unsigned char *seq_readnib(const char *fname, int32_t rbase, int32_t rlen, int32_t *slen)
{
FILE *fp = ckopen(fname, "rb");
unsigned char *s = seq_freadnib(fp, rbase, rlen, slen);
fclose(fp);
return s;
}
int seq_read_nib(SEQ *seq)
{
int n;
if (seq->header) ZFREE(seq->header);
if (seq->seq) ZFREE(seq->seq);
seq->offset = ftell(seq->fp);
seq->seq = seq_freadnib(seq->fp, seq->from-1, seq->slen, &(seq->slen));
if (seq->seq == 0) return 0;
n = strlen(seq->fname)+1+22+1+22+1;
seq->header = ckalloc(n);
seq->hlen = snprintf(seq->header, n, "%s:%d-%d",
seq->fname, seq->from, seq->from+seq->slen-1);
seq->count++;
return 1;
}
