C++ (Cpp) parasail_memalign_int16_t Exemples

Exemple #1

Fichier : sw_diag_avx2_256_16.c Projet : dikaiosune/parasail-sys

#else
#define FNAME parasail_sw_diag_avx2_256_16
#endif
#endif

parasail_result_t* FNAME(
        const char * const restrict _s1, const int s1Len,
        const char * const restrict _s2, const int s2Len,
        const int open, const int gap, const parasail_matrix_t *matrix)
{
    const int32_t N = 16; /* number of values in vector */
    const int32_t PAD = N-1;
    const int32_t PAD2 = PAD*2;
    const int32_t s1Len_PAD = s1Len+PAD;
    const int32_t s2Len_PAD = s2Len+PAD;
    int16_t * const restrict s1 = parasail_memalign_int16_t(32, s1Len+PAD);
    int16_t * const restrict s2B= parasail_memalign_int16_t(32, s2Len+PAD2);
    int16_t * const restrict _tbl_pr = parasail_memalign_int16_t(32, s2Len+PAD2);
    int16_t * const restrict _del_pr = parasail_memalign_int16_t(32, s2Len+PAD2);
    int16_t * const restrict s2 = s2B+PAD; /* will allow later for negative indices */
    int16_t * const restrict tbl_pr = _tbl_pr+PAD;
    int16_t * const restrict del_pr = _del_pr+PAD;
#ifdef PARASAIL_TABLE
    parasail_result_t *result = parasail_result_new_table1(s1Len, s2Len);
#else
#ifdef PARASAIL_ROWCOL
    parasail_result_t *result = parasail_result_new_rowcol1(s1Len, s2Len);
#else
    parasail_result_t *result = parasail_result_new();
#endif
#endif

Exemple #2

Fichier : nw_trace_diag_sse2_128_16.c Projet : jeffdaily/parasail

    }
}

#define FNAME parasail_nw_trace_diag_sse2_128_16

parasail_result_t* FNAME(
        const char * const restrict _s1, const int s1Len,
        const char * const restrict _s2, const int s2Len,
        const int open, const int gap, const parasail_matrix_t *matrix)
{
    const int32_t N = 8; /* number of values in vector */
    const int32_t PAD = N-1;
    const int32_t PAD2 = PAD*2;
    const int32_t s1Len_PAD = s1Len+PAD;
    const int32_t s2Len_PAD = s2Len+PAD;
    int16_t * const restrict s1 = parasail_memalign_int16_t(16, s1Len+PAD);
    int16_t * const restrict s2B= parasail_memalign_int16_t(16, s2Len+PAD2);
    int16_t * const restrict _H_pr = parasail_memalign_int16_t(16, s2Len+PAD2);
    int16_t * const restrict _F_pr = parasail_memalign_int16_t(16, s2Len+PAD2);
    int16_t * const restrict s2 = s2B+PAD; /* will allow later for negative indices */
    int16_t * const restrict H_pr = _H_pr+PAD;
    int16_t * const restrict F_pr = _F_pr+PAD;
    parasail_result_t *result = parasail_result_new_trace(s1Len, s2Len, 16, sizeof(int8_t));
    int32_t i = 0;
    int32_t j = 0;
    int32_t end_query = s1Len-1;
    int32_t end_ref = s2Len-1;
    int16_t score = NEG_INF;
    __m128i vNegInf = _mm_set1_epi16(NEG_INF);
    __m128i vOpen = _mm_set1_epi16(open);
    __m128i vGap  = _mm_set1_epi16(gap);

Exemple #3

Fichier : sg_stats_diag_sse41_128_16.c Projet : dikaiosune/parasail-sys

#else
#define FNAME parasail_sg_stats_diag_sse41_128_16
#endif
#endif

parasail_result_t* FNAME(
        const char * const restrict _s1, const int s1Len,
        const char * const restrict _s2, const int s2Len,
        const int open, const int gap, const parasail_matrix_t *matrix)
{
    const int32_t N = 8; /* number of values in vector */
    const int32_t PAD = N-1;
    const int32_t PAD2 = PAD*2;
    const int32_t s1Len_PAD = s1Len+PAD;
    const int32_t s2Len_PAD = s2Len+PAD;
    int16_t * const restrict s1      = parasail_memalign_int16_t(16, s1Len+PAD);
    int16_t * const restrict s2B     = parasail_memalign_int16_t(16, s2Len+PAD2);
    int16_t * const restrict _tbl_pr = parasail_memalign_int16_t(16, s2Len+PAD2);
    int16_t * const restrict _del_pr = parasail_memalign_int16_t(16, s2Len+PAD2);
    int16_t * const restrict _mch_pr = parasail_memalign_int16_t(16, s2Len+PAD2);
    int16_t * const restrict _sim_pr = parasail_memalign_int16_t(16, s2Len+PAD2);
    int16_t * const restrict _len_pr = parasail_memalign_int16_t(16, s2Len+PAD2);
    int16_t * const restrict s2 = s2B+PAD; /* will allow later for negative indices */
    int16_t * const restrict tbl_pr = _tbl_pr+PAD;
    int16_t * const restrict del_pr = _del_pr+PAD;
    int16_t * const restrict mch_pr = _mch_pr+PAD;
    int16_t * const restrict sim_pr = _sim_pr+PAD;
    int16_t * const restrict len_pr = _len_pr+PAD;
#ifdef PARASAIL_TABLE
    parasail_result_t *result = parasail_result_new_table3(s1Len, s2Len);
#else