static void
xcreate (mxArray *mnode, int i, VlHIKMNode *node)
{
int node_K = vl_ikm_get_K (node->filter) ;
int M = vl_ikm_get_ndims (node->filter) ;
vl_ikm_acc const *centers = vl_ikm_get_centers (node->filter) ;
mxArray *mcenters ;
mcenters = mxCreateNumericMatrix (M, node_K, mxINT32_CLASS, mxREAL);
memcpy (mxGetPr(mcenters), centers, sizeof(vl_ikm_acc) * M * node_K) ;
mxSetField (mnode, i, "centers", mcenters) ;
if (node->children) {
mxArray * msub ;
const char * field_names[] = {"centers", "sub" } ;
mwSize dims [2] ;
int k ;
dims[0] = 1 ;
dims[1] = node_K ;
msub = mxCreateStructArray (2, dims, 2, field_names) ;
for (k = 0 ; k < node_K ; ++k) {
xcreate (msub, k, node -> children [k]) ;
}
mxSetField (mnode, i, "sub", msub) ;
}
}
void ikm()
{
const vl_size data_dim = 2;
const vl_size num_data = 1000;
vl_uint8 data[data_dim * num_data] = { 0, };
for (vl_size i = 0; i < data_dim * num_data; ++i)
data[i] = (vl_uint8)std::floor((((float)std::rand() / RAND_MAX) * 255) + 0.5f);
//
std::cout << "start processing ..." << std::endl;
const vl_size num_clusters = 3;
const VlIKMAlgorithms algorithm = VL_IKM_LLOYD; // VL_IKM_LLOYD, VL_IKM_ELKAN.
const vl_size num_max_iterations = 100;
VlIKMFilt *ikm = vl_ikm_new(algorithm);
vl_ikm_set_max_niters(ikm, num_max_iterations);
// initialization.
#if 1
vl_ikm_init_rand(ikm, data_dim, num_clusters);
#elif 0
vl_ikm_init_rand_data(ikm, data, data_dim, num_data, num_clusters);
#else
vl_ikm_acc init_centers[data_dim * num_clusters] = { 0, };
for (vl_size i = 0; i < data_dim * num_clusters; ++i)
init_centers[i] = (vl_ikm_acc)std::floor((((float)std::rand() / RAND_MAX) * 255) + 0.5f);
vl_ikm_init(ikm, init_centers, data_dim, num_clusters);
#endif
// training.
if (-1 != vl_ikm_train(ikm, data, num_data))
{
const vl_ikmacc_t *centers = vl_ikm_get_centers(ikm);
for (int i = 0; i < num_clusters; ++i)
{
std::cout << '(';
for (int j = 0; j < data_dim; ++j)
{
if (j) std::cout << ',';
std::cout << (int)centers[i * data_dim + j];
}
std::cout << ')' << std::endl;
}
//
{
vl_uint assignments[num_data] = { 0, };
vl_ikm_push(ikm, assignments, data, num_data);
for (int i = 0; i < num_data; ++i)
{
std::cout << '(';
for (int j = 0; j < data_dim; ++j)
{
if (j) std::cout << ',';
std::cout << (int)data[i * data_dim + j]; // TODO [check] >> is it correct?
}
std::cout << ") => " << assignments[i] << std::endl;
}
}
// testing.
{
vl_uint8 test_sample[data_dim] = { 0, };
for (vl_size i = 0; i < data_dim; ++i)
test_sample[i] = (vl_uint8)std::floor((((float)std::rand() / RAND_MAX) * 255) + 0.5f);
const vl_uint assignment = vl_ikm_push_one(centers, test_sample, data_dim, num_clusters);
}
}
else
{
std::cerr << "an overflow may have occurred." << std::endl;
}
std::cout << "end processing ..." << std::endl;
//
if (ikm)
{
vl_ikm_delete(ikm);
ikm = NULL;
}
}
/* driver */
void mexFunction (int nout, mxArray * out[], int nin, const mxArray * in[])
{
enum {IN_X = 0, IN_K, IN_END} ;
enum {OUT_C = 0, OUT_I} ;
int opt ;
int next = IN_END ;
mxArray const *optarg ;
int M, N, K = 0 ;
int err = 0 ;
vl_uint *asgn = 0 ;
vl_ikm_acc *centers = 0 ;
vl_uint8 *data ;
int method_type = VL_IKM_LLOYD ;
int max_niters = 200 ;
int verb = 0 ;
VlIKMFilt *ikmf ;
VL_USE_MATLAB_ENV ;
/* ------------------------------------------------------------------
* Check the arguments
* --------------------------------------------------------------- */
if (nin < 2) {
mexErrMsgTxt ("At least two arguments required.");
}
else if (nout > 2) {
mexErrMsgTxt ("Too many output arguments.");
}
if (mxGetClassID (in[IN_X]) != mxUINT8_CLASS) {
mexErrMsgTxt ("X must be of class uint8");
}
M = mxGetM (in[IN_X]); /* n of components */
N = mxGetN (in[IN_X]); /* n of elements */
if (!vlmxIsPlainScalar (in[IN_K]) ||
(K = (int) *mxGetPr(in[IN_K])) < 1 ||
K > N ) {
mexErrMsgTxt ("K must be a positive integer not greater than the number of data.");
}
while ((opt = vlmxNextOption (in, nin, options, &next, &optarg)) >= 0) {
char buf [1024] ;
switch (opt) {
case opt_verbose :
++ verb ;
break ;
case opt_max_niters :
if (!vlmxIsPlainScalar(optarg) || (max_niters = (int) *mxGetPr(optarg)) < 1) {
mexErrMsgTxt("MaxNiters must be not smaller than 1.") ;
}
break ;
case opt_method :
