/******************************************************************************
METHOD: l8cfmask
PURPOSE: the main routine for fmask in C
RETURN VALUE:
Type = int
Value Description
----- -----------
ERROR An error occurred during processing of the l8cfmask
SUCCESS Processing was successful
PROJECT: Land Satellites Data System Science Research and Development (LSRD)
at the USGS EROS
HISTORY:
Date Programmer Reason
-------- --------------- -------------------------------------
3/15/2013 Song Guo Original Development
5/14/2013 Song Guo Added in Polar Stereographic support
7/17/2013 Song Guo Added in Map info
8/15/2013 Song Guo Modified to use TOA reflectance file
as input instead of metadata file
Oct/2014 Ron Dilley Modified to utilize the ESPA internal raw binary
file format
NOTES: type ./l8cfmask --help for information to run the code
******************************************************************************/
int
main (int argc, char *argv[])
{
char errstr[MAX_STR_LEN]; /* error string */
char *cptr = NULL; /* pointer to the file extension */
char *xml_name = NULL; /* input XML filename */
char directory[MAX_STR_LEN]; /* input/output data directory */
char extension[MAX_STR_LEN]; /* input TOA file extension */
int ib; /* band counters */
Input_t *input = NULL; /* input data and meta data */
char envi_file[MAX_STR_LEN]; /* output ENVI file name */
char scene_name[MAX_STR_LEN]; /* input data scene name */
unsigned char **pixel_mask; /* pixel mask */
unsigned char **conf_mask; /* confidence mask */
int status; /* return value from function call */
float clear_ptm; /* percent of clear-sky pixels */
float t_templ = 0.0; /* percentile of low background temperature */
float t_temph = 0.0; /* percentile of high background temperature */
Output_t *output = NULL; /* output structure and metadata */
bool verbose; /* verbose flag for printing messages */
bool use_l8_cirrus; /* should we use L8 cirrus cloud bit results? */
int cldpix = 2; /* Default buffer for cloud pixel dilate */
int sdpix = 2; /* Default buffer for shadow pixel dilate */
float cloud_prob; /* Default cloud probability */
float sun_azi_temp = 0.0; /* Keep the original sun azimuth angle */
int max_cloud_pixels; /* Maximum cloud pixel number in cloud division */
Espa_internal_meta_t xml_metadata; /* XML metadata structure */
Envi_header_t envi_hdr; /* output ENVI header information */
time_t now;
time (&now);
printf ("CFmask start_time=%s\n", ctime (&now));
/* Read the command-line arguments, including the name of the input
Landsat TOA reflectance product and the DEM */
status = get_args (argc, argv, &xml_name, &cloud_prob, &cldpix,
&sdpix, &max_cloud_pixels, &use_l8_cirrus, &verbose);
if (status != SUCCESS)
{
sprintf (errstr, "calling get_args");
CFMASK_ERROR (errstr, "main");
}
/* Validate the input metadata file */
if (validate_xml_file (xml_name) != SUCCESS)
{ /* Error messages already written */
CFMASK_ERROR (errstr, "main");
}
/* Initialize the metadata structure */
init_metadata_struct (&xml_metadata);
/* Parse the metadata file into our internal metadata structure; also
allocates space as needed for various pointers in the global and band
metadata */
if (parse_metadata (xml_name, &xml_metadata) != SUCCESS)
{ /* Error messages already written */
CFMASK_ERROR (errstr, "main");
}
/* Verify supported satellites */
if (strcmp (xml_metadata.global.satellite, "LANDSAT_8") != 0)
{
sprintf (errstr, "Unsupported satellite sensor");
CFMASK_ERROR (errstr, "main");
}
/* Split the filename to obtain the directory, scene name, and extension */
split_filename (xml_name, directory, scene_name, extension);
if (verbose)
printf ("directory, scene_name, extension=%s,%s,%s\n",
directory, scene_name, extension);
/* Open input file, read metadata, and set up buffers */
input = OpenInput (&xml_metadata);
if (input == NULL)
{
sprintf (errstr, "opening the TOA and brightness temp files in: %s",
xml_name);
CFMASK_ERROR (errstr, "main");
}
if (verbose)
{
/* Print some info to show how the input metadata works */
printf ("DEBUG: Number of input TOA bands: %d\n", input->nband);
printf ("DEBUG: Number of input thermal bands: %d\n", 1);
printf ("DEBUG: Number of input TOA lines: %d\n", input->size.l);
printf ("DEBUG: Number of input TOA samples: %d\n", input->size.s);
printf ("DEBUG: ACQUISITION_DATE.DOY is %d\n",
input->meta.acq_date.doy);
printf ("DEBUG: Fill value is %d\n", input->meta.fill);
for (ib = 0; ib < input->nband; ib++)
{
printf ("DEBUG: Band %d-->\n", ib);
printf ("DEBUG: band satu_value_ref: %d\n",
input->meta.satu_value_ref[ib]);
printf ("DEBUG: band satu_value_max: %d\n",
input->meta.satu_value_max[ib]);
printf ("DEBUG: band gains: %f, band biases: %f\n",
input->meta.gain[ib], input->meta.bias[ib]);
}
printf ("DEBUG: Thermal Band (Band 10) -->\n");
printf ("DEBUG: therm_satu_value_ref: %d\n",
input->meta.therm_satu_value_ref);
printf ("DEBUG: therm_satu_value_max: %d\n",
input->meta.therm_satu_value_max);
printf ("DEBUG: therm_gain: %f, therm_bias: %f\n",
input->meta.gain_th, input->meta.bias_th);
printf ("DEBUG: SUN AZIMUTH is %f\n", input->meta.sun_az);
printf ("DEBUG: SUN ZENITH is %f\n", input->meta.sun_zen);
}
/* If the scene is an ascending polar scene (flipped upside down), then
the solar azimuth needs to be adjusted by 180 degrees. The scene in
this case would be north down and the solar azimuth is based on north
being up clock-wise direction. Flip the south to be up will not change
the actual sun location, with the below relations, the solar azimuth
angle will need add in 180.0 for correct sun location */
if (input->meta.ul_corner.is_fill &&
input->meta.lr_corner.is_fill &&
(input->meta.ul_corner.lat - input->meta.lr_corner.lat) < MINSIGMA)
{
/* Keep the original solar azimuth angle */
sun_azi_temp = input->meta.sun_az;
input->meta.sun_az += 180.0;
if ((input->meta.sun_az - 360.0) > MINSIGMA)
input->meta.sun_az -= 360.0;
if (verbose)
printf (" Polar or ascending scene."
