void spate_spawn_reply_unitig_manager(struct thorium_actor *self, struct thorium_message *message) { struct spate *concrete_self; concrete_self = (struct spate *)thorium_actor_concrete_actor(self); thorium_message_unpack_int(message, 0, &concrete_self->unitig_manager); thorium_actor_add_action_with_source(self, ACTION_START_REPLY, spate_start_reply_unitig_manager, concrete_self->unitig_manager); thorium_actor_send_vector(self, concrete_self->unitig_manager, ACTION_START, &concrete_self->initial_actors); }
void spate_distribute_reply(struct thorium_actor *self, struct thorium_message *message) { struct spate *concrete_self; concrete_self = (struct spate *)thorium_actor_concrete_actor(self); thorium_actor_log(self, "spate %d: all sequence stores are ready", thorium_actor_name(self)); thorium_actor_send_vector(self, concrete_self->assembly_graph_builder, ACTION_SET_PRODUCERS, &concrete_self->sequence_stores); /* kill the controller */ thorium_actor_send_reply_empty(self, ACTION_ASK_TO_STOP); }
void spate_start_reply_manager(struct thorium_actor *self, struct thorium_message *message) { struct core_vector consumers; struct spate *concrete_self; void *buffer; concrete_self = (struct spate *)thorium_actor_concrete_actor(self); core_vector_init(&consumers, sizeof(int)); buffer = thorium_message_buffer(message); core_vector_unpack(&consumers, buffer); thorium_actor_log(self, "spate %d sends the names of %d consumers to controller %d", thorium_actor_name(self), (int)core_vector_size(&consumers), concrete_self->input_controller); thorium_actor_send_vector(self, concrete_self->input_controller, ACTION_SET_CONSUMERS, &consumers); core_vector_push_back_vector(&concrete_self->sequence_stores, &consumers); core_vector_destroy(&consumers); }
void biosal_input_controller_receive(struct thorium_actor *actor, struct thorium_message *message) { int tag; int count; char *file; void *buffer; struct biosal_input_controller *controller; struct biosal_input_controller *concrete_actor; int destination; int script; int stream; char *local_file; int i; int name; int source; int destination_index; struct thorium_message new_message; int error; int stream_index; int64_t entries; int64_t *bucket; int *int_bucket; int spawner; int command_name; int stream_name; int consumer; int consumer_index; int *bucket_for_requests; char *new_buffer; int new_count; int file_index; struct core_vector mega_blocks; struct core_vector_iterator vector_iterator; struct biosal_mega_block *mega_block; struct core_vector *vector_bucket; struct core_vector block_counts; uint64_t block_entries; int mega_block_index; uint64_t offset; struct biosal_mega_block *block; int acquaintance_index; if (thorium_actor_take_action(actor, message)) { return; } thorium_message_get_all(message, &tag, &count, &buffer, &source); name = thorium_actor_name(actor); controller = (struct biosal_input_controller *)thorium_actor_concrete_actor(actor); concrete_actor = controller; if (tag == ACTION_START) { core_vector_init(&concrete_actor->spawners, 0); core_vector_unpack(&concrete_actor->spawners, buffer); core_vector_resize(&concrete_actor->stores_per_spawner, core_vector_size(&concrete_actor->spawners)); for (i = 0; i < core_vector_size(&concrete_actor->spawners); i++) { int_bucket = (int *)core_vector_at(&concrete_actor->stores_per_spawner, i); *int_bucket = 0; spawner = core_vector_at_as_int(&concrete_actor->spawners, i); core_queue_enqueue(&concrete_actor->unprepared_spawners, &spawner); } concrete_actor->state = BIOSAL_INPUT_CONTROLLER_STATE_PREPARE_SPAWNERS; #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL printf("DEBUG preparing first spawner\n"); #endif thorium_actor_send_to_self_empty(actor, ACTION_INPUT_CONTROLLER_PREPARE_SPAWNERS); /* thorium_dispatcher_print(thorium_actor_dispatcher(actor)); */ } else if (tag == ACTION_ADD_FILE) { file = (char *)buffer; local_file = core_memory_allocate(strlen(file) + 1, MEMORY_CONTROLLER); strcpy(local_file, file); printf("controller %d