Exemple #1
0
void txEdgeBedOutput(struct txEdgeBed *el, FILE *f, char sep, char lastSep) 
/* Print out txEdgeBed.  Separate fields with sep. Follow last field with lastSep. */
{
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->chrom);
if (sep == ',') fputc('"',f);
fputc(sep,f);
fprintf(f, "%d", el->chromStart);
fputc(sep,f);
fprintf(f, "%d", el->chromEnd);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->name);
if (sep == ',') fputc('"',f);
fputc(sep,f);
fprintf(f, "%d", el->score);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->strand);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->startType);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
sqlEnumPrint(f, el->type, values_type);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->endType);
if (sep == ',') fputc('"',f);
fputc(lastSep,f);
}
Exemple #2
0
void gbWarnOutput(struct gbWarn *el, FILE *f, char sep, char lastSep) 
/* Print out gbWarn.  Separate fields with sep. Follow last field with lastSep. */
{
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->acc);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
sqlEnumPrint(f, el->reason, values_reason);
if (sep == ',') fputc('"',f);
fputc(lastSep,f);
}
Exemple #3
0
void symTestOutput(struct symTest *el, FILE *f, char sep, char lastSep) 
/* Print out symTest.  Separate fields with sep. Follow last field with lastSep. */
{
fprintf(f, "%d", el->id);
fputc(sep,f);
if (sep == ',') fputc('"',f);
sqlEnumPrint(f, el->sex, values_sex);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
sqlSetPrint(f, el->skills, values_skills);
if (sep == ',') fputc('"',f);
fputc(lastSep,f);
}
void snp125CodingCoordlessOutput(struct snp125CodingCoordless *el, FILE *f, char sep, char lastSep) 
/* Print out snp125CodingCoordless.  Separate fields with sep. Follow last field with lastSep. */
{
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->name);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
fprintf(f, "%s", el->transcript);
if (sep == ',') fputc('"',f);
fputc(sep,f);
if (sep == ',') fputc('"',f);
sqlEnumPrint(f, el->frame, values_frame);
if (sep == ',') fputc('"',f);
fputc(sep,f);
fprintf(f, "%d", el->alleleCount);
fputc(sep,f);
{
int i;
if (sep == ',') fputc('{',f);
for (i=0; i<el->alleleCount; ++i)
    {
    fprintf(f, "%u", el->funcCodes[i]);
    fputc(',', f);
    }
if (sep == ',') fputc('}',f);
}
fputc(sep,f);
{
int i;
if (sep == ',') fputc('{',f);
for (i=0; i<el->alleleCount; ++i)
    {
    if (sep == ',') fputc('"',f);
    fprintf(f, "%s", el->alleles[i]);
    if (sep == ',') fputc('"',f);
    fputc(',', f);
    }
if (sep == ',') fputc('}',f);
}
fputc(sep,f);
{
int i;
if (sep == ',') fputc('{',f);
for (i=0; i<el->alleleCount; ++i)
    {
    if (sep == ',') fputc('"',f);
    fprintf(f, "%s", el->codons[i]);
    if (sep == ',') fputc('"',f);
    fputc(',', f);
    }
if (sep == ',') fputc('}',f);
}
fputc(sep,f);
{
int i;
if (sep == ',') fputc('{',f);
for (i=0; i<el->alleleCount; ++i)
    {
    if (sep == ',') fputc('"',f);
    fprintf(f, "%s", el->peptides[i]);
    if (sep == ',') fputc('"',f);
    fputc(',', f);
    }
if (sep == ',') fputc('}',f);
}
fputc(lastSep,f);
}