" Readjusting solar azimuth by 180 degrees.\n"
" New value: %f degrees\n", input->meta.sun_az);
}
/* Dynamic allocate the 2d mask memory */
pixel_mask = (unsigned char **) allocate_2d_array (input->size.l,
input->size.s,
sizeof (unsigned char));
if (pixel_mask == NULL)
{
sprintf (errstr, "Allocating pixel mask memory");
CFMASK_ERROR (errstr, "main");
}
conf_mask = (unsigned char **) allocate_2d_array (input->size.l,
input->size.s,
sizeof (unsigned char));
if (conf_mask == NULL)
{
sprintf (errstr, "Allocating confidence mask memory");
CFMASK_ERROR (errstr, "main");
}
/* Initialize the mask to clear data */
int row, col;
for (row = 0; row < input->size.l; row++)
for (col = 0; col < input->size.s; col++)
{
pixel_mask[row][col] = MASK_CLEAR_LAND;
conf_mask[row][col] = CLOUD_CONFIDENCE_NONE;
}
/* Build the potential cloud, shadow, snow, water mask */
status = potential_cloud_shadow_snow_mask (input, cloud_prob, &clear_ptm,
&t_templ, &t_temph, pixel_mask,
conf_mask, use_l8_cirrus,
verbose);
if (status != SUCCESS)
{
sprintf (errstr, "processing potential_cloud_shadow_snow_mask");
CFMASK_ERROR (errstr, "main");
}
printf ("Pcloud done, starting cloud/shadow match\n");
/* Build the final cloud shadow based on geometry matching and
combine the final cloud, shadow, snow, water masks into fmask
the pixel_mask is a bit mask as input and a value mask as output */
status = object_cloud_shadow_match (input, clear_ptm, t_templ, t_temph,
cldpix, sdpix, max_cloud_pixels,
pixel_mask, verbose);
if (status != SUCCESS)
{
sprintf (errstr, "processing object_cloud_and_shadow_match");
CFMASK_ERROR (errstr, "main");
}
/* Reassign solar azimuth angle for output purpose if south up north
down scene is involved */
if (input->meta.ul_corner.is_fill &&
input->meta.lr_corner.is_fill &&
(input->meta.ul_corner.lat - input->meta.lr_corner.lat) < MINSIGMA)
input->meta.sun_az = sun_azi_temp;
/* Open the output file */
output = OpenOutput (&xml_metadata, input);
if (output == NULL)
{ /* error message already printed */
sprintf (errstr, "Opening output file");
CFMASK_ERROR (errstr, "main");
}
if (!PutOutput (output, pixel_mask))
{
sprintf (errstr, "Writing output fmask files\n");
CFMASK_ERROR (errstr, "main");
}
/* Close the output file */
if (!CloseOutput (output))
{
sprintf (errstr, "closing output file");
CFMASK_ERROR (errstr, "main");
}
/* Create the ENVI header file this band */
if (create_envi_struct (&output->metadata.band[0], &xml_metadata.global,
&envi_hdr) != SUCCESS)
{
sprintf (errstr, "Creating ENVI header structure.");
CFMASK_ERROR (errstr, "main");
}
/* Write the ENVI header */
strcpy (envi_file, output->metadata.band[0].file_name);
cptr = strchr (envi_file, '.');
if (cptr == NULL)
{
sprintf (errstr, "error in ENVI header filename");
CFMASK_ERROR (errstr, "main");
}
strcpy (cptr, ".hdr");
if (write_envi_hdr (envi_file, &envi_hdr) != SUCCESS)
{
sprintf (errstr, "Writing ENVI header file.");
CFMASK_ERROR (errstr, "main");
}
/* Append the cfmask band to the XML file */
if (append_metadata (output->nband, output->metadata.band, xml_name)
!= SUCCESS)
{
sprintf (errstr, "Appending spectral index bands to XML file.");
CFMASK_ERROR (errstr, "main");
}
/* Free the structure */
if (!FreeOutput (output))
{
sprintf (errstr, "freeing output file structure");
CFMASK_ERROR (errstr, "main");
}
output = OpenOutputConfidence (&xml_metadata, input);
if (output == NULL)
{ /* error message already printed */
sprintf (errstr, "Opening output file");
CFMASK_ERROR (errstr, "main");
}
if (!PutOutput (output, conf_mask))
{
sprintf (errstr, "Writing output fmask files\n");
CFMASK_ERROR (errstr, "main");
}
/* Close the output file */
if (!CloseOutput (output))
{
sprintf (errstr, "closing output file");
CFMASK_ERROR (errstr, "main");
}
/* Create the ENVI header file this band */
if (create_envi_struct (&output->metadata.band[0], &xml_metadata.global,
&envi_hdr) != SUCCESS)
{
sprintf (errstr, "Creating ENVI header structure.");
CFMASK_ERROR (errstr, "main");
}
/* Write the ENVI header */
strcpy (envi_file, output->metadata.band[0].file_name);
cptr = strchr (envi_file, '.');
if (cptr == NULL)
{
sprintf (errstr, "error in ENVI header filename");
CFMASK_ERROR (errstr, "main");
}
strcpy (cptr, ".hdr");
if (write_envi_hdr (envi_file, &envi_hdr) != SUCCESS)
{
sprintf (errstr, "Writing ENVI header file.");
CFMASK_ERROR (errstr, "main");
}
/* Append the cfmask band to the XML file */
if (append_metadata (output->nband, output->metadata.band, xml_name)
!= SUCCESS)
{
sprintf (errstr, "Appending spectral index bands to XML file.");
CFMASK_ERROR (errstr, "main");
}
/* Free the structure */
if (!FreeOutput (output))
{
sprintf (errstr, "freeing output file structure");
CFMASK_ERROR (errstr, "main");
}
/* Free the metadata structure */
free_metadata (&xml_metadata);
/* Free the pixel mask */
status = free_2d_array ((void **) pixel_mask);
if (status != SUCCESS)
{
sprintf (errstr, "Freeing pixel mask memory");
CFMASK_ERROR (errstr, "main");
}
status = free_2d_array ((void **) conf_mask);
if (status != SUCCESS)
{
sprintf (errstr, "Freeing confidence mask memory");
CFMASK_ERROR (errstr, "main");
}
/* Close the input file and free the structure */
CloseInput (input);
FreeInput (input);
free (xml_name);
printf ("Processing complete.\n");
time (&now);
printf ("CFmask end_time=%s\n", ctime (&now));
return SUCCESS;
}
/******************************************************************************
METHOD: cfmask
PURPOSE: the main routine for fmask in C
RETURN VALUE:
Type = int
Value Description
----- -----------
ERROR An error occurred during processing of the cfmask
SUCCESS Processing was successful
PROJECT: Land Satellites Data System Science Research and Development (LSRD)
at the USGS EROS
HISTORY:
Date Programmer Reason
-------- --------------- -------------------------------------
3/15/2013 Song Guo Original Development
5/14/2013 Song Guo Added in Polar Stereographic support
7/17/2013 Song Guo Added in Map info
8/15/2013 Song Guo Modified to use TOA reflectance file
as input instead of metadata file
NOTES: type ./cfmask --help for information to run the code
******************************************************************************/
int main (int argc, char *argv[])
{
char errstr[MAX_STR_LEN]; /* error string */
char lndth_name[MAX_STR_LEN]; /* ledaps Brightness Temperature file */
char fmask_name[MAX_STR_LEN]; /* output fmask binary file name */
char fmask_header[MAX_STR_LEN]; /* output fmask binary file header */
char fmask_hdf_name[MAX_STR_LEN]; /* output fmask HDF file name */
char fmask_hdf_hdr[MAX_STR_LEN]; /* output fmask HDF file header */
char *lndcal_name = NULL; /* input lndcal data filename */
char directory[MAX_STR_LEN]; /* input/output data directory */
char extension[MAX_STR_LEN]; /* input TOA file extension */
int ib; /* band counters */
char sds_names[NBAND_REFL_MAX][MAX_STR_LEN]; /* array of image SDS names */
Input_t *input = NULL; /* input data and meta data */
char scene_name[MAX_STR_LEN]; /* input data scene name */
char *hdf_grid_name = "Grid"; /* name of the grid for HDF-EOS */
unsigned char **cloud_mask; /* cloud pixel mask */
unsigned char **shadow_mask; /* shadow pixel mask */
unsigned char **snow_mask; /* snow pixel mask */
unsigned char **water_mask; /* water pixel mask */
int status; /* return value from function call */
FILE *fd = NULL; /* file pointer */
float ptm; /* percent of clear-sky pixels */
float t_templ = 0.0; /* percentile of low background temperature */
float t_temph = 0.0; /* percentile of high background temperature */
int out_sds_types[NUM_OUT_SDS]; /* array of image SDS types */
char *sds_name="fmask_band"; /* Fmask hdf SDS name */
Output_t *output = NULL; /* output structure and metadata */
bool verbose; /* verbose flag for printing messages */
bool write_binary; /* should we write raw binary output? */
bool no_hdf_output; /* should we don't write HDF4 output file? */
int cldpix = 2; /* Default buffer for cloud pixel dilate */
int sdpix = 2; /* Default buffer for shadow pixel dilate */
float cloud_prob; /* Default cloud probability */
Space_def_t space_def; /* spatial definition information */
float sun_azi_temp = 0.0;/* Keep the original sun azimuth angle */
time_t now;
time(&now);
printf("CFmask start_time=%s\n",ctime(&now));
/* Read the command-line arguments, including the name of the input
Landsat TOA reflectance product and the DEM */
status = get_args (argc, argv, &lndcal_name, &cloud_prob, &cldpix,
&sdpix, &write_binary, &no_hdf_output, &verbose);
if (status != SUCCESS)
{
sprintf (errstr, "calling get_args");
ERROR (errstr, "main");
}
split_filename(lndcal_name, directory, scene_name, extension);
if (verbose)
printf("directory, scene_name, extension=%s,%s,%s\n",
directory, scene_name, extension);
sprintf(lndcal_name, "%slndcal.%s.hdf", directory, scene_name);
sprintf(lndth_name, "%slndth.%s.hdf", directory, scene_name);
sprintf(fmask_name, "%sfmask.%s.img", directory, scene_name);
sprintf(fmask_header, "%sfmask.%s.img.hdr", directory, scene_name);
sprintf(fmask_hdf_name, "%sfmask.%s.hdf", directory, scene_name);
