void esvg::Document::generateAnImage(ivec2 _size, draw::Image& _output)
{
generateAnImage(_size.x(), _size.y());
_output.resize(_size);
draw::Color tmpp(0,0,0,0);
_output.setFillColor(tmpp);
_output.clear();
if(NULL != m_renderedElement) {
uint8_t* pointerOnData = m_renderedElement->getDataPointer();
int32_t sizeData = m_renderedElement->getDataSize();
uint8_t* tmpOut = (uint8_t*)_output.getTextureDataPointer();
memcpy(tmpOut, pointerOnData, sizeData);
}
}
double BivariateDecomposition::debug(Vector * point, Vector * dp2prime, Vector * gradG2){
/////////////////////////////// ------------------- for debug only by Quan ----
static int iii =1;
if (iii==1){
iii++;
ofstream file_coeff_2("Bivariate_surface_fitting_debug.out");
int numOfGridPlanes = numAxes*(numAxes-1)/2;
for (int ii=0; ii<numOfGridPlanes; ii++) {
file_coeff_2 <<"\n the "<<ii<<" th plane: "<<endln;
PrincipalAxis * axis_1 = theGridPlanes[ii]->getAxisPtr(1); // first axis
PrincipalAxis * axis_2 = theGridPlanes[ii]->getAxisPtr(2); // second axis
int m = axis_1->getExperimentalPointRule()->getNumberOfPoints();
int n = axis_2->getExperimentalPointRule()->getNumberOfPoints();
Matrix * valueOnGrid = theGridPlanes[ii]->getGridValuesPtr();
Matrix * valueG2OnGrid=0;
if(isTimeVariant){
valueG2OnGrid = theGridPlanes[ii]->getGridValuesG2Ptr();
}
double x_begin = axis_1->getExperimentalPointRule()->getBeginOfGrid();
double x_end = axis_1->getExperimentalPointRule()->getEndOfGrid();
double x_interval = (x_end-x_begin)/(m-1);
double y_begin= axis_2->getExperimentalPointRule()->getBeginOfGrid();
double y_end = axis_2->getExperimentalPointRule()->getEndOfGrid();
double y_interval = (y_end-y_begin)/(n-1);
Vector * vector1 = axis_1->getAxisDirection();
Vector * vector2 = axis_2->getAxisDirection();
Vector tmpp(50); tmpp.Zero();
file_coeff_2.precision(16);
for( int pointX = 0; pointX < m; pointX++){
for( int pointY = 0; pointY < n; pointY++){
double x = x_begin + pointX*x_interval;
double y = y_begin + pointY*y_interval;
tmpp = x*(*vector1)/vector1->Norm()+y*(*vector2)/vector2->Norm();
file_coeff_2<<"x:"<<x<<"y:"<<y<<endln;
file_coeff_2<<"grid value G saved in the valueOnGrid is: "<<(*valueOnGrid)(pointX,pointY)<<endln;
double gValue = this->getFunctionValue(&tmpp);
file_coeff_2<<"grid value G computed by the response surface is: "<<gValue<<endln;
file_coeff_2<<"grid value G2 saved in the valueOnGrid is: "<<(*valueG2OnGrid)(pointX,pointY)<<endln;
double g2Value = this->getFunctionValue2(&tmpp,dp2prime,gradG2);
file_coeff_2<<"grid value G2 computed by the response surface is: "<<g2Value<<endln;
} //pointY
}//pointX
} //ii =1:numOfGridPlanes
//*/
file_coeff_2.close();
}// if iii==1
////////////////////------ end debug -----------------
return 0;
};
SurfaceScalarJump<EvalT, Traits>::
SurfaceScalarJump(const Teuchos::ParameterList& p,
const Teuchos::RCP<Albany::Layouts>& dl) :
cubature (p.get<Teuchos::RCP<Intrepid2::Cubature<RealType, Intrepid2::FieldContainer_Kokkos<RealType, PHX::Layout,PHX::Device> >>>("Cubature")),
intrepidBasis (p.get<Teuchos::RCP<Intrepid2::Basis<RealType, Intrepid2::FieldContainer_Kokkos<RealType, PHX::Layout, PHX::Device>>>>("Intrepid2 Basis"))
// scalar (p.get<std::string>("Nodal Scalar Name"),dl->node_scalar),