ACTION_ADD_FILE %s\n", thorium_actor_name(actor), local_file); core_vector_push_back(&concrete_actor->files, &local_file); bucket = core_vector_at(&concrete_actor->files, core_vector_size(&concrete_actor->files) - 1); local_file = *(char **)bucket; #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG11 ACTION_ADD_FILE %s %p bucket %p index %d\n", local_file, local_file, (void *)bucket, core_vector_size(&concrete_actor->files) - 1); #endif thorium_actor_send_reply_empty(actor, ACTION_ADD_FILE_REPLY); } else if (tag == ACTION_SPAWN_REPLY) { if (concrete_actor->state == BIOSAL_INPUT_CONTROLLER_STATE_SPAWN_STORES) { biosal_input_controller_add_store(actor, message); return; } else if (concrete_actor->state == BIOSAL_INPUT_CONTROLLER_STATE_PREPARE_SPAWNERS) { concrete_actor->ready_spawners++; thorium_message_unpack_int(message, 0, &name); thorium_actor_send_empty(actor, name, ACTION_ASK_TO_STOP); thorium_actor_send_to_self_empty(actor, ACTION_INPUT_CONTROLLER_PREPARE_SPAWNERS); if (concrete_actor->ready_spawners == (int)core_vector_size(&concrete_actor->spawners)) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG all spawners are prepared\n"); #endif thorium_actor_send_to_supervisor_empty(actor, ACTION_START_REPLY); } return; } else if (concrete_actor->state == BIOSAL_INPUT_CONTROLLER_STATE_SPAWN_PARTITIONER) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG received spawn reply, state is spawn_partitioner\n"); #endif thorium_message_unpack_int(message, 0, &concrete_actor->partitioner); /* configure the partitioner */ destination = concrete_actor->partitioner; thorium_actor_send_int(actor, destination, ACTION_SEQUENCE_PARTITIONER_SET_BLOCK_SIZE, concrete_actor->block_size); thorium_actor_send_int(actor, destination, ACTION_SEQUENCE_PARTITIONER_SET_ACTOR_COUNT, core_vector_size(&concrete_actor->consumers)); core_vector_init(&block_counts, sizeof(uint64_t)); for (i = 0; i < core_vector_size(&concrete_actor->mega_block_vector); i++) { block = (struct biosal_mega_block *)core_vector_at(&concrete_actor->mega_block_vector, i); block_entries = biosal_mega_block_get_entries(block); core_vector_push_back_uint64_t(&block_counts, block_entries); } new_count = core_vector_pack_size(&block_counts); new_buffer = thorium_actor_allocate(actor, new_count); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG packed counts, %d bytes\n", count); #endif core_vector_pack(&block_counts, new_buffer); thorium_message_init(&new_message, ACTION_SEQUENCE_PARTITIONER_SET_ENTRY_VECTOR, new_count, new_buffer); thorium_actor_send(actor, destination, &new_message); core_vector_destroy(&block_counts); return; } else if (concrete_actor->state == BIOSAL_INPUT_CONTROLLER_STATE_SPAWN_READING_STREAMS) { thorium_message_unpack_int(message, 0, &stream); stream_index = stream; mega_block_index = core_vector_size(&concrete_actor->reading_streams); core_vector_push_back_int(&concrete_actor->reading_streams, stream_index); core_vector_push_back_int(&concrete_actor->partition_commands, -1); core_vector_push_back_int(&concrete_actor->stream_consumers, -1); stream_index = core_vector_size(&concrete_actor->reading_streams) - 1; mega_block = (struct biosal_mega_block *)core_vector_at(&concrete_actor->mega_block_vector, mega_block_index); offset = biosal_mega_block_get_offset(mega_block); core_map_add_value(&concrete_actor->assigned_blocks, &stream_index, &mega_block_index); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_READING_STREAMS printf("DEBUG setting offset to %" PRIu64 " for stream/%d\n", offset, stream); #endif thorium_actor_send_uint64_t(actor, stream, ACTION_INPUT_STREAM_SET_START_OFFSET, offset); return; } stream = *(int *)buffer; file_index = core_vector_size(&concrete_actor->counting_streams); local_file = *(char **)core_vector_at(&concrete_actor->files, file_index); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_READING_STREAMS printf("DEBUG actor %d receives stream %d from spawner %d for file %s\n", name, stream, source, local_file); #endif