if (verbose)
{
printf("lndcal_name, lndth_name = %s, %s\n", lndcal_name, lndth_name);
printf("fmask_name, fmask_header, fmask_hdf_name = %s, %s, %s\n",
fmask_name, fmask_header, fmask_hdf_name);
}
/* Open input file, read metadata, and set up buffers */
input = OpenInput(lndth_name, lndcal_name);
if (input == NULL)
{
sprintf (errstr, "opening the input files: %s & %s", lndth_name,
lndcal_name);
ERROR (errstr, "main");
}
/* Get the projection and spatial information from the input TOA
reflectance product */
status = get_space_def_hdf(&space_def, lndcal_name, hdf_grid_name);
if (status != SUCCESS)
{
sprintf(errstr, "Reading spatial metadata from the HDF file: %s",
lndcal_name);
ERROR (errstr, "main");
}
input->meta.zone = space_def.zone;
if (verbose)
{
/* Print some info to show how the input metadata works */
printf ("DEBUG: Number of input TOA bands: %d\n", input->nband);
printf ("DEBUG: Number of input thermal bands: %d\n", 1);
printf ("DEBUG: Number of input lines: %d\n", input->size.l);
printf ("DEBUG: Number of input samples: %d\n", input->size.s);
printf ("DEBUG: Number of input TOA lines: %d\n", input->toa_size.l);
printf ("DEBUG: Number of input TOA samples: %d\n", input->toa_size.s);
printf ("DEBUG: Provider is %s\n", input->meta.provider);
printf ("DEBUG: Satellite is %s\n", input->meta.sat);
printf ("DEBUG: Instrument is %s\n", input->meta.inst);
printf ("DEBUG: ACQUISITION_DATE.DOY is %d\n", input->meta.acq_date.doy);
printf ("DEBUG: WRS system is %s\n", input->meta.wrs_sys);
printf ("DEBUG: Path is %d\n", input->meta.path);
printf ("DEBUG: Row is %d\n", input->meta.row);
printf ("DEBUG: Fill value is %d\n", input->meta.fill);
for (ib = 0; ib < input->nband; ib++)
{
printf ("DEBUG: Band %d-->\n", ib);
printf ("DEBUG: SDS name is %s\n", input->sds[ib].name);
printf ("DEBUG: SDS rank: %d\n", input->sds[ib].rank);
printf ("DEBUG: band satu_value_ref: %d\n",
input->meta.satu_value_ref[ib]);
printf ("DEBUG: band satu_value_max: %d\n",
input->meta.satu_value_max[ib]);
printf ("DEBUG: band gains: %f, band biases: %f\n",
input->meta.gain[ib], input->meta.bias[ib]);
}
printf ("DEBUG: Thermal Band -->\n");
printf ("DEBUG: SDS name is %s\n", input->therm_sds.name);
printf ("DEBUG: SDS rank: %d\n", input->therm_sds.rank);
printf ("DEBUG: therm_satu_value_ref: %d\n",
input->meta.therm_satu_value_ref);
printf ("DEBUG: therm_satu_value_max: %d\n",
input->meta.therm_satu_value_max);
printf ("DEBUG: therm_gain: %f, therm_bias: %f\n",
input->meta.gain_th, input->meta.bias_th);
printf("DEBUG: ROW is %d\n", input->meta.row);
printf("DEBUG: PATH is %d\n", input->meta.path);
printf("DEBUG: SUN AZIMUTH is %f\n", input->meta.sun_az);
printf("DEBUG: SUN ZENITH is %f\n", input->meta.sun_zen);
printf("DEBUG: Projection Zone is %d\n", input->meta.zone);
printf("DEBUG: unit_ref is %s\n", input->meta.unit_ref);
printf("DEBUG: valid_range_ref is %f & %f\n",
input->meta.valid_range_ref[0],
input->meta.valid_range_ref[1]);
}
/* If the scene is an ascending polar scene (flipped upside down), then
the solar azimuth needs to be adjusted by 180 degrees. The scene in
this case would be north down and the solar azimuth is based on north
being up clock-wise direction. Flip the south to be up will not change
the actual sun location, with the below relations, the solar azimuth
angle will need add in 180.0 for correct sun location */
if (input->meta.ul_corner.is_fill &&
input->meta.lr_corner.is_fill &&
(input->meta.ul_corner.lat - input->meta.lr_corner.lat) < MINSIGMA)
{
/* Keep the original solar azimuth angle */
sun_azi_temp = input->meta.sun_az;
input->meta.sun_az += 180.0;
if ((input->meta.sun_az - 360.0) > MINSIGMA)
input->meta.sun_az -= 360.0;
if (verbose)
printf (" Polar or ascending scene. Readjusting solar azimuth by "
"180 degrees.\n New value: %f degrees\n", input->meta.sun_az);
}
/* Copy the SDS names and QA SDS names from the input structure for the
output structure, since we are simply duplicating the input */
for (ib = 0; ib < input->nband; ib++)
strcpy (&sds_names[ib][0], input->sds[ib].name);
/* Dynamic allocate the 2d mask memory */
cloud_mask = (unsigned char **)allocate_2d_array(input->size.l,
input->size.s, sizeof(unsigned char));
shadow_mask = (unsigned char **)allocate_2d_array(input->size.l,
input->size.s, sizeof(unsigned char));
snow_mask = (unsigned char **)allocate_2d_array(input->size.l,
input->size.s, sizeof(unsigned char));
water_mask = (unsigned char **)allocate_2d_array(input->size.l,
input->size.s, sizeof(unsigned char));
if (cloud_mask == NULL || shadow_mask == NULL || snow_mask == NULL
|| water_mask == NULL)
{
sprintf (errstr, "Allocating mask memory");
ERROR (errstr, "main");
}
/* Build the potential cloud, shadow, snow, water mask */
status = potential_cloud_shadow_snow_mask(input, cloud_prob, &ptm,
&t_templ, &t_temph, cloud_mask, shadow_mask, snow_mask,
water_mask, verbose);
if (status != SUCCESS)
{
sprintf (errstr, "processing potential_cloud_shadow_snow_mask");
ERROR (errstr, "main");
}
printf("Pcloud done, starting cloud/shadow match\n");
/* Build the final cloud shadow based on geometry matching and
combine the final cloud, shadow, snow, water masks into fmask */
status = object_cloud_shadow_match(input, ptm, t_templ, t_temph,
cldpix, sdpix, cloud_mask, shadow_mask, snow_mask, water_mask,
verbose);
if (status != SUCCESS)
{
sprintf (errstr, "processing object_cloud_and_shadow_match");
ERROR (errstr, "main");
}
status = free_2d_array((void **)shadow_mask);
if (status != SUCCESS)
{
sprintf (errstr, "Freeing mask memory");
ERROR (errstr, "main");
}
status = free_2d_array((void **)snow_mask);
if (status != SUCCESS)
{
sprintf (errstr, "Freeing mask memory");
ERROR (errstr, "main");
}
status = free_2d_array((void **)water_mask);
if (status != SUCCESS)
{
sprintf (errstr, "Freeing mask memory");
ERROR (errstr, "main");
}
/* Reassign solar azimuth angle for output purpose if south up north
down scene is involved */
if (input->meta.ul_corner.is_fill &&
input->meta.lr_corner.is_fill &&
(input->meta.ul_corner.lat - input->meta.lr_corner.lat) < MINSIGMA)
input->meta.sun_az = sun_azi_temp;
if (write_binary)
{
/* Create an ENVI header file for the binary fmask */
status = write_envi_hdr(fmask_header, BINARY_FILE, input, &space_def);
if (status != SUCCESS)
{
sprintf(errstr, "Creating ENVI header for binary fmask");
ERROR (errstr, "main");
}
/* Open the mask file for writing */
fd = fopen(fmask_name, "w");
if (fd == NULL)
{
sprintf(errstr, "Opening report file: %s", fmask_name);
ERROR (errstr, "main");
}
/* Write out the mask file */
status = fwrite(&cloud_mask[0][0], sizeof(unsigned char),
input->size.l * input->size.s, fd);
if (status != input->size.l * input->size.s)
{
sprintf(errstr, "Writing to %s", fmask_name);
ERROR (errstr, "main");
}
/* Close the mask file */
status = fclose(fd);
if (status)
{
sprintf(errstr, "Closing file %s", fmask_name);
ERROR (errstr, "main");
}
}
if (!no_hdf_output)
{
/* Create and open fmask HDF output file */
if (!CreateOutput(fmask_hdf_name))
{
sprintf(errstr, "Creating HDF fmask output file");
ERROR (errstr, "main");
}
output = OpenOutput (fmask_hdf_name, sds_name, &input->size);
if (output == NULL)
{
sprintf (errstr, "opening output file - %s", fmask_hdf_name);
ERROR(errstr, "main");
}
if (!PutOutput(output, cloud_mask))
{
sprintf (errstr, "Writing output fmask in HDF files\n");
ERROR (errstr, "main");
}
if (!PutMetadata(output, input))
{
sprintf (errstr, "Writing output fmask metadata in HDF files\n");
ERROR (errstr, "main");
}
/* Close the output file and free the structure */
if (!CloseOutput (output))
{
sprintf (errstr, "closing output file - %s", fmask_hdf_name);
ERROR(errstr, "main");
}
if (!FreeOutput (output))
{
sprintf (errstr, "freeing output file - %s", fmask_hdf_name);
ERROR(errstr, "main");
}
/* Write the spatial information, after the file has been closed */
out_sds_types[0] = DFNT_UINT8;
status = put_space_def_hdf (&space_def, fmask_hdf_name, NUM_OUT_SDS,
out_sds_names, out_sds_types, hdf_grid_name);
if (status != SUCCESS)
{
sprintf("Putting spatial metadata to the HDF file: "
"%s", lndcal_name);
ERROR (errstr, "main");
}
/* Write CFmask HDF header to add in envi map info */
sprintf (fmask_hdf_hdr, "%s.hdr", fmask_hdf_name);
status = write_envi_hdr (fmask_hdf_hdr, HDF_FILE, input, &space_def);
if (status != SUCCESS)
{
sprintf(errstr, "Error writing the ENVI header for CFmask HDF hdr");
ERROR (errstr, "main");
}
}
/* Free the final output cloud_mask */
status = free_2d_array((void **)cloud_mask);
if (status != SUCCESS)
{
sprintf (errstr, "Freeing mask memory");
ERROR (errstr, "main");
}
/* Close the input file and free the structure */
CloseInput (input);
FreeInput (input);
free(lndcal_name);
printf ("Processing complete.\n");
time(&now);
printf("CFmask end_time=%s\n",ctime(&now));
return (SUCCESS);
}
/******************************************************************************
MODULE: convert_espa_to_raw_binary_bip
PURPOSE: Converts the internal ESPA raw binary file to a raw binary band
interleave by pixel format.