if (!vlmxIsString (optarg, -1)) {
mexErrMsgTxt("'Method' must be a string.") ;
}
if (mxGetString (optarg, buf, sizeof(buf))) {
mexErrMsgTxt("Option argument too long.") ;
}
if (strcmp("lloyd", buf) == 0) {
method_type = VL_IKM_LLOYD ;
} else if (strcmp("elkan", buf) == 0) {
method_type = VL_IKM_ELKAN ;
} else {
mexErrMsgTxt("Unknown method type.") ;
}
break ;
default :
abort() ;
}
}
/* ------------------------------------------------------------------
* Do the job
* --------------------------------------------------------------- */
if (verb) {
char const * method_name = 0 ;
switch (method_type) {
case VL_IKM_LLOYD: method_name = "Lloyd" ; break ;
case VL_IKM_ELKAN: method_name = "Elkan" ; break ;
default :
abort() ;
}
mexPrintf("ikmeans: MaxInters = %d\n", max_niters) ;
mexPrintf("ikmeans: Method = %s\n", method_name) ;
}
data = (vl_uint8*) mxGetPr(in[IN_X]) ;
ikmf = vl_ikm_new (method_type) ;
vl_ikm_set_verbosity (ikmf, verb) ;
vl_ikm_set_max_niters (ikmf, max_niters) ;
vl_ikm_init_rand_data (ikmf, data, M, N, K) ;
err = vl_ikm_train (ikmf, data, N) ;
if (err) mexWarnMsgTxt("ikmeans: possible overflow!") ;
/* ------------------------------------------------------------------
* Return results
* --------------------------------------------------------------- */
{
out[OUT_C] = mxCreateNumericMatrix (M, K, mxINT32_CLASS, mxREAL) ;
centers = mxGetData (out[OUT_C]) ;
memcpy (centers, vl_ikm_get_centers (ikmf), sizeof(vl_ikm_acc) * M * K) ;
}
if (nout > 1) {
int j ;
out[OUT_I] = mxCreateNumericMatrix (1, N, mxUINT32_CLASS, mxREAL) ;
asgn = mxGetData (out[OUT_I]) ;
vl_ikm_push (ikmf, asgn, data, N) ;
for (j = 0 ; j < N ; ++j)
++ asgn [j] ;
}
vl_ikm_delete (ikmf) ;
if (verb) {
mexPrintf("ikmeans: done\n") ;
}
}
PyObject * vl_ikmeans_python(
PyArrayObject & inputData,
int K,
int max_niters,
char * method,
int verb)
{
// check types
assert(inputData.descr->type_num == PyArray_UBYTE);
assert(inputData.flags & NPY_FORTRAN);
npy_intp M, N;
int err = 0;
vl_uint8 * data;
VlIKMFilt *ikmf;
M = inputData.dimensions[0]; /* n of components */
N = inputData.dimensions[1]; /* n of elements */
// K must be a positive integer not greater than the number of data.
assert(K>0 && K<=N);
int method_type = VL_IKM_LLOYD;
if (strcmp("lloyd", method) == 0) {
method_type = VL_IKM_LLOYD;
} else if (strcmp("elkan", method) == 0) {
method_type = VL_IKM_ELKAN;
} else {
assert(0);
}
/* ------------------------------------------------------------------
* Do the job
* --------------------------------------------------------------- */
if (verb) {
char const * method_name = 0;
switch (method_type) {
case VL_IKM_LLOYD:
method_name = "Lloyd";
break;
case VL_IKM_ELKAN:
method_name = "Elkan";
break;
default:
assert (0);
}
printf("ikmeans: MaxInters = %d\n", max_niters);
printf("ikmeans: Method = %s\n", method_name);
}
data = (vl_uint8*) inputData.data;
ikmf = vl_ikm_new(method_type);
vl_ikm_set_verbosity(ikmf, verb);
vl_ikm_set_max_niters(ikmf, max_niters);
vl_ikm_init_rand_data(ikmf, data, M, N, K);
err = vl_ikm_train(ikmf, data, N);
if (err)
printf("ikmeans: possible overflow!");
/* ------------------------------------------------------------------
* Return results
* --------------------------------------------------------------- */
// allocate PyArrayObject for centers (column-majored)
npy_intp dims[2];
dims[0] = M;
dims[1] = K;
PyArrayObject * centers = (PyArrayObject*) PyArray_NewFromDescr(
&PyArray_Type, PyArray_DescrFromType(PyArray_INT32),
2, dims, NULL, NULL, NPY_F_CONTIGUOUS, NULL);
// copy data
int * centers_data = (int*) centers->data;
memcpy(centers_data, vl_ikm_get_centers(ikmf), sizeof(vl_ikm_acc) * M * K);
// allocate PyArrayObject for cluster assignment array
PyArrayObject * asgn = (PyArrayObject*) PyArray_SimpleNew(
1, (npy_intp*) &N, PyArray_UINT32);
// copy data
unsigned int * asgn_data = (unsigned int*) asgn->data;
int j;
vl_ikm_push(ikmf, (vl_uint*) asgn_data, data, N);
// clean
vl_ikm_delete(ikmf);
if (verb) {
printf("ikmeans: done\n");
}
// construct tuple to return both results: (regions, frames)
PyObject * tuple = PyTuple_New(2);
PyTuple_SetItem(tuple, 0, PyArray_Return(centers));
PyTuple_SetItem(tuple, 1, PyArray_Return(asgn));
return tuple;
}