core_vector_push_back(&concrete_actor->counting_streams, &stream); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_READING_STREAMS printf("asking stream/%d to open %s\n", stream, local_file); #endif thorium_message_init(&new_message, ACTION_INPUT_OPEN, strlen(local_file) + 1, local_file); #ifdef DEBUG_ISSUE_594 thorium_message_print(&new_message); printf("SEND Buffer %s\n", local_file); #endif thorium_actor_send(actor, stream, &new_message); thorium_message_destroy(&new_message); if (core_vector_size(&concrete_actor->counting_streams) != core_vector_size(&concrete_actor->files)) { thorium_actor_send_to_self_empty(actor, ACTION_INPUT_SPAWN); } #ifdef DEBUG_ISSUE_594 printf("EXIT Buffer %s\n", local_file); #endif } else if (tag == ACTION_INPUT_OPEN_REPLY) { if (concrete_actor->state == BIOSAL_INPUT_CONTROLLER_STATE_SPAWN_READING_STREAMS) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_READING_STREAMS printf("DEBUG receives open.reply for reading stream/%d\n", source); #endif concrete_actor->opened_streams++; if (concrete_actor->opened_streams == core_vector_size(&concrete_actor->mega_block_vector)) { thorium_actor_send_to_self_empty(actor, ACTION_INPUT_CONTROLLER_CREATE_STORES); } return; } concrete_actor->opened_streams++; stream = source; thorium_message_unpack_int(message, 0, &error); if (error == BIOSAL_INPUT_ERROR_NO_ERROR) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG actor %d asks %d ACTION_INPUT_COUNT_IN_PARALLEL\n", name, stream); #endif thorium_actor_send_vector(actor, stream, ACTION_INPUT_COUNT_IN_PARALLEL, &concrete_actor->spawners); } else { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG actor %d received error %d from %d\n", name, error, stream); #endif concrete_actor->counted++; } /* if all streams failed, notice supervisor */ if (concrete_actor->counted == core_vector_size(&concrete_actor->files)) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 #endif printf("DEBUG %d: Error all streams failed.\n", thorium_actor_name(actor)); thorium_actor_send_to_supervisor_empty(actor, ACTION_INPUT_DISTRIBUTE_REPLY); } /* if (concrete_actor->opened_streams == core_vector_size(&concrete_actor->files)) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG controller %d sends ACTION_INPUT_DISTRIBUTE_REPLY to supervisor %d [%d/%d]\n", name, thorium_actor_supervisor(actor), concrete_actor->opened_streams, core_vector_size(&concrete_actor->files)); #endif } */ } else if (tag == ACTION_INPUT_COUNT_PROGRESS) { stream_index = core_vector_index_of(&concrete_actor->counting_streams, &source); local_file = core_vector_at_as_char_pointer(&concrete_actor->files, stream_index); thorium_message_unpack_int64_t(message, 0, &entries); bucket = (int64_t *)core_vector_at(&concrete_actor->counts, stream_index); printf("controller/%d receives progress from stream/%d file %s %" PRIu64 " entries so far\n", name, source, local_file, entries); *bucket = entries; } else if (tag == ACTION_INPUT_COUNT_IN_PARALLEL_REPLY) { stream_index = core_vector_index_of(&concrete_actor->counting_streams, &source); local_file = core_vector_at_as_char_pointer(&concrete_actor->files, stream_index); core_vector_init(&mega_blocks, 0); core_vector_unpack(&mega_blocks, buffer); printf("DEBUG receive mega blocks from %d\n", source); /* * Update the file index for every mega block. */ core_vector_iterator_init(&vector_iterator, &mega_blocks); bucket = (int64_t*)core_vector_at(&concrete_actor->counts, stream_index); (*bucket) = 0; while (core_vector_iterator_has_next(&vector_iterator)) { core_vector_iterator_next(&vector_iterator, (void **)&mega_block); printf("SETTING setting file to %d for mega block\n", stream_index); biosal_mega_block_set_file(mega_block, stream_index); entries = biosal_mega_block_get_entries_from_start(mega_block); printf("Cataloging %d ENTRIES\n", (int)entries); (*bucket) = entries; biosal_mega_block_print(mega_block); } core_vector_iterator_destroy(&vector_iterator); vector_bucket = (struct core_vector *)core_map_add(&concrete_actor->mega_blocks, &stream_index); core_vector_init_copy(vector_bucket, &mega_blocks); core_vector_destroy(&mega_blocks); concrete_actor->counted++; printf("controller/%d received from stream/%d for file %s %" PRIu64 " entries (final) %d/%d\n", name, source, local_file, entries, concrete_actor->counted, (int)core_vector_size(&concrete_actor->files)); thorium_actor_send_reply_empty(actor, ACTION_INPUT_CLOSE); /* continue work here, tell supervisor about it */ if (concrete_actor->counted == core_vector_size(&concrete_actor->files)) { thorium_actor_send_to_self_empty(actor, ACTION_INPUT_CONTROLLER_SPAWN_READING_STREAMS); } } else if (tag == ACTION_INPUT_DISTRIBUTE) { core_timer_start(&concrete_actor->input_timer); core_timer_start(&concrete_actor->counting_timer); /* for each file, spawn a stream to count */ /* no files, return immediately */ if (core_vector_size(&concrete_actor->files) == 0) { printf("Error: no file to distribute...\n"); thorium_actor_send_reply_empty(actor, ACTION_INPUT_DISTRIBUTE_REPLY); return; } #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG actor %d receives ACTION_INPUT_DISTRIBUTE\n", name); #endif #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG send ACTION_INPUT_SPAWN to self\n"); #endif thorium_actor_send_to_self_empty(actor, ACTION_INPUT_SPAWN); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG resizing counts to %d\n", core_vector_size(&concrete_actor->files)); #endif core_vector_resize(&concrete_actor->counts, core_vector_size(&concrete_actor->files)); for (i = 0; i < core_vector_size(&concrete_actor->counts); i++) { bucket = (int64_t*)core_vector_at(&concrete_actor->counts, i); *bucket = 0; } } else if (tag == ACTION_INPUT_SPAWN && source == name) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG ACTION_INPUT_SPAWN\n"); #endif script = SCRIPT_INPUT_STREAM; concrete_actor->state = BIOSAL_INPUT_CONTROLLER_STATE_SPAWN_STREAMS; /* the next file name to send is the current number of streams */ i = core_vector_size(&concrete_actor->counting_streams); destination_index = i % core_vector_size(&concrete_actor->spawners); destination = *(int *)core_vector_at(&concrete_actor->spawners, destination_index); thorium_message_init(message, ACTION_SPAWN, sizeof(script), &script); thorium_actor_send(actor, destination, message); bucket = core_vector_at(&concrete_actor->files, i); local_file = *(char **)core_vector_at(&concrete_actor->files, i); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG890 local_file %p bucket %p index %d\n", local_file, (void *)bucket, i); #endif #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG actor %d spawns a stream for file %d/%d via spawner %d\n", name, i, core_vector_size(&concrete_actor->files), destination); #endif /* also, spawn 4 stores on each node */ } else if (tag == ACTION_ASK_TO_STOP && ( source == thorium_actor_supervisor(actor) || source == thorium_actor_name(actor))) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 #endif /* stop streams */ for (i = 0; i < core_vector_size(&concrete_actor->counting_streams); i++) { stream = *(int *)core_vector_at(&concrete_actor->counting_streams, i); thorium_actor_send_empty(actor, stream, ACTION_ASK_TO_STOP); } for (i = 0; i < core_vector_size(&concrete_actor->reading_streams); i++) { stream = *(int *)core_vector_at(&concrete_actor->reading_streams, i); thorium_actor_send_empty(actor, stream, ACTION_ASK_TO_STOP); } #if 0 /* stop data stores */ for (i = 0; i < core_vector_size(&concrete_actor->consumers); i++) { store = core_vector_at_as_int(&concrete_actor->consumers, i); thorium_actor_send_empty(actor, store, ACTION_ASK_TO_STOP); } #endif /* stop partitioner */ if (concrete_actor->partitioner != THORIUM_ACTOR_NOBODY) { thorium_actor_send_empty(actor, concrete_actor->partitioner, ACTION_ASK_TO_STOP); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG controller %d sends ACTION_ASK_TO_STOP_REPLY to %d\n", thorium_actor_name(actor), thorium_message_source(message)); #endif } thorium_actor_send_reply_empty(actor, ACTION_ASK_TO_STOP_REPLY); /* stop self */ thorium_actor_send_to_self_empty(actor, ACTION_STOP); thorium_actor_ask_to_stop(actor, message); printf("DEBUG controller %d dies\n", name); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG #endif } else if (tag == ACTION_INPUT_CONTROLLER_CREATE_PARTITION && source == name) { spawner = *(int *)core_vector_at(&concrete_actor->spawners, core_vector_size(&concrete_actor->spawners) / 2); thorium_actor_send_int(actor, spawner, ACTION_SPAWN, SCRIPT_SEQUENCE_PARTITIONER); concrete_actor->state = BIOSAL_INPUT_CONTROLLER_STATE_SPAWN_PARTITIONER; #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG input controller %d spawns a partitioner via spawner %d\n", name, spawner); #endif } else if (tag == ACTION_SEQUENCE_PARTITIONER_COMMAND_IS_READY) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG controller receives ACTION_SEQUENCE_PARTITIONER_COMMAND_IS_READY, asks for command\n"); #endif thorium_actor_send_reply_empty(actor, ACTION_SEQUENCE_PARTITIONER_GET_COMMAND); } else if (tag == ACTION_SEQUENCE_PARTITIONER_GET_COMMAND_REPLY) { biosal_input_controller_receive_command(actor, message); } else if (tag == ACTION_SEQUENCE_PARTITIONER_FINISHED) { thorium_actor_send_empty(actor, concrete_actor->partitioner, ACTION_ASK_TO_STOP); biosal_input_controller_verify_requests(actor, message); } else if (tag == ACTION_SEQUENCE_PARTITIONER_PROVIDE_STORE_ENTRY_COUNTS) { biosal_input_controller_receive_store_entry_counts(actor, message); } else if (tag == ACTION_RESERVE_REPLY) { concrete_actor->ready_consumers++; printf("DEBUG marker ACTION_RESERVE_REPLY %d/%d\n", concrete_actor->ready_consumers, (int)core_vector_size(&concrete_actor->consumers)); if (concrete_actor->ready_consumers == core_vector_size(&concrete_actor->consumers)) { concrete_actor->ready_consumers = 0; printf("DEBUG all consumers are ready\n"); thorium_actor_send_empty(actor, concrete_actor->partitioner, ACTION_SEQUENCE_PARTITIONER_PROVIDE_STORE_ENTRY_COUNTS_REPLY); } } else if (tag == ACTION_INPUT_PUSH_SEQUENCES_READY) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG biosal_input_controller_receive received ACTION_INPUT_PUSH_SEQUENCES_READY\n"); #endif stream_name = source; acquaintance_index = stream_name; stream_index = core_vector_index_of(&concrete_actor->reading_streams, &acquaintance_index); command_name = *(int *)core_vector_at(&concrete_actor->partition_commands, stream_index); thorium_actor_send_int(actor, concrete_actor->partitioner, ACTION_SEQUENCE_PARTITIONER_GET_COMMAND_REPLY_REPLY, command_name); } else if (tag == ACTION_INPUT_PUSH_SEQUENCES_REPLY) { stream_name = source; thorium_message_unpack_int(message, 0, &consumer); consumer_index = core_vector_index_of(&concrete_actor->consumers, &consumer); bucket_for_requests = (int *)core_vector_at(&concrete_actor->consumer_active_requests, consumer_index); (*bucket_for_requests)--; biosal_input_controller_verify_requests(actor, message); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_CONSUMERS printf("DEBUG consumer # %d has %d active requests\n", consumer_index, *bucket_for_requests); #endif } else if (tag == ACTION_SET_CONSUMERS) { core_vector_init(&concrete_actor->consumers, 0); core_vector_unpack(&concrete_actor->consumers, buffer); printf("controller %d receives %d consumers\n", thorium_actor_name(actor), (int)core_vector_size(&concrete_actor->consumers)); for (i = 0; i < core_vector_size(&concrete_actor->consumers); i++) { core_vector_push_back_int(&concrete_actor->consumer_active_requests, 0); } #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG core_vector_print_int(&concrete_actor->consumers); printf("\n"); #endif thorium_actor_send_reply_empty(actor, ACTION_SET_CONSUMERS_REPLY); } else if (tag == ACTION_SET_BLOCK_SIZE) { thorium_message_unpack_int(message, 0, &concrete_actor->block_size); thorium_actor_send_reply_empty(actor, ACTION_SET_BLOCK_SIZE_REPLY); } else if (tag == ACTION_SEQUENCE_STORE_READY) { concrete_actor->filled_consumers++; #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG ACTION_SEQUENCE_STORE_READY %d/%d\n", concrete_actor->filled_consumers, (int)core_vector_size(&concrete_actor->consumers)); #endif if (concrete_actor->filled_consumers == core_vector_size(&concrete_actor->consumers)) { concrete_actor->filled_consumers = 0; printf("DEBUG: all consumers are filled, sending ACTION_INPUT_DISTRIBUTE_REPLY\n"); core_timer_stop(&concrete_actor->input_timer); core_timer_stop(&concrete_actor->distribution_timer); core_timer_print_with_description(&concrete_actor->distribution_timer, "Load input / Distribute input data"); core_timer_print_with_description(&concrete_actor->input_timer, "Load input"); thorium_actor_send_to_supervisor_empty(actor, ACTION_INPUT_DISTRIBUTE_REPLY); } } }
void thorium_actor_send_reply_vector(struct thorium_actor *actor, int tag, struct core_vector *vector) { thorium_actor_send_vector(actor, thorium_actor_source(actor), tag, vector); }
void biosal_input_stream_count_reply(struct thorium_actor *self, struct thorium_message *message) { struct biosal_input_stream *concrete_self; void *buffer; uint64_t result; struct biosal_mega_block *block; int i; int size; struct core_vector *vector; int source_index; int source; int j; uint64_t total; concrete_self = (struct biosal_input_stream *)thorium_actor_concrete_actor(self); buffer = thorium_message_buffer(message); source = thorium_message_source(message); source_index = core_vector_index_of(&concrete_self->parallel_streams, &source); vector = core_vector_at(&concrete_self->parallel_mega_blocks, source_index); core_vector_unpack(vector, buffer); block = core_vector_at_last(vector); result = biosal_mega_block_get_entries(block); concrete_self->total_entries += result; ++concrete_self->finished_parallel_stream_count; printf("DEBUG count_reply %d/%d\n", concrete_self->finished_parallel_stream_count, (int)core_vector_size(&concrete_self->parallel_streams)); /* * Send back an array of mega blocks when it is done. */ if (concrete_self->finished_parallel_stream_count == core_vector_size(&concrete_self->parallel_streams)) { /* * Transfer mega blocks * to main vector. */ size = core_vector_size(&concrete_self->parallel_streams); for (i = 0; i < size; i++) { /* * This is easy to do because they are already sorted. * * With one parallel stream, there is nothing else to do. * * Otherwise, mega blocks with correct entries_from_start * need to be created (the entries fields are only for * the stuff between 2 offsets so they are already * correct. */ vector = core_vector_at(&concrete_self->parallel_mega_blocks, i); #if 0 printf("ParallelStream %d\n", i); #endif for (j = 0; j < core_vector_size(vector); j++) { block = core_vector_at(vector, j); biosal_mega_block_print(block); } core_vector_push_back_vector(&concrete_self->mega_blocks, vector); } /* * Update total */ total = 0; for (i = 0; i < core_vector_size(&concrete_self->mega_blocks); i++) { block = core_vector_at(&concrete_self->mega_blocks, i); total += biosal_mega_block_get_entries(block); biosal_mega_block_set_entries_from_start(block, total); } /* * Destroy mega block vectors. */ for (i = 0; i < size; i++) { vector = core_vector_at(&concrete_self->parallel_mega_blocks, i); core_vector_destroy(vector); } core_vector_resize(&concrete_self->parallel_mega_blocks, 0); printf("DEBUG send ACTION_INPUT_COUNT_IN_PARALLEL_REPLY to %d\n", concrete_self->controller); thorium_actor_send_vector(self, concrete_self->controller, ACTION_INPUT_COUNT_IN_PARALLEL_REPLY, &concrete_self->mega_blocks); } }