RETURN VALUE:
Type = int
Value Description
----- -----------
ERROR Error converting to BIP
SUCCESS Successfully converted to BIP
NOTES:
1. The bands in the XML file will be written, in order, to the BIP file.
These bands must be of the same datatype and same size, otherwise this
function will exit with an error.
2. If the data types are not the same, the convert_qa flag will allow the
user to specify that the QA bands (uint8) should be included in the output
BIP product however the QA bands will be converted to the same data type
as the first band in the XML file.
******************************************************************************/
int convert_espa_to_raw_binary_bip
(
char *espa_xml_file, /* I: input ESPA XML metadata filename */
char *bip_file, /* I: output BIP filename */
bool convert_qa, /* I: should the QA bands (uint8) be converted to
the data type of band 1 (if QA bands are of
a different data type)? */
bool del_src /* I: should the source files be removed after
conversion? */
)
{
char FUNC_NAME[] = "convert_espa_to_raw_binary_bip"; /* function name */
char errmsg[STR_SIZE]; /* error message */
char hdr_file[STR_SIZE]; /* name of the header file for this band */
char xml_file[STR_SIZE]; /* new XML file for the BIP product */
char envi_file[STR_SIZE]; /* name of the output ENVI header file */
char *cptr = NULL; /* pointer to empty space in the band name */
int i; /* looping variable for each band */
int l; /* looping variable for each line */
int s; /* looping variable for each sample */
int nbytes; /* number of bytes per pixel in the data type */
int nbytes_line; /* number of bytes per line in the data type */
int count; /* number of chars copied in snprintf */
int curr_pix; /* index for current pixel for QA conversion */
int curr_ipix; /* index for current input pixel */
int curr_opix; /* index for current output pixel */
int number_elements; /* number of elements per line for all bands */
void *file_buf = NULL; /* pointer to correct input file buffer */
uint8 *tmp_buf_u8 = NULL; /* buffer for uint8 QA data to be read */
uint8 *file_buf_u8 = NULL; /* buffer for uint8 data to be read */
int16 *file_buf_i16 = NULL; /* buffer for int16 data to be read */
int16 *file_buf_u16 = NULL; /* buffer for uint16 data to be read */
void *ofile_buf = NULL; /* pointer to correct output file buffer */
uint8 *ofile_buf_u8 = NULL; /* buffer for output uint8 data to be written */
int16 *ofile_buf_i16 = NULL;/* buffer for output int16 data to be written */
int16 *ofile_buf_u16 = NULL;/* buffer for output uint16 data to be
written */
FILE **fp_rb = NULL; /* array of file pointers for the input raw
binary files */
FILE *fp_bip = NULL; /* file pointer for the BIP raw binary file */
Espa_internal_meta_t xml_metadata; /* XML metadata structure to be
populated by reading the input XML metadata
file */
Espa_band_meta_t *bmeta=NULL; /* pointer to the array of bands metadata */
Espa_global_meta_t *gmeta=NULL; /* pointer to the global metadata
structure */
Envi_header_t envi_hdr; /* output ENVI header information */
/* Validate the input metadata file */
if (validate_xml_file (espa_xml_file) != SUCCESS)
{ /* Error messages already written */
return (ERROR);
}
/* Initialize the metadata structure */
init_metadata_struct (&xml_metadata);
/* Parse the metadata file into our internal metadata structure; also
allocates space as needed for various pointers in the global and band
metadata */
if (parse_metadata (espa_xml_file, &xml_metadata) != SUCCESS)
{ /* Error messages already written */
return (ERROR);
}
bmeta = xml_metadata.band;
gmeta = &xml_metadata.global;
printf ("convert_espa_to_raw_binary_bip processing %d bands ...\n",
xml_metadata.nbands);
/* Allocate file pointers for each band */
fp_rb = calloc (xml_metadata.nbands, sizeof (FILE *));
if (fp_rb == NULL)
{
sprintf (errmsg, "Allocating file pointers for all %d bands.",
xml_metadata.nbands);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
/* Loop through the bands in the XML file and verify they are all of the
same data type and the same size */
for (i = 1; i < xml_metadata.nbands; i++)
{
if (bmeta[i].data_type != bmeta[0].data_type)
{
/* Convert uint8 data types that are flagged as QA */
if (convert_qa && bmeta[i].data_type == ESPA_UINT8 &&
!strcmp (bmeta[i].category, "qa"))
{
/* all is good, data type will be converted */
printf ("Band %s will be converted to native data type.\n",
bmeta[i].name);
}
else
{
sprintf (errmsg, "Data type for band %d (%s) in the XML file "
"does not match that of the first band. All bands must "
"have the same data type to be written to BIP raw binary. "
"Otherwise convert_qa can be specified to convert the QA "
"bands (UINT8).", i+1, bmeta[i].name);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
}
else if (bmeta[i].nlines != bmeta[0].nlines)
{
sprintf (errmsg, "Number of lines for band %d (%s) in the XML file "
"does not match that of the first band. All bands must be of "
"the same image size to be written to BIP raw binary.", i+1,
bmeta[i].name);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
else if (bmeta[i].nsamps != bmeta[0].nsamps)
{
sprintf (errmsg, "Number of samples for band %d (%s) in the XML "
"file does not match that of the first band. All bands must "
"be of the same image size to be written to BIP raw binary.",
i+1, bmeta[i].name);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
}
/* Loop through the bands in the XML file and open each band file for
reading */
for (i = 0; i < xml_metadata.nbands; i++)
{
/* Open the file for this band of data to allow for reading */
fp_rb[i] = open_raw_binary (bmeta[i].file_name, "rb");
if (fp_rb[i] == NULL)
{
sprintf (errmsg, "Opening the input raw binary file: %s",
bmeta[i].file_name);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
}
/* Open the output BIP file to allow for writing */
fp_bip = open_raw_binary (bip_file, "wb");
if (fp_bip == NULL)
{
sprintf (errmsg, "Opening the output raw binary BIP file: %s",
bip_file);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
/* Allocate memory for a single line of the image and all the bands, based
on the input data type of the first band */
switch (bmeta[0].data_type)
{
case ESPA_UINT8:
nbytes = sizeof (uint8);
break;
case ESPA_INT16:
nbytes = sizeof (int16);
break;
case ESPA_UINT16:
nbytes = sizeof (uint16);
break;
default:
sprintf (errmsg, "Unsupported data type. Currently only uint8, "
"int16, and uint16 are supported.");
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
/* Input data */
file_buf = calloc (bmeta[0].nsamps * xml_metadata.nbands, nbytes);
if (file_buf == NULL)
{
sprintf (errmsg, "Allocating memory for a line of %d-byte data "
"containing %d samples for all %d bands.", nbytes, bmeta[0].nsamps,
xml_metadata.nbands);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
/* Output data */
ofile_buf = calloc (bmeta[0].nsamps * xml_metadata.nbands, nbytes);
if (ofile_buf == NULL)
{
sprintf (errmsg, "Allocating memory for a line of %d-byte data "
"containing %d samples for all %d bands.", nbytes, bmeta[0].nsamps,
xml_metadata.nbands);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
/* Assign the datatype-specific pointer to the void pointer to be used
in the data conversion later for QA pixels */
switch (bmeta[0].data_type)
{
case ESPA_UINT8:
file_buf_u8 = file_buf;
ofile_buf_u8 = ofile_buf;
break;
case ESPA_INT16:
file_buf_i16 = file_buf;
ofile_buf_i16 = ofile_buf;
break;
case ESPA_UINT16:
file_buf_u16 = file_buf;
ofile_buf_u16 = ofile_buf;
break;
default:
sprintf (errmsg, "Unsupported data type. Currently only uint8, "
"int16, and uint16 are supported.");
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
/* The QA bands will be converted so allocate space for a temporary UINT8
input array */
if (convert_qa)
{
tmp_buf_u8 = calloc (bmeta[0].nsamps, sizeof (uint8));
if (tmp_buf_u8 == NULL)
{
sprintf (errmsg, "Allocating memory for a line of QA data "
"containing %d samples.", bmeta[0].nsamps);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
