struct orgGenes *orgGenesNew(char *srcDb, char *genePredFile)
/* construct a new orgGenes object from the specified file */
{
struct orgGenes *genes;
AllocVar(genes);
genes->srcDb = cloneString(srcDb);
genes->bins = chromBinsNew(NULL);
genes->memPool = lmInit(1024*1024);
loadGenes(genes, genePredFile);
return genes;
}
void hgLoadGenePred(char *db, char *table, int numGenePreds, char **genePredFiles)
/* hgLoadGenePred - Load up a mySQL database genePred table. */
{
struct genePred *genes = loadGenes(numGenePreds, genePredFiles);
struct sqlConnection *conn = sqlConnect(db);
char *tmpDir = ".";
FILE *tabFh = hgCreateTabFile(tmpDir, table);
mkTabFile(db, genes, tabFh);
genePredFreeList(&genes);
setupTable(db, conn, table);
hgLoadTabFile(conn, tmpDir, table, &tabFh);
sqlDisconnect(&conn);
hgRemoveTabFile(tmpDir, table);
}
