// Can use this function to get likelihood with a topgauss
double TopGauss::get(MixtureGD & UBM,FeatureServer &fs,String & featureFilename,Config & config){
	StatServer ss(config);
	String labelSelectedFrames =config.getParam("labelSelectedFrames");
	unsigned long begin=fs.getFirstFeatureIndexOfASource(featureFilename);
	fs.seekFeature(begin);
	SegServer segmentsServer;
	LabelServer labelServer;
	initializeClusters(featureFilename,segmentsServer,labelServer,config);
	//	__android_log_print(ANDROID_LOG_DEBUG, "TopGauss::get", " Feature file  %s  \n", featureFilename.c_str());

	verifyClusterFile(segmentsServer,fs,config);
	unsigned long codeSelectedFrame=labelServer.getLabelIndexByString(labelSelectedFrames);	
	SegCluster& selectedSegments=segmentsServer.getCluster(codeSelectedFrame);  
	MixtureGDStat &acc=ss.createAndStoreMixtureStat(UBM);
	
	Seg *seg;          // current selected segment
	selectedSegments.rewind();		
	unsigned long t=0; //cnt frames
	acc.resetLLK();
	unsigned long idxBegin=0;
	while((seg=selectedSegments.getSeg())!=NULL){  
		unsigned long begin=seg->begin()+fs.getFirstFeatureIndexOfASource(seg->sourceName()); 
		fs.seekFeature(begin);
		Feature f;
		idxBegin=this->frameToIdx(t);
		for (unsigned long idxFrame=0;idxFrame<seg->length();idxFrame++){
			fs.readFeature(f); 
			//unsigned long idx=this->frameToIdx(t);
			unsigned long nbg=_nbg[t];	
			ULongVector index;
			double sumNonSelectedWeights=_snsw[t];
			double sumNonSelectedLLK=_snsl[t];
			for (unsigned long i=0;i<nbg;i++) {
				index.addValue(_idx[idxBegin+i]);
			}		
			char c[100];
			sprintf(c,"%d",(int)index.size());
			config.setParam("topDistribsCount",c); // this should be high enough	
			if (t==0) {acc.computeAndAccumulateLLK(f,1.0,DETERMINE_TOP_DISTRIBS);acc.resetLLK();} // to remove in ALIZE, this is to init the LKvector
			ss.setTopDistribIndexVector(index, sumNonSelectedWeights, sumNonSelectedLLK);
			acc.computeAndAccumulateLLK(f,1.0,USE_TOP_DISTRIBS);
			idxBegin+=nbg;
			t++;
		}	
	}	
	//ss.deleteMixtureStat(acc);
	if (t!=_nt || idxBegin !=_nbgcnt) cout << "W: t("<<t<<") != _nt(" <<_nt<<")"<<"W: idxBegin("<<idxBegin<<") != _nbgcnt(" <<_nbgcnt<<")"<<endl;
return acc.getMeanLLK();
}
void cms(String & featureFileName,FeatureServer &fs,Config &config) {
        unsigned long begin=fs.getFirstFeatureIndexOfASource(featureFileName);
	fs.seekFeature(begin);
	SegServer segmentsServer;
	LabelServer labelServer;
	initializeClusters(featureFileName,segmentsServer,labelServer,config);
	verifyClusterFile(segmentsServer,fs,config);
	unsigned long codeSelectedFrame=labelServer.getLabelIndexByString(config.getParam("labelSelectedFrames"));
	SegCluster& selectedSegments=segmentsServer.getCluster(codeSelectedFrame);  
	selectedSegments.rewind();  
	RealVector <double> mean,cov;
	FrameAccGD frameAccu;
	frameAccu.reset();   
	accumulateStatFrame(frameAccu,fs, selectedSegments, config);
	mean = frameAccu.getMeanVect();     // Get the mean vector
	cov  = frameAccu.getStdVect();      // Get the std vector
	computeZeroOne(mean,cov,fs, selectedSegments, config);	
}
// Main init function
double TopGauss::compute(MixtureGD & UBM,FeatureServer &fs,String & featureFilename,Config & config){
	StatServer ss(config);
	MixtureGDStat &acc=ss.createAndStoreMixtureStat(UBM);	
	unsigned long _mixsize=UBM.getDistribCount();
	String labelSelectedFrames =config.getParam("labelSelectedFrames");
	unsigned long begin=fs.getFirstFeatureIndexOfASource(featureFilename);
	fs.seekFeature(begin);
	SegServer segmentsServer;
	LabelServer labelServer;
	initializeClusters(featureFilename,segmentsServer,labelServer,config);
	//	__android_log_print(ANDROID_LOG_DEBUG, "TopGauss::compute", " Feature file  %s  \n", featureFilename.c_str());

	verifyClusterFile(segmentsServer,fs,config);
	unsigned long codeSelectedFrame=labelServer.getLabelIndexByString(labelSelectedFrames);	
	SegCluster& selectedSegments=segmentsServer.getCluster(codeSelectedFrame);  
	acc.resetLLK();
	double topD=config.getParam("topGauss").toDouble();
	if (verbose) {if(topD<1.0) cout << "LLK %="<< topD << "% ";else cout << "Top-"<<topD<<" ";}
	
	// Class values
	_nt=totalFrame(selectedSegments);	
	_nbg.setSize(_nt); _idx.setSize(0);_snsw.setSize(0); _snsl.setSize(0);
	_nbg.setAllValues(0); _idx.setAllValues(0);_snsw.setAllValues(0.0);_snsl.setAllValues(0.0);
	_nbgcnt=0;
	Seg *seg;          // current selected segment
	selectedSegments.rewind();		
	unsigned long t=0; //cnt frames
	while((seg=selectedSegments.getSeg())!=NULL){                       	
		unsigned long begin=seg->begin()+fs.getFirstFeatureIndexOfASource(seg->sourceName()); 
		fs.seekFeature(begin);
		Feature f;
		for (unsigned long idxFrame=0;idxFrame<seg->length();idxFrame++){
			fs.readFeature(f); 
			double llk=acc.computeAndAccumulateLLK(f,1.0,DETERMINE_TOP_DISTRIBS);
			const LKVector &topV=ss.getTopDistribIndexVector();
			double lk_tot=exp(llk);
			
			double val=0.0;
			if (topD<1.0) {
				for(unsigned long j=0;j<_mixsize;j++){
					if (val > topD*lk_tot) break;
					val+=(topV[j].lk);
					_nbg[t]++;
				}
			} else _nbg[t]=(unsigned long)topD;
			_nbgcnt+=_nbg[t];
			 
			double snsw=1.0;
			double snsl=lk_tot;					
			for(unsigned long j=0;j<_nbg[t];j++) {
				_idx.addValue(topV[j].idx);    		
				snsw -=UBM.weight(topV[j].idx);
				snsl -=topV[j].lk;
			}

			_snsw.addValue(snsw);
			if (snsl < EPS_LK)
				_snsl.addValue(EPS_LK);
			else _snsl.addValue(snsl);
			t++;
		}		
	}
	if (t!=_nt) cout << "W: t("<<t<<") != _nt(" <<_nt<<")"<<endl;
return acc.getMeanLLK();
}