}
/* Loop through the lines in the input raw binary file. Read each line
for each band, put into the output BIP buffer, and write to the output
file. */
nbytes_line = nbytes * bmeta[0].nsamps;
for (l = 0; l < bmeta[0].nlines; l++)
{
if (l % 100 == 0)
printf ("Line %d\n", l);
for (i = 0; i < xml_metadata.nbands; i++)
{
/* Check to make sure the current band data type is the same as
the output data type, otherwise this is a QA band that will
get converted to the output data type */
if ((bmeta[0].data_type != bmeta[i].data_type) &&
(bmeta[i].data_type == ESPA_UINT8) && convert_qa)
{
/* Read the current line from the raw binary file into the
temporary UINT8 buffer */
if (read_raw_binary (fp_rb[i], 1, bmeta[0].nsamps,
sizeof (uint8), tmp_buf_u8) != SUCCESS)
{
sprintf (errmsg, "Reading QA data from the raw binary "
"file for line %d and band %d", l, i);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
/* Convert the data and write it to the output buffer */
if (bmeta[0].data_type == ESPA_INT16)
{
curr_pix = i * bmeta[0].nsamps;
for (s = 0; s < bmeta[0].nsamps; s++, curr_pix++)
file_buf_i16[curr_pix] = (int16) tmp_buf_u8[s];
}
else if (bmeta[0].data_type == ESPA_UINT16)
{
curr_pix = i * bmeta[0].nsamps;
for (s = 0; s < bmeta[0].nsamps; s++, curr_pix++)
file_buf_u16[curr_pix] = (uint16) tmp_buf_u8[s];
}
}
else
{
/* Read the current line from the raw binary file */
if (read_raw_binary (fp_rb[i], 1, bmeta[0].nsamps, nbytes,
file_buf + (i*nbytes_line)) != SUCCESS)
{
sprintf (errmsg, "Reading image data from the raw binary "
"file for line %d and band %d", l, i);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
}
} /* end for i */
/* Loop through the samples and put each band for each pixel into the
output buffer */
for (s = 0; s < bmeta[0].nsamps; s++)
{
curr_opix = s * xml_metadata.nbands;
for (i = 0; i < xml_metadata.nbands; i++, curr_opix++)
{
curr_ipix = i * bmeta[0].nsamps + s;
if (bmeta[0].data_type == ESPA_UINT8)
{
ofile_buf_u8[curr_opix] = file_buf_u8[curr_ipix];
}
else if (bmeta[0].data_type == ESPA_INT16)
{
ofile_buf_i16[curr_opix] = file_buf_i16[curr_ipix];
}
else if (bmeta[0].data_type == ESPA_UINT16)
{
ofile_buf_u16[curr_opix] = file_buf_u16[curr_ipix];
}
}
}
/* Write the current line of data containing all the bands to the
output file */
number_elements = bmeta[0].nsamps * xml_metadata.nbands;
if (fwrite (ofile_buf, nbytes, number_elements, fp_bip) !=
number_elements)
{
sprintf (errmsg, "Writing data to the BIP raw binary file for "
"line %d", l);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
} /* end for l */
/* Close the raw binary files */
for (i = 0; i < xml_metadata.nbands; i++)
close_raw_binary (fp_rb[i]);
close_raw_binary (fp_bip);
/* Free the memory */
free (tmp_buf_u8);
free (file_buf_u8);
free (file_buf_i16);
free (file_buf_u16);
free (ofile_buf_u8);
free (ofile_buf_i16);
free (ofile_buf_u16);
/* Create the ENVI header file for this BIP product */
if (create_envi_struct (&bmeta[0], gmeta, &envi_hdr) != SUCCESS)
{
sprintf (errmsg, "Creating the ENVI header structure for this file.");
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
/* Update the ENVI header (created by default for a single BSQ band) to
represent that this product is a multi-band, BIP file */
envi_hdr.nbands = xml_metadata.nbands;
count = snprintf (envi_hdr.interleave, sizeof (envi_hdr.interleave), "%s",
"BIP");
if (count < 0 || count >= sizeof (envi_hdr.interleave))
{
sprintf (errmsg, "Overflow of envi_hdr.interleave");
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
for (i = 0; i < xml_metadata.nbands; i++)
{
count = snprintf (envi_hdr.band_names[i],
sizeof (envi_hdr.band_names[i]), "%s", bmeta[i].name);
if (count < 0 || count >= sizeof (envi_hdr.band_names))
{
sprintf (errmsg, "Overflow of envi_hdr.band_names");
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
}
/* Write the ENVI header */
count = snprintf (envi_file, sizeof (envi_file), "%s", bip_file);
if (count < 0 || count >= sizeof (envi_file))
{
sprintf (errmsg, "Overflow of envi_file string");
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
cptr = strchr (envi_file, '.');
if (cptr != NULL)
{
/* File extension found. Replace it with the new extension */
*cptr = '\0';
strcpy (cptr, ".hdr");
}
else
{
/* No file extension found. Just append the new extension */
strcat (envi_file, ".hdr");
}
if (write_envi_hdr (envi_file, &envi_hdr) != SUCCESS)
{
sprintf (errmsg, "Writing the ENVI header file: %s.", envi_file);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
/* Remove the source files if specified */
if (del_src)
{
/* Remove the image and header files for each band */
for (i = 0; i < xml_metadata.nbands; i++)
{
printf (" Removing %s\n", xml_metadata.band[i].file_name);
if (unlink (xml_metadata.band[i].file_name) != 0)
{
sprintf (errmsg, "Deleting source file: %s",
xml_metadata.band[i].file_name);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
/* .hdr file */
count = snprintf (hdr_file, sizeof (hdr_file), "%s",
xml_metadata.band[i].file_name);
if (count < 0 || count >= sizeof (hdr_file))
{
sprintf (errmsg, "Overflow of hdr_file string");
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
cptr = strrchr (hdr_file, '.');
strcpy (cptr, ".hdr");
printf (" Removing %s\n", hdr_file);
if (unlink (hdr_file) != 0)
{
sprintf (errmsg, "Deleting source file: %s", hdr_file);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
}
/* Remove the source XML */
printf (" Removing %s\n", espa_xml_file);
if (unlink (espa_xml_file) != 0)
{
sprintf (errmsg, "Deleting source file: %s", espa_xml_file);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
}
/* Use the input XML file structure for the output XML file since it's the
same except for the band filenames. Loop through the bands in the XML
file and change the filenames to be the single output BIP filename. */
for (i = 0; i < xml_metadata.nbands; i++)
{
count = snprintf (bmeta[i].file_name, sizeof (bmeta[i].file_name), "%s",
bip_file);
if (count < 0 || count >= sizeof (bmeta[i].file_name))
{
sprintf (errmsg, "Overflow of bmeta.file_name string");
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
}
/* Create the XML file for the BIP product */
count = snprintf (xml_file, sizeof (xml_file), "%s", bip_file);
if (count < 0 || count >= sizeof (xml_file))
{
sprintf (errmsg, "Overflow of xml_file string");
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
cptr = strrchr (xml_file, '.');
if (cptr != NULL)
{
/* File extension found. Replace it with the new extension */
*cptr = '\0';
strcpy (cptr, "_bip.xml");
}
else
{
/* No file extension found. Just append the new extension */
strcat (xml_file, "_bip.xml");
}
/* Write the new XML file */
if (write_metadata (&xml_metadata, xml_file) != SUCCESS)
{
sprintf (errmsg, "Error writing updated XML for the GeoTIFF product: "
"%s", xml_file);
error_handler (true, FUNC_NAME, errmsg);
return (ERROR);
}
/* Free the metadata structure */
free_metadata (&xml_metadata);
/* Successful conversion */
return (SUCCESS);
}
int main (int argc, const char **argv) {
Param_t *param = NULL;
Input_t *input = NULL;
Lut_t *lut = NULL;
Output_t *output = NULL;
Output_t *output_th = NULL;
int iline, isamp,oline, ib, jb, iz, val;
unsigned char *line_in = NULL;
unsigned char *line_in_thz = NULL;
unsigned char *line_out_qa = NULL;
int16 *line_out = NULL;
int16 *line_out_th = NULL;
int16 *line_out_thz = NULL;
Cal_stats_t cal_stats;
Cal_stats6_t cal_stats6;
int nps,nls, nps6, nls6;
int zoomx, zoomy;
int i,odometer_flag=0;
char msgbuf[1024];
char envi_file[STR_SIZE]; /* name of the output ENVI header file */
char *cptr=NULL; /* pointer to the file extension */
size_t input_psize;
int qa_band = QA_BAND_NUM;
int nband_refl = NBAND_REFL_MAX;
int ifill, num_zero;
int maxth=0;
int mss_flag=0;
Espa_internal_meta_t xml_metadata; /* XML metadata structure */
Envi_header_t envi_hdr; /* output ENVI header information */
printf ("\nRunning lndcal ...\n");