// scalarJump (p.get<std::string>("Scalar Jump Name"),dl->qp_scalar),
// scalarAverage (p.get<std::string>("Scalar Average Name"),dl->qp_scalar)
{
// this->addDependentField(scalar);
// this->addEvaluatedField(scalarJump);
// this->addEvaluatedField(scalarAverage);
this->setName("Surface Scalar Jump"+PHX::typeAsString<EvalT>());
haveTemperature = false;
haveTransport = false;
haveHydroStress = false;
havePorePressure = false;
if (p.isType<std::string>("Nodal Pore Pressure Name")) {
havePorePressure = true;
PHX::MDField<ScalarT,Cell,Vertex>
tp(p.get<std::string>("Nodal Pore Pressure Name"), dl->node_scalar);
nodalPorePressure = tp;
this->addDependentField(nodalPorePressure);
PHX::MDField<ScalarT,Cell,QuadPoint>
tjp(p.get<std::string>("Jump of Pore Pressure Name"), dl->qp_scalar);
jumpPorePressure = tjp;
this->addEvaluatedField(jumpPorePressure);
PHX::MDField<ScalarT,Cell,QuadPoint>
tmpp(p.get<std::string>("MidPlane Pore Pressure Name"), dl->qp_scalar);
midPlanePorePressure = tmpp;
this->addEvaluatedField(midPlanePorePressure);
}
if (p.isType<std::string>("Nodal Temperature Name")) {
haveTemperature = true;
PHX::MDField<ScalarT,Cell,Vertex>
tf(p.get<std::string>("Nodal Temperature Name"), dl->node_scalar);
nodalTemperature = tf;
this->addDependentField(nodalTemperature);
PHX::MDField<ScalarT,Cell,QuadPoint>
tt(p.get<std::string>("Jump of Temperature Name"), dl->qp_scalar);
jumpTemperature = tt;
this->addEvaluatedField(jumpTemperature);
PHX::MDField<ScalarT,Cell,QuadPoint>
tmt(p.get<std::string>("MidPlane Temperature Name"), dl->qp_scalar);
midPlaneTemperature = tmt;
this->addEvaluatedField(midPlaneTemperature);
}
if (p.isType<std::string>("Nodal Transport Name")) {
haveTransport = true;
PHX::MDField<ScalarT,Cell,Vertex>
ttp(p.get<std::string>("Nodal Transport Name"), dl->node_scalar);
nodalTransport = ttp;
this->addDependentField(nodalTransport);
PHX::MDField<ScalarT,Cell,QuadPoint>
tjtp(p.get<std::string>("Jump of Transport Name"), dl->qp_scalar);
jumpTransport= tjtp;
this->addEvaluatedField(jumpTransport);
PHX::MDField<ScalarT,Cell,QuadPoint>
tjtm(p.get<std::string>("MidPlane Transport Name"), dl->qp_scalar);
midPlaneTransport = tjtm;
this->addEvaluatedField(midPlaneTransport);
}
if (p.isType<std::string>("Nodal HydroStress Name")) {
haveHydroStress = true;
PHX::MDField<ScalarT,Cell,Vertex>
ths(p.get<std::string>("Nodal HydroStress Name"), dl->node_scalar);
nodalHydroStress = ths;
this->addDependentField(nodalHydroStress);
PHX::MDField<ScalarT,Cell,QuadPoint>
tjths(p.get<std::string>("Jump of HydroStress Name"), dl->qp_scalar);
jumpHydroStress= tjths;
this->addEvaluatedField(jumpHydroStress);
PHX::MDField<ScalarT,Cell,QuadPoint>
tmpths(p.get<std::string>("MidPlane HydroStress Name"), dl->qp_scalar);
midPlaneHydroStress= tmpths;
this->addEvaluatedField(midPlaneHydroStress);
}
std::vector<PHX::DataLayout::size_type> dims;
dl->node_vector->dimensions(dims);
worksetSize = dims[0];
numNodes = dims[1];
numDims = dims[2];
numQPs = cubature->getNumPoints();
numPlaneNodes = numNodes / 2;
numPlaneDims = numDims - 1;
#ifdef ALBANY_VERBOSE
std::cout << "in Surface Scalar Jump" << std::endl;