void biosal_input_stream_receive(struct thorium_actor *actor, struct thorium_message *message) { int tag; int source; uint64_t count; struct biosal_input_stream *concrete_self; int i; int has_sequence; int sequences; int sequence_index; int buffer_size; char *buffer; char *read_buffer; struct biosal_mega_block mega_block; char *file_name_in_buffer; if (thorium_actor_take_action(actor, message)) { return; } concrete_self = thorium_actor_concrete_actor(actor); tag = thorium_message_action(message); source = thorium_message_source(message); buffer = (char *)thorium_message_buffer(message); /* Do nothing if there is an error. * has_error returns the error to the source. */ /* if (biosal_input_stream_has_error(actor, message)) { return; } */ if (tag == ACTION_INPUT_OPEN) { #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG ACTION_INPUT_OPEN\n"); #endif if (concrete_self->open) { concrete_self->error = BIOSAL_INPUT_ERROR_ALREADY_OPEN; thorium_actor_send_reply_int(actor, ACTION_INPUT_OPEN_REPLY, concrete_self->error); thorium_actor_send_to_self_empty(actor, ACTION_ASK_TO_STOP); return; } concrete_self->open = 1; /* TODO: find out the maximum read length in some way */ concrete_self->maximum_sequence_length = BIOSAL_INPUT_MAXIMUM_SEQUENCE_LENGTH; concrete_self->buffer_for_sequence = (char *)core_memory_allocate(concrete_self->maximum_sequence_length, MEMORY_INPUT_STREAM); /*biosal_input_stream_init(actor);*/ #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG biosal_input_stream_receive open %s\n", buffer); #endif /*core_memory_copy(&concrete_self->file_index, buffer, sizeof(concrete_self->file_index));*/ file_name_in_buffer = buffer; printf("stream/%d (node/%d) opens file %s offset %" PRIu64 "\n", thorium_actor_name(actor), thorium_actor_node_name(actor), file_name_in_buffer, concrete_self->starting_offset); #ifdef DEBUG_ISSUE_594 thorium_message_print(message); printf("Buffer %s\n", buffer); #endif concrete_self->file_name = core_memory_allocate(strlen(file_name_in_buffer) + 1, MEMORY_INPUT_STREAM); strcpy(concrete_self->file_name, file_name_in_buffer); biosal_input_proxy_init(&concrete_self->proxy, concrete_self->file_name, concrete_self->starting_offset, concrete_self->ending_offset); concrete_self->proxy_ready = 1; /* Die if there is an error... */ if (biosal_input_stream_has_error(actor, message)) { #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG has error\n"); #endif thorium_actor_send_reply_int(actor, ACTION_INPUT_OPEN_REPLY, concrete_self->error); thorium_actor_send_to_self_empty(actor, ACTION_ASK_TO_STOP); return; } concrete_self->controller = source; /* no error here... */ thorium_actor_send_reply_int(actor, ACTION_INPUT_OPEN_REPLY, concrete_self->error); } else if (tag == ACTION_INPUT_COUNT) { /* count a little bit and yield the worker */ if (concrete_self->count_customer == THORIUM_ACTOR_NOBODY) { concrete_self->count_customer = source; } if (biosal_input_stream_check_open_error(actor, message)) { thorium_actor_send_reply_int64_t(actor, ACTION_INPUT_COUNT_REPLY, concrete_self->error); thorium_actor_send_to_self_empty(actor, ACTION_ASK_TO_STOP); return; } #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG ACTION_INPUT_COUNT received...\n"); #endif i = 0; /* continue counting ... */ has_sequence = 1; while (i < concrete_self->granularity && has_sequence) { has_sequence = biosal_input_proxy_get_sequence(&concrete_self->proxy, concrete_self->buffer_for_sequence); #if 0 printf("Sequence= %s\n", concrete_self->buffer_for_sequence); #endif i++; } sequences = biosal_input_proxy_size(&concrete_self->proxy); #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG ACTION_INPUT_COUNT sequences %d...\n", sequences); #endif if (!has_sequence || sequences % concrete_self->mega_block_size == 0) { biosal_mega_block_init(&mega_block, -1, concrete_self->last_offset, sequences - concrete_self->last_entries, sequences); core_vector_push_back(&concrete_self->mega_blocks, &mega_block); concrete_self->last_entries = sequences; concrete_self->last_offset = biosal_input_proxy_offset(&concrete_self->proxy); thorium_actor_send_int64_t(actor, concrete_self->controller, ACTION_INPUT_COUNT_PROGRESS, sequences); } if (has_sequence) { /*printf("DEBUG yield\n");*/ thorium_actor_send_to_self_empty(actor, ACTION_YIELD); /* notify the controller of our progress... */ } else { thorium_actor_send_to_self_empty(actor, ACTION_INPUT_COUNT_READY); } } else if (tag == ACTION_YIELD_REPLY) { if (biosal_input_stream_check_open_error(actor, message)) { /* * it is not clear that there can be an error when receiving YIELD. error = concrete_self->error; thorium_actor_send_reply_int(actor, ACTION_INPUT_COUNT_REPLY, error); thorium_actor_send_to_self(actor, ACTION_ASK_TO_STOP); */ return; } thorium_actor_send_to_self_empty(actor, ACTION_INPUT_COUNT); } else if (tag == ACTION_INPUT_COUNT_READY) { if (biosal_input_stream_check_open_error(actor, message)) { return; } count = biosal_input_proxy_size(&concrete_self->proxy); thorium_actor_send_vector(actor, concrete_self->count_customer, ACTION_INPUT_COUNT_REPLY, &concrete_self->mega_blocks); printf("input_stream/%d on node/%d counted entries in %s, %" PRIu64 "\n", thorium_actor_name(actor), thorium_actor_node_name(actor), concrete_self->file_name, count); } else if (tag == ACTION_INPUT_CLOSE) { #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG destroy proxy\n"); #endif concrete_self->error = BIOSAL_INPUT_ERROR_NO_ERROR; if (biosal_input_stream_check_open_error(actor, message)) { concrete_self->error = BIOSAL_INPUT_ERROR_FILE_NOT_OPEN; thorium_message_init(message, ACTION_INPUT_CLOSE_REPLY, sizeof(concrete_self->error), &concrete_self->error); thorium_actor_send(actor, source, message); thorium_actor_send_to_self_empty(actor, ACTION_ASK_TO_STOP); return; } thorium_message_init(message, ACTION_INPUT_CLOSE_REPLY, sizeof(concrete_self->error), &concrete_self->error); thorium_actor_send(actor, source, message); thorium_actor_send_to_self_empty(actor, ACTION_ASK_TO_STOP); #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("actor %d sending ACTION_INPUT_CLOSE_REPLY to %d\n", thorium_actor_name(actor), source); #endif } else if (tag == ACTION_INPUT_GET_SEQUENCE) { if (biosal_input_stream_check_open_error(actor, message)) { /* the error management could be better. */ concrete_self->error = BIOSAL_INPUT_ERROR_FILE_NOT_OPEN; thorium_message_init(message, ACTION_INPUT_GET_SEQUENCE_REPLY, sizeof(concrete_self->error), &concrete_self->error); thorium_actor_send(actor, source, message); return; } sequence_index = biosal_input_proxy_size(&concrete_self->proxy); /* TODO it would be clearer to use a struct to pack a int and a char [] * then to use the code below. */ read_buffer = concrete_self->buffer_for_sequence + sizeof(sequence_index); has_sequence = biosal_input_proxy_get_sequence(&concrete_self->proxy, read_buffer); if (!has_sequence) { thorium_message_init(message, ACTION_INPUT_GET_SEQUENCE_END, 0, NULL); thorium_actor_send(actor, source, message); return; } buffer_size = sizeof(sequence_index) + strlen(read_buffer) + 1; core_memory_copy(concrete_self->buffer_for_sequence, &sequence_index, sizeof(sequence_index)); thorium_message_init(message, ACTION_INPUT_GET_SEQUENCE_REPLY, buffer_size, concrete_self->buffer_for_sequence); thorium_actor_send(actor, source, message); } else if (tag == ACTION_INPUT_PUSH_SEQUENCES) { biosal_input_stream_push_sequences(actor, message); } else if (tag == ACTION_ASK_TO_STOP) { thorium_actor_send_to_self_empty(actor, ACTION_STOP); thorium_actor_send_range_empty(actor, &concrete_self->parallel_streams, ACTION_ASK_TO_STOP); thorium_actor_send_reply_empty(actor, ACTION_ASK_TO_STOP_REPLY); } else if (tag == ACTION_INPUT_STREAM_RESET) { /* fail silently */ if (!concrete_self->open) { thorium_actor_send_reply_empty(actor, ACTION_INPUT_STREAM_RESET_REPLY); return; } #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG ACTION_INPUT_STREAM_RESET\n"); #endif biosal_input_proxy_destroy(&concrete_self->proxy); biosal_input_proxy_init(&concrete_self->proxy, concrete_self->file_name, concrete_self->starting_offset, concrete_self->ending_offset); thorium_actor_send_reply_empty(actor, ACTION_INPUT_STREAM_RESET_REPLY); } else if (tag == ACTION_PUSH_SEQUENCE_DATA_BLOCK_REPLY) { thorium_actor_send_to_supervisor_int(actor, ACTION_INPUT_PUSH_SEQUENCES_REPLY, source); } }