for (i=1; i<argc; i++)if ( !strcmp(argv[i],"-o") )odometer_flag=1;
/* Read the parameters from the input parameter file */
param = GetParam(argc, argv);
if (param == (Param_t *)NULL) EXIT_ERROR("getting runtime parameters",
"main");
/* Validate the input metadata file */
if (validate_xml_file (param->input_xml_file_name) != SUCCESS)
{ /* Error messages already written */
EXIT_ERROR("Failure validating XML file", "main");
}
/* Initialize the metadata structure */
init_metadata_struct (&xml_metadata);
/* Parse the metadata file into our internal metadata structure; also
allocates space as needed for various pointers in the global and band
metadata */
if (parse_metadata (param->input_xml_file_name, &xml_metadata) != SUCCESS)
{ /* Error messages already written */
EXIT_ERROR("parsing XML file", "main");
}
/* Check to see if the gain and bias values were specified */
if (!existRadGB (&xml_metadata))
EXIT_ERROR("Gains and biases don't exist in XML file (TOA radiance gain "
"and bias fields) for each band. Make sure to utilize the latest LPGS "
"MTL file for conversion to the ESPA internal raw binary format as the "
"gains and biases should be in that file.", "main");
/* Open input file */
input = OpenInput (&xml_metadata);
if (input == (Input_t *)NULL)
EXIT_ERROR("setting up input from XML structure", "main");
/* Get Lookup table */
lut = GetLut(param, input->nband, input);
if (lut == (Lut_t *)NULL) EXIT_ERROR("bad lut file", "main");
nps6= input->size_th.s;
nls6= input->size_th.l;
nps = input->size.s;
nls = input->size.l;
zoomx= nint( (float)nps / (float)nps6 );
zoomy= nint( (float)nls / (float)nls6 );
for (ib = 0; ib < input->nband; ib++)
cal_stats.first[ib] = true;
cal_stats6.first = true;
if (input->meta.inst == INST_MSS)mss_flag=1;
/* Open the output files. Raw binary band files will be be opened. */
output = OpenOutput(&xml_metadata, input, param, lut, false /*not thermal*/,
mss_flag);
if (output == NULL) EXIT_ERROR("opening output file", "main");
/* Allocate memory for the input buffer, enough for all reflectance bands */
input_psize = sizeof(unsigned char);
line_in = calloc (input->size.s * nband_refl, input_psize);
if (line_in == NULL)
EXIT_ERROR("allocating input line buffer", "main");
/* Create and open output thermal band, if one exists */
if ( input->nband_th > 0 ) {
output_th = OpenOutput (&xml_metadata, input, param, lut, true /*thermal*/,
mss_flag);
if (output_th == NULL)
EXIT_ERROR("opening output therm file", "main");
/* Allocate memory for the thermal input and output buffer, only holds
one band */
line_out_th = calloc(input->size_th.s, sizeof(int16));
if (line_out_th == NULL)
EXIT_ERROR("allocating thermal output line buffer", "main");
if (zoomx == 1) {
line_out_thz = line_out_th;
line_in_thz = line_in;
}
else {
line_out_thz = calloc (input->size.s, sizeof(int16));
if (line_out_thz == NULL)
EXIT_ERROR("allocating thermal zoom output line buffer", "main");
line_in_thz = calloc (input->size.s, input_psize);
if (line_in_thz == NULL)
EXIT_ERROR("allocating thermal zoom input line buffer", "main");
}
} else {
printf("*** no output thermal file ***\n");
}
/* Allocate memory for output lines for both the image and QA data */
line_out = calloc (input->size.s, sizeof (int16));
if (line_out == NULL)
EXIT_ERROR("allocating output line buffer", "main");
line_out_qa = calloc (input->size.s, sizeof(unsigned char));
if (line_out_qa == NULL)
EXIT_ERROR("allocating qa output line buffer", "main");
memset (line_out_qa, 0, input->size.s * sizeof(unsigned char));
/* Do for each THERMAL line */
oline= 0;
if (input->nband_th > 0) {
ifill= (int)lut->in_fill;
for (iline = 0; iline < input->size_th.l; iline++) {
ib=0;
if (!GetInputLineTh(input, iline, line_in))
EXIT_ERROR("reading input data for a line", "main");
if ( odometer_flag && ( iline==0 || iline ==(nls-1) || iline%100==0 ) ){
if ( zoomy == 1 )
printf("--- main loop BAND6 Line %d --- \r",iline);
else
printf("--- main loop BAND6 Line in=%d out=%d --- \r",iline,oline);
fflush(stdout);
}
memset(line_out_qa, 0, input->size.s*sizeof(unsigned char));
if (!Cal6(lut, input, line_in, line_out_th, line_out_qa, &cal_stats6,
iline))
EXIT_ERROR("doing calibration for a line", "main");
if ( zoomx>1 ) {
zoomIt(line_out_thz, line_out_th, nps/zoomx, zoomx );
zoomIt8(line_in_thz, line_in, nps/zoomx, zoomx );
}
for ( iz=0; iz<zoomy; iz++ ) {
for (isamp = 0; isamp < input->size.s; isamp++) {
val= getValue(line_in_thz, isamp);
if ( val> maxth) maxth=val;
if ( val==ifill) line_out_qa[isamp] = lut->qa_fill;
else if ( val>=SATU_VAL6 ) line_out_qa[isamp] = ( 0x000001 << 6 );
}
if ( oline<nls ) {
if (!PutOutputLine(output_th, ib, oline, line_out_thz)) {
sprintf(msgbuf,"write thermal error ib=%d oline=%d iline=%d",ib,
oline,iline);
EXIT_ERROR(msgbuf, "main");
}
if (input->meta.inst != INST_MSS)
if (!PutOutputLine(output_th, ib+1, oline, line_out_qa)) {
sprintf(msgbuf,"write thermal QA error ib=%d oline=%d iline=%d",
ib+1,oline,iline);
EXIT_ERROR(msgbuf, "main");
}
}
oline++;
}
} /* end loop for each thermal line */
}
if (odometer_flag) printf("\n");
if (input->nband_th > 0)
if (!CloseOutput(output_th))
EXIT_ERROR("closing output thermal file", "main");
/* Do for each REFLECTIVE line */
ifill= (int)lut->in_fill;
for (iline = 0; iline < input->size.l; iline++){
/* Do for each band */
if ( odometer_flag && ( iline==0 || iline ==(nls-1) || iline%100==0 ) )
{printf("--- main reflective loop Line %d ---\r",iline); fflush(stdout);}
memset(line_out_qa, 0, input->size.s*sizeof(unsigned char));
for (ib = 0; ib < input->nband; ib++) {
if (!GetInputLine(input, ib, iline, &line_in[ib*nps]))
EXIT_ERROR("reading input data for a line", "main");
}
for (isamp = 0; isamp < input->size.s; isamp++){
num_zero=0;
for (ib = 0; ib < input->nband; ib++) {
jb= (ib != 5 ) ? ib+1 : ib+2;
val= getValue((unsigned char *)&line_in[ib*nps], isamp);
if ( val==ifill )num_zero++;
if ( val==SATU_VAL[ib] ) line_out_qa[isamp]|= ( 0x000001 <<jb );
}
/* Feng fixed bug by changing "|=" to "=" below (4/17/09) */
if ( num_zero > 0 )line_out_qa[isamp] = lut->qa_fill;
}
for (ib = 0; ib < input->nband; ib++) {
if (!Cal(lut, ib, input, &line_in[ib*nps], line_out, line_out_qa,
&cal_stats,iline))
EXIT_ERROR("doing calibraton for a line", "main");
if (!PutOutputLine(output, ib, iline, line_out))
EXIT_ERROR("reading input data for a line", "main");
} /* End loop for each band */
if (input->meta.inst != INST_MSS)
if (!PutOutputLine(output, qa_band, iline, line_out_qa))
EXIT_ERROR("writing qa data for a line", "main");
} /* End loop for each line */
if ( odometer_flag )printf("\n");
for (ib = 0; ib < input->nband; ib++) {
printf(
" band %d rad min %8.5g max %8.4f | ref min %8.5f max %8.4f\n",
input->meta.iband[ib], cal_stats.rad_min[ib], cal_stats.rad_max[ib],
cal_stats.ref_min[ib], cal_stats.ref_max[ib]);
}
if ( input->nband_th > 0 )
printf(
" band %d rad min %8.5g max %8.4f | tmp min %8.5f max %8.4f\n", 6,
cal_stats6.rad_min, cal_stats6.rad_max,
cal_stats6.temp_min, cal_stats6.temp_max);
/* Close input and output files */
if (!CloseInput(input)) EXIT_ERROR("closing input file", "main");
if (!CloseOutput(output)) EXIT_ERROR("closing input file", "main");
/* Write the ENVI header for reflectance files */
for (ib = 0; ib < output->nband; ib++) {
/* Create the ENVI header file this band */
if (create_envi_struct (&output->metadata.band[ib], &xml_metadata.global,
&envi_hdr) != SUCCESS)
EXIT_ERROR("Creating the ENVI header structure for this file.", "main");
/* Write the ENVI header */
strcpy (envi_file, output->metadata.band[ib].file_name);
cptr = strchr (envi_file, '.');
strcpy (cptr, ".hdr");
if (write_envi_hdr (envi_file, &envi_hdr) != SUCCESS)
EXIT_ERROR("Writing the ENVI header file.", "main");
}
/* Write the ENVI header for thermal files */
for (ib = 0; ib < output_th->nband; ib++) {
/* Create the ENVI header file this band */
if (create_envi_struct (&output_th->metadata.band[ib], &xml_metadata.global,
&envi_hdr) != SUCCESS)
EXIT_ERROR("Creating the ENVI header structure for this file.", "main");
