boolean isBigWigTable(char *table)
/* Return TRUE if table corresponds to a bigWig file. */
{
struct trackDb *tdb = hashFindVal(fullTableToTdbHash, table);
if (tdb)
return tdbIsBigWig(tdb);
else
return trackIsType(database, table, curTrack, "bigWig", ctLookupName);
}
boolean isHalTable(char *table)
/* Return TRUE if table corresponds to a HAL file. */
{
if (isHubTrack(table))
{
struct trackDb *tdb = hashFindVal(fullTableToTdbHash, table);
return startsWithWord("halSnake", tdb->type);
}
else
return trackIsType(database, table, curTrack, "halSnake", ctLookupName);
}
boolean isVcfTable(char *table, boolean *retIsTabix)
/* Return TRUE if table corresponds to a VCF file.
* If retIsTabix is non-NULL, set *retIsTabix to TRUE if this is vcfTabix (not just vcf). */
{
boolean isVcfTabix = FALSE, isVcf = FALSE;
struct trackDb *tdb = hashFindVal(fullTableToTdbHash, table);
if (tdb)
{
isVcfTabix = startsWithWord("vcfTabix", tdb->type);
isVcf = startsWithWord("vcf", tdb->type);
}
else
{
isVcfTabix = trackIsType(database, table, curTrack, "vcfTabix", ctLookupName);
if (!isVcfTabix)
isVcf = trackIsType(database, table, curTrack, "vcf", ctLookupName);
}
if (retIsTabix)
*retIsTabix = isVcfTabix;
return (isVcfTabix || isVcf);
}
boolean isBedGraph(char *table)
/* Return TRUE if table is specified as a bedGraph in the current database's
* trackDb. */
{
return trackIsType(database, table, NULL, "bedGraph", ctLookupName);
}
