void spate_set_producers_reply(struct thorium_actor *self, struct thorium_message *message)
{
struct spate *concrete_self;
concrete_self = (struct spate *)thorium_actor_concrete_actor(self);
thorium_actor_send_reply_vector(self, ACTION_START, &concrete_self->initial_actors);
}
void spate_start_reply_unitig_manager(struct thorium_actor *self, struct thorium_message *message)
{
struct spate *concrete_self;
concrete_self = (struct spate *)thorium_actor_concrete_actor(self);
thorium_actor_add_action_with_source(self, ACTION_SET_PRODUCERS_REPLY,
spate_set_producers_reply_reply_unitig_manager,
concrete_self->unitig_manager);
thorium_actor_send_reply_vector(self, ACTION_SET_PRODUCERS,
&concrete_self->graph_stores);
}
void spate_set_consumers_reply(struct thorium_actor *self, struct thorium_message *message)
{
struct spate *concrete_self;
concrete_self = (struct spate *)thorium_actor_concrete_actor(self);
thorium_actor_log(self, "spate %d sends %d spawners to controller %d",
thorium_actor_name(self),
(int)core_vector_size(&concrete_self->initial_actors),
concrete_self->input_controller);
thorium_actor_send_reply_vector(self, ACTION_START, &concrete_self->initial_actors);
}
/*
* Basically, this actor does this:
* - spawn visitors
* - let them visit stuff
* - kill them.
* - spawn walkers
* - let them walk
* - kill the walkers
* - return OK
*/
void biosal_unitig_manager_receive(struct thorium_actor *self, struct thorium_message *message)
{
struct biosal_unitig_manager *concrete_self;
int tag;
void *buffer;
int spawner;
int expected;
int script;
int actor_count;
int source;
struct core_string file_name;
char *directory;
int argc;
char **argv;
char *path;
tag = thorium_message_action(message);
source = thorium_message_source(message);
buffer = thorium_message_buffer(message);
concrete_self = (struct biosal_unitig_manager *)thorium_actor_concrete_actor(self);
if (tag == ACTION_START) {
core_vector_unpack(&concrete_self->spawners, buffer);
spawner = thorium_actor_get_random_spawner(self, &concrete_self->spawners);
concrete_self->state = STATE_SPAWN_WRITER;
thorium_actor_send_int(self, spawner, ACTION_SPAWN, SCRIPT_WRITER_PROCESS);
} else if (tag == ACTION_SPAWN_REPLY
&& concrete_self->state == STATE_SPAWN_WRITER) {
thorium_message_unpack_int(message, 0, &concrete_self->writer_process);
/*
* open the file now.
*/
argc = thorium_actor_argc(self);
argv = thorium_actor_argv(self);
directory = core_command_get_output_directory(argc, argv);
core_string_init(&file_name, directory);
core_string_append(&file_name, "/");
core_string_append(&file_name, "unitigs.fasta");
path = core_string_get(&file_name);
thorium_actor_send_buffer(self, concrete_self->writer_process,
ACTION_OPEN, strlen(path) + 1, path);
core_string_destroy(&file_name);
} else if (tag == ACTION_OPEN_REPLY
&& source == concrete_self->writer_process) {
/*
* Spawn visitors.