/* Write the ENVI header */
strcpy (envi_file, output_th->metadata.band[ib].file_name);
cptr = strchr (envi_file, '.');
strcpy (cptr, ".hdr");
if (write_envi_hdr (envi_file, &envi_hdr) != SUCCESS)
EXIT_ERROR("Writing the ENVI header file.", "main");
}
/* Append the reflective and thermal bands to the XML file */
if (append_metadata (output->nband, output->metadata.band,
param->input_xml_file_name) != SUCCESS)
EXIT_ERROR("appending reflectance and QA bands", "main");
if (input->nband_th > 0) {
if (append_metadata (output_th->nband, output_th->metadata.band,
param->input_xml_file_name) != SUCCESS)
EXIT_ERROR("appending thermal and QA bands", "main");
}
/* Free the metadata structure */
free_metadata (&xml_metadata);
/* Free memory */
if (!FreeParam(param))
EXIT_ERROR("freeing parameter stucture", "main");
if (!FreeInput(input))
EXIT_ERROR("freeing input file stucture", "main");
if (!FreeLut(lut))
EXIT_ERROR("freeing lut file stucture", "main");
if (!FreeOutput(output))
EXIT_ERROR("freeing output file stucture", "main");
free(line_out);
line_out = NULL;
free(line_in);
line_in = NULL;
free(line_out_qa);
line_out_qa = NULL;
free(line_out_th);
line_out_th = NULL;
if (zoomx != 1) {
free(line_in_thz);
free(line_out_thz);
}
line_in_thz = NULL;
line_out_thz = NULL;
/* All done */
printf ("lndcal complete.\n");
return (EXIT_SUCCESS);
}
/*****************************************************************************
METHOD: cfmask
PURPOSE: The main routine for fmask written in C
RETURN VALUE: Type = int
Value Description
----- -----------
ERROR An error occurred during processing of cfmask
SUCCESS Processing was successful
*****************************************************************************/
int
main (int argc, char *argv[])
{
char *FUNC_NAME = "main";
char *ext = NULL; /* pointer to the file extension */
char *xml_name = NULL; /* input XML filename */
char envi_file[MAX_STR_LEN]; /* output ENVI file name */
char temp_file[MAX_STR_LEN]; /* temp file name */
int status;
int band_index;
bool verbose; /* verbose flag for printing messages */
bool use_cirrus; /* should we use Cirrus during determination? */
bool use_thermal; /* should we use Thermal during determination? */
Input_t *input = NULL; /* input data and meta data */
Output_t *output = NULL; /* output structure and metadata */
Espa_internal_meta_t xml_metadata; /* XML metadata structure */
Envi_header_t envi_hdr; /* output ENVI header information */
unsigned char *pixel_mask = NULL; /* pixel mask */
unsigned char *conf_mask = NULL; /* confidence mask */
float clear_ptm; /* percent of clear-sky pixels */
float t_templ = 0.0; /* percentile of low background temperature */
float t_temph = 0.0; /* percentile of high background temperature */
int cldpix = 2; /* Default buffer for cloud pixel dilate */
int sdpix = 2; /* Default buffer for shadow pixel dilate */
float cloud_prob; /* Default cloud probability */
float sun_azi_temp = 0.0; /* Keep the original sun azimuth angle */
int pixel_count;
int pixel_index;
time_t now;
time(&now);
/* Read the command-line arguments, including the name of the input
Landsat TOA reflectance product and the DEM */
status = get_args(argc, argv, &xml_name, &cloud_prob, &cldpix,
&sdpix, &use_cirrus, &use_thermal, &verbose);
if (status != SUCCESS)
{
RETURN_ERROR("calling get_args", FUNC_NAME, EXIT_FAILURE);
}
printf("CFmask start_time=%s\n", ctime(&now));
/* Validate the input metadata file */
if (validate_xml_file(xml_name) != SUCCESS)
{
RETURN_ERROR("XML validation error", FUNC_NAME, EXIT_FAILURE);
}
/* Initialize the metadata structure */
init_metadata_struct(&xml_metadata);
/* Parse the metadata file into our internal metadata structure; also
allocates space as needed for various pointers in the global and band
metadata */
if (parse_metadata(xml_name, &xml_metadata) != SUCCESS)
{
RETURN_ERROR("XML parsing error", FUNC_NAME, EXIT_FAILURE);
}
/* Open input file, read metadata, and set up buffers */
input = OpenInput(&xml_metadata, use_thermal);
if (input == NULL)
{
RETURN_ERROR("opening input data specified in input XML",
FUNC_NAME, EXIT_FAILURE);
}
if (verbose)
{
/* Print some info to show how the input metadata works */
printf("Number of input TOA bands: %d\n", input->num_toa_bands);
printf("Number of input thermal bands: %d\n", 1);
printf("Number of input TOA lines: %d\n", input->size.l);
printf("Number of input TOA samples: %d\n", input->size.s);
printf("Fill value is %d\n", input->meta.fill);
for (band_index = 0; band_index < MAX_BAND_COUNT; band_index++)
{
printf("Band %d-->\n", band_index);
if (input->satellite != IS_LANDSAT_8)
{
/* Landsat 8 doesn't have saturation issues */
printf(" band satu_value_ref: %d\n",
input->meta.satu_value_ref[band_index]);
printf(" band satu_value_max: %d\n",
input->meta.satu_value_max[band_index]);
}
printf(" band gain: %f, band bias: %f\n",
input->meta.gain[band_index], input->meta.bias[band_index]);
}
printf("SUN AZIMUTH is %f\n", input->meta.sun_az);
printf("SUN ZENITH is %f\n", input->meta.sun_zen);
}
/* If the scene is an ascending polar scene (flipped upside down), then
the solar azimuth needs to be adjusted by 180 degrees. The scene in
this case would be north down and the solar azimuth is based on north
being up clock-wise direction. Flip the south to be up will not change
the actual sun location, with the below relations, the solar azimuth
angle will need add in 180.0 for correct sun location */
if (input->meta.ul_corner.lat < input->meta.lr_corner.lat)
{
/* Keep the original solar azimuth angle */
sun_azi_temp = input->meta.sun_az;
input->meta.sun_az += 180.0;
if (input->meta.sun_az > 360.0)
{
input->meta.sun_az -= 360.0;
}
if (verbose)
{
printf("Polar or ascending scene."
" Readjusting solar azimuth by 180 degrees.\n"
" New value: %f degrees\n", input->meta.sun_az);
}
}
pixel_count = input->size.l * input->size.s;
/* Dynamic allocate the 2d mask memory */
pixel_mask = calloc(pixel_count, sizeof(unsigned char));
if (pixel_mask == NULL)
{
RETURN_ERROR("Allocating pixel mask memory", FUNC_NAME, EXIT_FAILURE);
}
conf_mask = calloc(pixel_count, sizeof(unsigned char));
if (conf_mask == NULL)
{
RETURN_ERROR("Allocating confidence mask memory",
FUNC_NAME, EXIT_FAILURE);
}
/* Initialize the mask to clear data */
for (pixel_index = 0; pixel_index < pixel_count; pixel_index++)
{
pixel_mask[pixel_index] = CF_NO_BITS;
conf_mask[pixel_index] = CLOUD_CONFIDENCE_NONE;
}
/* Build the potential cloud, shadow, snow, water mask */
status = potential_cloud_shadow_snow_mask(input, cloud_prob, &clear_ptm,
&t_templ, &t_temph, pixel_mask,
conf_mask, use_cirrus,
use_thermal, verbose);
if (status != SUCCESS)
{
RETURN_ERROR("processing potential_cloud_shadow_snow_mask",
FUNC_NAME, EXIT_FAILURE);
}
printf("Potential Cloud Shadow: Done\n");
/* Build the final cloud shadow based on geometry matching and
combine the final cloud, shadow, snow, water masks into fmask
the pixel_mask is a bit mask as input and a value mask as output */
int data_count = 0;
status = object_cloud_shadow_match(input, clear_ptm, t_templ, t_temph,
cldpix, sdpix, pixel_mask, &data_count,
use_thermal, verbose);
if (status != SUCCESS)
{
RETURN_ERROR("processing object_cloud_and_shadow_match",
FUNC_NAME, EXIT_FAILURE);
}
printf("Object Cloud Shadow Matching: Done\n");
/* Convert the pixel_mask to a value mask
Also retrieve and report statistics */
float clear_percent = 0; /* Percent of clear pixels in the image data */
float cloud_percent = 0; /* Percent of cloud pixels in the image data */
float cloud_shadow_percent = 0; /* Percent of cloud shadow pixels in the
image data */
float water_percent = 0; /* Percent of water pixels in the image data */
float snow_percent = 0; /* Percent of snow pixels in the image data */
convert_and_generate_statistics(verbose, pixel_mask,
input->size.l * input->size.s,
data_count, &clear_percent,
&cloud_percent, &cloud_shadow_percent,
&water_percent, &snow_percent);
printf("Statistics Generation: Done\n");