std::cout << " numPlaneNodes: " << numPlaneNodes << std::endl;
std::cout << " numPlaneDims: " << numPlaneDims << std::endl;
std::cout << " numQPs: " << numQPs << std::endl;
std::cout << " cubature->getNumPoints(): " << cubature->getNumPoints() << std::endl;
std::cout << " cubature->getDimension(): " << cubature->getDimension() << std::endl;
#endif
// Allocate Temporary FieldContainers
refValues.resize(numPlaneNodes, numQPs);
refGrads.resize(numPlaneNodes, numQPs, numPlaneDims);
refPoints.resize(numQPs, numPlaneDims);
refWeights.resize(numQPs);
// Pre-Calculate reference element quantitites
cubature->getCubature(refPoints, refWeights);
intrepidBasis->getValues(refValues, refPoints, Intrepid2::OPERATOR_VALUE);
intrepidBasis->getValues(refGrads, refPoints, Intrepid2::OPERATOR_GRAD);
}
etk::Matrix2 etk::Matrix2::operator- (const etk::Matrix2& _obj) const {
etk::Matrix2 tmpp(*this);
tmpp += _obj;
return tmpp;
}
void KIconEditGrid::mouseMoveEvent( QMouseEvent *e )
{
if(!e)
return;
int row = findRow( e->pos().y() );
int col = findCol( e->pos().x() );
int cell = row * numCols() + col;
QPoint tmpp(col, row);
if(tmpp == end)
return;
if(img->valid(col, row))
{
//debug("%d X %d", col, row);
emit poschanged(col, row);
emit xposchanged((col*scaling())+scaling()/2); // for the rulers
emit yposchanged((row*scaling())+scaling()/2);
}
if(ispasting && !btndown && img->valid(col, row))
{
if( (col + cbsize.width()) > (numCols()-1) )
insrect.setX(numCols()-insrect.width());
else
insrect.setX(col);
if( (row + cbsize.height()) > (numRows()-1) )
insrect.setY(numRows()-insrect.height());
else
insrect.setY(row);
insrect.setSize(cbsize);
//debug("Moving: %d x %d", insrect.width(), insrect.height());
start = insrect.topLeft();
end = insrect.bottomRight();
drawRect(false);
return;
}
if(!img->valid(col, row) || !btndown)
return;
end.setX(col);
end.setY(row);
if(isselecting)
{
if(tool == SelectRect)
drawRect(false);
else
drawEllipse(false);
return;
}
switch( tool )
{
case Eraser:
currentcolor = TRANSPARENT;
case Freehand:
{
setColor( cell, currentcolor );
//img.setPixel(col, row, currentcolor.pixel());
if ( selected != cell )
{
modified = true;
int prevSel = selected;
selected = cell;
repaint((prevSel%numCols())*cellsize,(prevSel/numCols())*cellsize, cellsize, cellsize, false);
repaint(col*cellsize,row*cellsize, cellsize, cellsize, false);
//updateCell( prevSel/numCols(), prevSel%numCols(), FALSE );
//updateCell( row, col, FALSE );
*((uint*)img->scanLine(row) + col) = (colorAt(cell));
}
break;
}
case Find:
{
iconcolors.closestMatch(colorAt(cell));
if ( selected != cell )
{
int prevSel = selected;
selected = cell;
repaint((prevSel%numCols())*cellsize,(prevSel/numCols())*cellsize, cellsize, cellsize, false);
repaint(col*cellsize,row*cellsize, cellsize, cellsize, false);
//updateCell( prevSel/numCols(), prevSel%numCols(), FALSE );
//updateCell( row, col, FALSE );
}
break;
}
case Ellipse:
case Circle:
case FilledEllipse:
case FilledCircle:
{
drawEllipse(false);
break;
}
//case Select:
case FilledRect:
case Rect:
{
drawRect(false);
break;
}
case Line:
{
drawLine(false);
break;
}
case Spray:
{
drawSpray(QPoint(col, row));
modified = true;
break;
}
default:
break;
}
p = *img;
emit changed(QPixmap(p));