*/
concrete_self->state = STATE_VISITORS;
thorium_actor_send_to_self_empty(self, ACTION_PING);
} else if (tag == ACTION_PING) {
spawner = thorium_actor_get_random_spawner(self, &concrete_self->spawners);
thorium_actor_send_int(self, spawner, ACTION_SPAWN, SCRIPT_MANAGER);
} else if (tag == ACTION_SPAWN_REPLY) {
thorium_message_unpack_int(message, 0, &concrete_self->manager);
script = SCRIPT_UNITIG_VISITOR;
if (concrete_self->state == STATE_WALKERS) {
script = SCRIPT_UNITIG_WALKER;
}
thorium_actor_send_int(self, concrete_self->manager, ACTION_MANAGER_SET_SCRIPT,
script);
} else if (tag == ACTION_ASK_TO_STOP) {
thorium_actor_send_empty(self, concrete_self->writer_process,
ACTION_ASK_TO_STOP);
thorium_actor_send_empty(self, concrete_self->manager,
ACTION_ASK_TO_STOP);
thorium_actor_send_to_self_empty(self, ACTION_STOP);
thorium_actor_send_reply_empty(self, ACTION_ASK_TO_STOP_REPLY);
} else if (tag == ACTION_MANAGER_SET_SCRIPT_REPLY) {
actor_count = UNITIG_VISITOR_COUNT_PER_WORKER;
if (concrete_self->state == STATE_WALKERS)
actor_count = UNITIG_WALKER_COUNT_PER_WORKER;
thorium_actor_send_reply_int(self, ACTION_MANAGER_SET_ACTORS_PER_WORKER,
actor_count);
} else if (tag == ACTION_MANAGER_SET_ACTORS_PER_WORKER_REPLY) {
thorium_actor_send_reply_vector(self, ACTION_START,
&concrete_self->spawners);
} else if (tag == ACTION_START_REPLY
&& concrete_self->state == STATE_VISITORS
&& core_vector_size(&concrete_self->visitors) == 0) {
core_vector_unpack(&concrete_self->visitors, buffer);
printf("DEBUG the system has %d visitors\n",
(int)core_vector_size(&concrete_self->visitors));
thorium_actor_send_to_supervisor_empty(self, ACTION_START_REPLY);
} else if (tag == ACTION_START_REPLY
&& concrete_self->state == STATE_WALKERS
&& core_vector_size(&concrete_self->walkers) == 0) {
core_vector_unpack(&concrete_self->walkers, buffer);
printf("DEBUG the system has %d walkers\n",
(int)core_vector_size(&concrete_self->walkers));
core_timer_start(&concrete_self->timer);
concrete_self->completed = 0;
thorium_actor_send_range_int(self, &concrete_self->walkers,
ACTION_SET_CONSUMER, concrete_self->writer_process);
thorium_actor_send_range_vector(self, &concrete_self->walkers,
ACTION_START, &concrete_self->graph_stores);
} else if (tag == ACTION_SET_PRODUCERS) {
core_vector_unpack(&concrete_self->graph_stores, buffer);
core_timer_start(&concrete_self->timer);
concrete_self->completed = 0;
thorium_actor_send_range_vector(self, &concrete_self->visitors,
ACTION_START, &concrete_self->graph_stores);
} else if (tag == ACTION_START_REPLY && concrete_self->state == STATE_VISITORS) {
++concrete_self->completed;
expected = core_vector_size(&concrete_self->visitors);
if (concrete_self->completed % UNITIG_VISITOR_COUNT_PER_WORKER == 0
|| concrete_self->completed == expected) {
printf("PROGRESS unitig visitors %d/%d\n",
concrete_self->completed,
expected);
}
if (concrete_self->completed == expected) {
core_timer_stop(&concrete_self->timer);
core_timer_print_with_description(&concrete_self->timer, "Visit vertices for unitigs");
/*
* Stop the visitor manager and all visitors too.
*/
thorium_actor_send_empty(self, concrete_self->manager, ACTION_ASK_TO_STOP);
/*
* Reset graph stores.
*/
thorium_actor_send_range_empty(self, &concrete_self->graph_stores,
ACTION_RESET);
concrete_self->completed = 0;
}
} else if (tag == ACTION_RESET_REPLY) {
++concrete_self->completed;
expected = core_vector_size(&concrete_self->graph_stores);
if (concrete_self->completed == expected) {
concrete_self->completed = 0;
concrete_self->state = STATE_WALKERS;
/*
* Go back at the beginning.
*/
thorium_actor_send_to_self_empty(self, ACTION_PING);
}
} else if (tag == ACTION_START_REPLY && concrete_self->state == STATE_WALKERS) {
++concrete_self->completed;
expected = core_vector_size(&concrete_self->walkers);
if (concrete_self->completed % UNITIG_WALKER_COUNT_PER_WORKER == 0
|| concrete_self->completed == expected) {
printf("PROGRESS unitig walkers %d/%d\n",
concrete_self->completed,
expected);
}
if (concrete_self->completed == expected) {
core_timer_stop(&concrete_self->timer);
core_timer_print_with_description(&concrete_self->timer, "Walk for unitigs");
thorium_actor_send_to_supervisor_empty(self, ACTION_SET_PRODUCERS_REPLY);
}
}
}
