Exemple #1
0
static void moveit(FILE *log,
		   int left,int right,char *s,rvec xx[],t_nsborder *nsb)
{
  rvec  *temp;
  int   i,m,bP,start,homenr;
    
  if (!xx) 
    return;

  start=nsb->index[nsb->nodeid];
  homenr=nsb->homenr[nsb->nodeid];
#ifdef DEBUG
  fprintf(log,"Moving %s for trajectory file, start=%d, homenr=%d\n",
	  s,start,homenr);
#endif
  snew(temp,homenr);
  for(i=0; (i<homenr); i++)
    copy_rvec(xx[start+i],temp[i]);

  move_rvecs(log,FALSE,FALSE,left,right,xx,NULL,nsb->nnodes-1,nsb,NULL);
  
  for(i=0; (i<homenr); i++) {
    bP=0;
    for(m=0; (m<DIM); m++)
      if (fabs(xx[start+i][m] - temp[i][m]) > GMX_REAL_MIN)
	bP=1;
    if (bP && log)
      fprintf(log,"%s[%5d] before: (%8.3f,%8.3f,%8.3f)"
	      " After: (%8.3f,%8.3f,%8.3f)\n",
	      s,start+i,temp[i][XX],temp[i][YY],temp[i][ZZ],
	      xx[start+i][XX],xx[start+i][YY],xx[start+i][ZZ]);
  }
  sfree(temp);
}
Exemple #2
0
static void pd_collect_state(const t_commrec *cr, t_state *state)
{
    int shift;

    if (debug)
    {
        fprintf(debug, "Collecting state before exchange\n");
    }
    shift = cr->nnodes - cr->npmenodes - 1;
    move_rvecs(cr, FALSE, FALSE, GMX_LEFT, GMX_RIGHT, state->x, NULL, shift, NULL);
    if (state->v)
    {
        move_rvecs(cr, FALSE, FALSE, GMX_LEFT, GMX_RIGHT, state->v, NULL, shift, NULL);
    }
    if (state->sd_X)
    {
        move_rvecs(cr, FALSE, FALSE, GMX_LEFT, GMX_RIGHT, state->sd_X, NULL, shift, NULL);
    }
}