// divide o vetor entre os dois filhos
void Node::divide_v1(vector<int>& numbers)
{
//printf("%d vai dividir %lu números\n", rank, numbers.size());
// calcula o rank do filho à esquerda
const int left_rank = rank * 2 + 1;
// calcula o rank do filho à direita
const int right_rank = rank * 2 + 2;
vector<int> resto(numbers.begin() + conquer_at + 1, numbers.end());
// printf("%d pegou %lu números para si e sobraram %lu\n", rank, meu.size(), resto.size());
// calcula a posição da metade do vetor
const size_t half_size = resto.size() / 2;
// cria dois vetores com cada metade do vetor original
vector<int> left(resto.begin(), resto.begin() + half_size);
vector<int> right(resto.begin() + half_size, resto.end());
// printf("%d vai enviar %lu números para %d e %lu para %d\n", rank, left.size(), left_rank, right.size(), right_rank);
// envia os vetores para os nodos filhos
sendToNode(left_rank, left);
sendToNode(right_rank, right);
// espera um retorno dos nodos filhos
receiveFromNode(left_rank, left);
receiveFromNode(right_rank, right);
// mescla os retornos dos nodos filhos no vetor original
mergeVectors(left, right, resto);
}
int32_t SegmentMerger::merge() {
int32_t value = mergeFields();
mergeTerms();
mergeNorms();
if (fieldInfos->hasVectors())
mergeVectors();
return value;
}
int32_t SegmentMerger::merge(bool mergeDocStores) {
this->mergeDocStores = mergeDocStores;
// NOTE: it's important to add calls to
// checkAbort.work(...) if you make any changes to this
// method that will spend alot of time. The frequency
// of this check impacts how long
// IndexWriter.close(false) takes to actually stop the
// threads.
mergedDocs = mergeFields();
mergeTerms();
mergeNorms();
if (mergeDocStores && fieldInfos->hasVectors())
mergeVectors();
return mergedDocs;
}
int Rarefact::getSharedCurve(float percentFreq = 0.01, int nIters = 1000){
try {
SharedRarefactionCurveData* rcd = new SharedRarefactionCurveData();
label = lookup[0]->getLabel();
//register the displays
for(int i=0;i<displays.size();i++){
rcd->registerDisplay(displays[i]);
}
//if jumble is false all iters will be the same
if (m->jumble == false) { nIters = 1; }
//convert freq percentage to number
int increment = 1;
if (percentFreq < 1.0) { increment = numSeqs * percentFreq; }
else { increment = percentFreq; }
for(int iter=0;iter<nIters;iter++){
for(int i=0;i<displays.size();i++){
displays[i]->init(label);
}
if (m->jumble == true) {
//randomize the groups
random_shuffle(lookup.begin(), lookup.end());
}
//make merge the size of lookup[0]
SharedRAbundVector* merge = new SharedRAbundVector(lookup[0]->size());
//make copy of lookup zero
for(int i = 0; i<lookup[0]->size(); i++) {
merge->set(i, lookup[0]->getAbundance(i), "merge");
}
vector<SharedRAbundVector*> subset;
//send each group one at a time
for (int k = 0; k < lookup.size(); k++) {
if (m->control_pressed) { delete merge; delete rcd; return 0; }
subset.clear(); //clears out old pair of sharedrabunds
//add in new pair of sharedrabunds
subset.push_back(merge); subset.push_back(lookup[k]);
rcd->updateSharedData(subset, k+1, numGroupComb);
mergeVectors(merge, lookup[k]);
}
//resets output files
for(int i=0;i<displays.size();i++){
displays[i]->reset();
}
delete merge;
}
for(int i=0;i<displays.size();i++){
displays[i]->close();
}
delete rcd;
return 0;
}
catch(exception& e) {
m->errorOut(e, "Rarefact", "getSharedCurve");
exit(1);
}
}
void slave(int rank, int comm_sz) {
Message msg;
int local_v[MAX_VECTOR];
int local_l;
MPI_Status status;
int q; // disposable index
char * strVector; // pointer for string representation of vector
char label[3]; // storage for local event label
// initialize vector
for (q = 0; q < comm_sz; q++)
local_v[q] = 0;
// initialize lamport
local_l = 0;
// initialize label
label[0] = '0' + rank - 1;
label[1] = '@'; // == 'A' - 1
label[2] = '\0';
while (1) {
MPI_Recv(&msg, 1, MESSAGE, MPI_ANY_SOURCE, MPI_ANY_TAG, MPI_COMM_WORLD, &status);
sleep(1);
// On finalize, MPI_TAG == 1
if (status.MPI_TAG == 1) {
strVector = vectorToString(local_v, comm_sz);
sprintf(msg.string, "Process %d report: Event %s - Logical: %d - Vector: %s",
rank - 1, label, local_l, strVector);
free(strVector);
MPI_Send(&msg, 1, MESSAGE, 0, 0, MPI_COMM_WORLD);
break;
}
local_l++;
local_v[rank]++;
label[1]++;
if (status.MPI_SOURCE == 0) {
if (msg.dest == 0) {
printf("Executing event %s in process %d.\n", label, rank - 1);
}
else {
printf("Message sent event %s from process %d to process %d: %s\n",
label, rank - 1, msg.dest - 1, msg.string);
for (q = 0; q < comm_sz; q++) {
msg.vector[q] = local_v[q];
}
msg.lamport = local_l;
MPI_Send(&msg, 1, MESSAGE, msg.dest, 0, MPI_COMM_WORLD);
}
sprintf(msg.string, "receievd");
MPI_Send(&msg, 1, MESSAGE, 0, 0, MPI_COMM_WORLD);
} else {
printf("Message received event %s from process %d by process %d: %s\n",
label, status.MPI_SOURCE - 1, rank - 1, msg.string);
mergeVectors(msg.vector, local_v, comm_sz);
local_l = (msg.lamport >= (local_l - 1)? msg.lamport + 1 : local_l);
}
// print status to stdout
strVector = vectorToString(local_v, comm_sz);
printf("The Logical/Vector time of event %s at process %d is: %d / %s\n\n",
label, rank - 1, local_l, strVector);
free(strVector);
}
}