//emit colorschanged(numColors(), data());
}
int EMclustering::EM(int k, int *IDX, bool spatial, bool att)
{
clusternum = k;
MatrixXf x;
/*if(spatial)
{
if(att)
{
x.resize(4,dataSize);
for(int i=0;i<dataSize;i++)
{
x(0,i) = dataPos[i][0];
x(1,i) = dataPos[i][1];
x(2,i) = dataPos[i][2];
x(3,i) = dataDen[i];
}
}
else
{
x.resize(6,dataSize);
for(int i=0;i<dataSize;i++)
{
x(0,i) = dataPos[i][0];
x(1,i) = dataPos[i][1];
x(2,i) = dataPos[i][2];
x(3,i) = dataVel[i][0];
x(4,i) = dataVel[i][1];
x(5,i) = dataVel[i][2];
}
}
}
else
{*/
if(att)
{
x.resize(1,dataDen.size());
for(int i=0;i<dataDen.size();i++)
{
x(0,i) = dataDen[i];
}
//cerr<<x;
//cerr<<endl;
if(k>dataDen.size())
return -1;
}
else
{
x.resize(3,dataSize);
for(int i=0;i<dataSize;i++)
{
x(0,i) = dataVel[i][0];//fabs(cos(-PI/4)*dataVel[i][0] - sin(-PI/4)*dataVel[i][1]);
x(1,i) = dataVel[i][1];//fabs(sin(-PI/4)*dataVel[i][0] + cos(-PI/4)*dataVel[i][1]);
x(2,i) = dataVel[i][2];
}
if(k>dataSize)
return -1;
}
//}
//cout<<"EM for Gaussian mixture: running ... "<<endl;
//cerr<<x<<endl;
MatrixXf r =initialization(x,k);// kmeans(x,k);//
//cerr<<"Initialization is Done"<<endl;//cerr<<r<<endl;
VectorXi label(r.rows());
for(int i=0;i<r.rows();i++)
{
int index;
float tmp1 = r.row(i).maxCoeff(&index);
label(i) = index;
}//cerr<<label<<endl;
VectorXi tmpp(label.size());
VectorXi tmp2 = unique(label,tmpp);
int tmpd = tmp2.size(); //cerr<<tmpd<<endl;
MatrixXf tmpr(r.rows(),tmpd);
for(int i=0;i<tmpd;i++)
{
tmpr.col(i) = r.col(tmp2(i));
}//cerr<<"done1"<<endl;
r.resize(r.rows(),tmpd);
r = tmpr;//cerr<<r.cols()<<endl;
float tol = 1e-10;
int max = 300;
double llh = -9e+9;
bool converged = false;
int t = 1;
//cerr<<"done1"<<endl;
//gaussian_model model;
int clusternum_error;
MatrixXf tmpmodel;
while(!converged&&t<max)
{
t = t + 1;
gaussian_model model = maximization(x,r);//cerr<<t<<" "<<"max"<<endl;
float tmpllh = llh;
r = expectation(x,model,llh);//cerr<<t<<" "<<"exp"<<endl;
for(int i=0;i<r.rows();i++)
{
int index;
float tmp1 = r.row(i).maxCoeff(&index);
label(i) = index;
}
VectorXi u = unique(label,tmpp);//cerr<<t<<" "<<u.size()<<" "<<r.cols()<<" "<<r.rows()<<endl;
clusternum_error = clusternum - u.size();
if(r.cols()!=u.size())
{
/* tmpr.resize(r.rows(),u.size());
for(int i=0;i<u.size();i++)
{
tmpr.col(i) = r.col(u(i));
}
r.resize(r.rows(),u.size());
r = tmpr;//cerr<<"r"<<endl;*/
}
else
{
if((llh - tmpllh)<tol*abs(llh))
converged = true;
else
converged = false;
}
//cerr<<"t"<<t<<endl;
//return_model = model;
tmpmodel.resize(model.mu.rows(),model.mu.cols());
//return_model = model.mu;
tmpmodel = model.mu;
u.resize(0);
//cerr<<tmpmodel<<endl;
}
/*ofstream off2("rr");
off2<<r.row(0)<<endl;
for(int i=1;i<r.rows();i++)
if(r.row(i)!=r.row(i-1))
{off2<<x.col(i)<<" ";
off2<<r.row(i)<<endl;}
off2.close();*/
cerr<<clusternum_error<<endl;
return_model = tmpmodel;
//cerr<<label<<endl;
if (converged)
cerr<<"Converged in "<<t-1<<endl;
else
cerr<<max<<endl;
//cerr<<t-1<<endl;
for(int i=0;i<label.size();i++)
{
IDX[i] = label(i);
//cerr<<IDX[i]<<" ";
}//cerr<<endl;
//cerr<<label.size()<<endl;
x.resize(0,0);
r.resize(0,0);
tmpr.resize(0,0);
tmpmodel.resize(0,0);
label.resize(0);
tmpp.resize(0);
tmp2.resize(0);
return clusternum_error;
}