static void prGenbankLink(struct cloneInfo *ci)
/* create link to Genbank database */
{
webPrintLinkTableNewRow();
webPrintLinkCellStart();
printf("<a href=\"");
printEntrezNucleotideUrl(stdout, ci->acc);
printf("\" TARGET=_blank>Genbank %s</a>", ci->acc);
webPrintLinkCellEnd();
}
static void prRefSeqLinks(struct cloneInfo *ci)
/* print link to RefSeq */
{
webPrintLinkTableNewRow();
webPrintLinkCellStart();
printf("<a href=\"");
printEntrezNucleotideUrl(stdout, ci->refSeqAccv);
printf("\" TARGET=_blank>RefSeq %s</a>", ci->refSeqAccv);
webPrintLinkCellEnd();
}
static void ccdsNcbiRows(char *ccdsId, struct ccdsInfo *rsCcds)
/* output RefSeq CCDS entries */
{
struct ccdsInfo *ci;
for (ci = rsCcds; ci != NULL; ci = ci->next)
{
printf("<TR>");
if (ci == rsCcds)
printf("<TH ROWSPAN=%d>RefSeq", slCount(rsCcds));
printf("<TD><A HREF=\"");
printEntrezNucleotideUrl(stdout, ci->mrnaAcc);
printf("\" TARGET=_blank>%s</A> ", ci->mrnaAcc);
printf("<TD><A HREF=\"");
printEntrezProteinUrl(stdout, ci->protAcc);
printf("\" TARGET=_blank>%s</A>", ci->protAcc);
printf("</TR>\n");
}
}
static void prRefSeqSim(struct cloneInfo *ci, struct geneSim *gs)
/* print similarity information for a given RefSeq */
{
webPrintLinkTableNewRow();
// RefSeq acc and link
webPrintLinkCellStart();
printf("<a href=\"");
printEntrezNucleotideUrl(stdout, gs->gene->name);
printf("\" TARGET=_blank>%s</a>", gs->gene->name);
webPrintLinkCellEnd();
// link to browser
webPrintLinkCellStart();
printf("<A HREF=\"%s&db=%s&position=%s%%3A%d-%d\" target=_blank>%s:%d-%d</A>",
hgTracksPathAndSettings(), database,
gs->gene->chrom, gs->gene->txStart+1, gs->gene->txEnd,
gs->gene->chrom, gs->gene->txStart+1, gs->gene->txEnd);
webPrintLinkCellEnd();
// similarity
webPrintLinkCellRightStart();
printf("%0.2f%%", 100.0*gs->sim);
webPrintLinkCellEnd();
}