void checkBlock(mafBlock_t *b, char *seq, uint32_t start, uint32_t stop, bool *printedHeader) {
// read through each line of a mafBlock and if the sequence matches the region
// we're looking for, report the block.
mafLine_t *ml = b->headLine;
while (ml != NULL) {
if (searchMatched(ml, seq, start, stop)) {
if (!*printedHeader) {
printHeader();
*printedHeader = true;
}
reportBlock(b);
break;
}
ml = ml->next;
}
}
void checkBlock(mafBlock_t *b, uint64_t blockNumber, const char *seq, uint64_t start,
uint64_t stop, bool *printedHeader, bool isSoft) {
// read through each line of a mafBlock and if the sequence matches the region
// we're looking for, report the block.
mafLine_t *ml = maf_mafBlock_getHeadLine(b);
mafBlock_t *dummy = NULL;
while (ml != NULL) {
if (searchMatched(ml, seq, start, stop)) {
if (!*printedHeader) {
printHeader();
*printedHeader = true;
}
if (isSoft) {
maf_mafBlock_print(b);
break;
} else {
dummy = processBlockForSplice(b, blockNumber, seq, start, stop, false);
assert(dummy == NULL);
break;
}
}
ml = maf_mafLine_getNext(ml);
}
}
