void scanFile(FILE *fp, Args *args){
char *tag;
int numRead, *lengths;
Profile *profiles;
int n;
tag = (char *)emalloc(3*sizeof(char));
numRead = fread(tag,sizeof(char),3,fp);
assert(numRead == 3);
while(!feof(fp)){
if(strcmp(tag,"sum")==0){
numRead = fread(&n,sizeof(int),1,fp);
assert(numRead == 1);
profiles = (Profile *)emalloc(n*sizeof(Profile));
numRead = fread(profiles,sizeof(Profile),n,fp);
assert(numRead == n);
writeProfiles(profiles, n);
free(profiles);
}else if(strcmp(tag,"con")==0){
numRead = fread(&n,sizeof(int),1,fp);
assert(numRead == 1);
lengths = (int *)emalloc(n*sizeof(int));
numRead = fread(lengths,sizeof(int),n,fp);
assert(numRead == n);
writeLengths(lengths, n);
free(lengths);
}else if(strcmp(tag,"pos")==0){
writePositions(fp);
}else if(strcmp(tag,"lik")==0){
writeLikelihoods(fp);
}else
assert(0);
numRead = fread(tag,sizeof(char),3,fp);
}
free(tag);
}
void CompilationConfigWriter::writeConfig() {
EL::MapType map;
map["version"] = EL::Value(1.0);
map["profiles"] = writeProfiles(m_config);
m_stream << EL::Value(map) << "\n";
}