixa,ixb,
ntfft,nw,nw_low,nw_high,mode,reci,nshots,ixpossyn,npossyn,pmin,f1min,f1plus,
f2p,G_d,muteW,smooth,shift,above,pad,nt0,synpos,verbose);
/*============= write output files ================*/
fp_out = fopen(file_img, "w+");
for (i = 0; i < shot.nx; i++) {
hdrs_im[i].fldr = 1;
hdrs_im[i].tracl = 1;
hdrs_im[i].tracf = i+1;
hdrs_im[i].scalco = -1000;
hdrs_im[i].scalel = -1000;
hdrs_im[i].sdepth = 0;
hdrs_im[i].trid = 1;
hdrs_im[i].ns = shot.nz;
hdrs_im[i].trwf = shot.nx;
hdrs_im[i].ntr = hdrs_im[i].fldr*hdrs_im[i].trwf;
hdrs_im[i].f1 = zsyn[0];
hdrs_im[i].f2 = xsyn[0];
hdrs_im[i].dt = dt*(1E6);
hdrs_im[i].d1 = (float)zsyn[shot.nx]-zsyn[0];
hdrs_im[i].d2 = (float)xsyn[1]-xsyn[0];
hdrs_im[i].sx = (int)roundf(xsyn[0] + (i*hdrs_im[i].d2));
hdrs_im[i].gx = (int)roundf(xsyn[0] + (i*hdrs_im[i].d2));
hdrs_im[i].offset = (hdrs_im[i].gx - hdrs_im[i].sx)/1000.0;
}
ret = writeData(fp_out, &Image[0], hdrs_im, shot.nz, shot.nx);
if (ret < 0 ) verr("error on writing output file.");
fclose(fp_out);
}
if (file_homg!=NULL) {
/*================ set variables for output data ================*/
hdrs_homg = (segy *) calloc(shot.nx,sizeof(segy));
if (hdrs_homg == NULL) verr("allocation for hdrs_out");
HomG = (float *)calloc(Nsyn*ntfft,sizeof(float));
homogeneousg(HomG,green,Refl,nx,nt,nxs,nts,dt,xsyn,Nsyn,xrcv,xsrc,fxs2,fxs,dxs,dxsrc,dx,ixa,ixb,
ntfft,nw,nw_low,nw_high,mode,reci,nshots,ixpossyn,npossyn,pmin,f1min,f1plus,
f2p,G_d,muteW,smooth,shift,above,pad,nt0,synpos,verbose);
/*============= write output files ================*/
fp_out = fopen(file_homg, "w+");
for (j = 0; j < ntfft; j++) {
for (i = 0; i < shot.nx; i++) {
hdrs_homg[i].fldr = j+1;
hdrs_homg[i].tracl = j*shot.nx+i+1;
hdrs_homg[i].tracf = i+1;
hdrs_homg[i].scalco = -1000;
hdrs_homg[i].scalel = -1000;
hdrs_homg[i].sdepth = (int)(zloc*1000.0);
hdrs_homg[i].trid = 1;
hdrs_homg[i].ns = shot.nz;
hdrs_homg[i].trwf = shot.nx;
hdrs_homg[i].ntr = hdrs_homg[i].fldr*hdrs_homg[i].trwf;
hdrs_homg[i].f1 = zsyn[0];
hdrs_homg[i].f2 = xsyn[0];
hdrs_homg[i].dt = dt*(1E6);
hdrs_homg[i].d1 = (float)zsyn[shot.nx]-zsyn[0];
hdrs_homg[i].d2 = (float)xsyn[1]-xsyn[0];
hdrs_homg[i].sx = (int)roundf(xsyn[0] + (i*hdrs_homg[i].d2));
hdrs_homg[i].gx = (int)roundf(xsyn[0] + (i*hdrs_homg[i].d2));
hdrs_homg[i].offset = (hdrs_homg[i].gx - hdrs_homg[i].sx)/1000.0;
}
ret = writeData(fp_out, &HomG[j*shot.n], hdrs_homg, shot.nz, shot.nx);
if (ret < 0 ) verr("error on writing output file.");
}
fclose(fp_out);
}
if (verbose) {
t1 = wallclock_time();
vmess("and CPU-time write data = %.3f", t1-t2);
}
free(tapersy);
exit(0);
}
QString VESPERSTimeScanConfiguration::headerText() const
{
QString header("Configuration of the Scan\n\n");
header.append(fluorescenceHeaderString(fluorescenceDetector()));
header.append(incomingChoiceHeaderString(incomingChoice()));
header.append(regionsOfInterestHeaderString(regionsOfInterest()) % "\n");
header.append(ccdDetectorHeaderString(ccdDetector()));
header.append("\n");
header.append(QString("Acquired for %1 seconds every %2 seconds %3 times.\n").arg(time()).arg(timePerAcquisition()).arg(iterations()));
return header;
}