/* Reassign solar azimuth angle for output purpose if south up north
down scene is involved */
if (input->meta.ul_corner.lat < input->meta.lr_corner.lat)
{
input->meta.sun_az = sun_azi_temp;
}
/* Open the output file */
output = OpenOutputCFmask(&xml_metadata, input, clear_percent,
cloud_percent, cloud_shadow_percent,
water_percent, snow_percent);
if (output == NULL)
{
RETURN_ERROR("Opening output file", FUNC_NAME, EXIT_FAILURE);
}
if (!PutOutput(output, pixel_mask))
{
RETURN_ERROR("Writing output fmask files", FUNC_NAME, EXIT_FAILURE);
}
/* Close the output file */
if (!CloseOutput(output))
{
RETURN_ERROR("closing output file", FUNC_NAME, EXIT_FAILURE);
}
/* Create the ENVI header file this band */
if (create_envi_struct(&output->metadata.band[0], &xml_metadata.global,
&envi_hdr) != SUCCESS)
{
RETURN_ERROR("Creating ENVI header structure.", FUNC_NAME,
EXIT_FAILURE);
}
/* Write the ENVI header */
snprintf(temp_file, sizeof(temp_file), "%s",
output->metadata.band[0].file_name);
ext = strrchr(temp_file, '.');
if (ext == NULL)
{
RETURN_ERROR("error in ENVI header filename", FUNC_NAME, EXIT_FAILURE);
}
ext[0] = '\0';
snprintf(envi_file, sizeof(envi_file), "%s.hdr", temp_file);
if (write_envi_hdr(envi_file, &envi_hdr) != SUCCESS)
{
RETURN_ERROR("Writing ENVI header file.", FUNC_NAME, EXIT_FAILURE);
}
/* Append the cfmask band to the XML file */
if (append_metadata(output->nband, output->metadata.band, xml_name)
!= SUCCESS)
{
RETURN_ERROR("Appending spectral index bands to XML file.",
FUNC_NAME, EXIT_FAILURE);
}
/* Free the structure */
if (!FreeOutput(output))
{
RETURN_ERROR("freeing output file structure", FUNC_NAME, EXIT_FAILURE);
}
output = OpenOutputConfidence(&xml_metadata, input);
if (output == NULL)
{
RETURN_ERROR("Opening output file", FUNC_NAME, EXIT_FAILURE);
}
if (!PutOutput(output, conf_mask))
{
RETURN_ERROR("Writing output fmask files", FUNC_NAME, EXIT_FAILURE);
}
/* Close the output file */
if (!CloseOutput(output))
{
RETURN_ERROR("closing output file", FUNC_NAME, EXIT_FAILURE);
}
/* Create the ENVI header file this band */
if (create_envi_struct(&output->metadata.band[0], &xml_metadata.global,
&envi_hdr) != SUCCESS)
{
RETURN_ERROR("Creating ENVI header structure.", FUNC_NAME,
EXIT_FAILURE);
}
/* Write the ENVI header */
snprintf(temp_file, sizeof(temp_file), "%s",
output->metadata.band[0].file_name);
ext = strrchr(temp_file, '.');
if (ext == NULL)
{
RETURN_ERROR("error in ENVI header filename", FUNC_NAME, EXIT_FAILURE);
}
ext[0] = '\0';
snprintf(envi_file, sizeof(envi_file), "%s.hdr", temp_file);
if (write_envi_hdr(envi_file, &envi_hdr) != SUCCESS)
{
RETURN_ERROR("Writing ENVI header file.", FUNC_NAME, EXIT_FAILURE);
}
/* Append the cfmask band to the XML file */
if (append_metadata(output->nband, output->metadata.band,
xml_name) != SUCCESS)
{
RETURN_ERROR("Appending spectral index bands to XML file.",
FUNC_NAME, EXIT_FAILURE);
}
/* Free the structure */
if (!FreeOutput(output))
{
RETURN_ERROR("freeing output file structure", FUNC_NAME, EXIT_FAILURE);
}
/* Free the metadata structure */
free_metadata(&xml_metadata);
/* Free the pixel mask */
free(pixel_mask);
pixel_mask = NULL;
free(conf_mask);
conf_mask = NULL;
/* Close the input file and free the structure */
CloseInput(input);
FreeInput(input);
free(xml_name);
xml_name = NULL;
printf("Processing complete.\n");
time(&now);
printf("CFmask end_time=%s\n", ctime(&now));
return SUCCESS;
}
/******************************************************************************
METHOD: lst
PURPOSE: The main routine for scene based LST (Land Surface Temperature).
RETURN VALUE:
Type = int
Value Description
----- -----------
ERROR An error occurred during processing of the scene_based_lst
SUCCESS Processing was successful
PROJECT: Land Satellites Data System Science Research and Development (LSRD)
at the USGS EROS
******************************************************************************/
int
main (int argc, char *argv[])
{
char FUNC_NAME[] = "main";
Espa_internal_meta_t xml_metadata; /* XML metadata structure */
char msg_str[MAX_STR_LEN];
char xml_filename[PATH_MAX]; /* input XML filename */
char dem_filename[PATH_MAX]; /* input DEM filename */
char emissivity_filename[PATH_MAX]; /* input Emissivity filename */
char command[PATH_MAX];
Input_t *input = NULL; /* input data and meta data */
// Output_t *output = NULL; /* output structure and metadata */
bool use_tape6; /* Use the tape6 output */
bool verbose; /* verbose flag for printing messages */
bool debug; /* debug flag for debug output */
int modtran_run;
double alb = 0.1;
double **modtran_results = NULL;
char *tmp_env = NULL;
REANALYSIS_POINTS points;
time_t now;
/* Display the starting time of the application */
time (&now);
snprintf (msg_str, sizeof(msg_str),
"LST start_time [%s]", ctime (&now));
LOG_MESSAGE (msg_str, FUNC_NAME);
/* Read the command-line arguments, including the name of the input
Landsat TOA reflectance product and the DEM */
if (get_args (argc, argv, xml_filename, dem_filename, emissivity_filename,
&use_tape6, &verbose, &debug) != SUCCESS)
{
RETURN_ERROR ("calling get_args", FUNC_NAME, EXIT_FAILURE);
}
/* Verify the existence of required environment variables */
/* Grab the environment path to the LST_DATA_DIR */
tmp_env = getenv ("LST_DATA_DIR");
if (tmp_env == NULL)
{
RETURN_ERROR ("LST_DATA_DIR environment variable is not set",
FUNC_NAME, EXIT_FAILURE);
}
/* Validate the input metadata file */
if (validate_xml_file (xml_filename) != SUCCESS)
{
/* Error messages already written */
return EXIT_FAILURE;
}
/* Initialize the metadata structure */
init_metadata_struct (&xml_metadata);
/* Parse the metadata file into our internal metadata structure; also
allocates space as needed for various pointers in the global and band
metadata */
if (parse_metadata (xml_filename, &xml_metadata) != SUCCESS)
{
/* Error messages already written */
return EXIT_FAILURE;
}
/* Open input file, read metadata, and set up buffers */
input = OpenInput (&xml_metadata);
if (input == NULL)
{
RETURN_ERROR ("opening input files", FUNC_NAME, EXIT_FAILURE);
}
if (verbose)
{
/* Print some info to show how the input metadata works */
printf ("Satellite: %d\n", input->meta.satellite);
printf ("Instrument: %d\n", input->meta.instrument);
printf ("Number of input lines: %d\n", input->thermal.size.l);
printf ("Number of input samples: %d\n", input->thermal.size.s);
printf ("Fill value is %d\n", input->thermal.fill_value);
printf ("Thermal Band -->\n");
printf (" therm_gain: %f\n therm_bias: %f\n",
input->thermal.rad_gain, input->thermal.rad_bias);
printf ("Year, Month, Day, Hour, Minute, Second:"
" %d, %d, %d, %d, %d, %f\n",
input->meta.acq_date.year, input->meta.acq_date.month,
input->meta.acq_date.day, input->meta.acq_date.hour,
input->meta.acq_date.minute, input->meta.acq_date.second);
printf ("ACQUISITION_DATE.DOY is %d\n",
input->meta.acq_date.doy);
printf ("UL_MAP_CORNER: %f, %f\n", input->meta.ul_map_corner.x,
input->meta.ul_map_corner.y);
printf ("LR_MAP_CORNER: %f, %f\n", input->meta.lr_map_corner.x,
input->meta.lr_map_corner.y);
printf ("UL_GEO_CORNER: %f, %f\n",
input->meta.ul_geo_corner.lat, input->meta.ul_geo_corner.lon);
printf ("LR_GEO_CORNER: %f, %f\n",
input->meta.lr_geo_corner.lat, input->meta.lr_geo_corner.lon);
}
/* Build the points that will be used */
if (build_points (input, &points) != SUCCESS)
{
RETURN_ERROR ("Building POINTS input\n", FUNC_NAME, EXIT_FAILURE);
}
if (verbose)
{
printf ("Number of Points: %d\n", points.num_points);
}
/* Call build_modtran_input to generate the tape5 file input and
the MODTRAN commands for each point and height */
if (build_modtran_input (input, &points, verbose, debug)
!= SUCCESS)
{
RETURN_ERROR ("Building MODTRAN input\n", FUNC_NAME, EXIT_FAILURE);
}
/* Perform MODTRAN runs by calling each command */
for (modtran_run = 0; modtran_run < points.num_modtran_runs; modtran_run++)
{
snprintf (msg_str, sizeof(msg_str),
"Executing MODTRAN [%s]",
points.modtran_runs[modtran_run].command);
LOG_MESSAGE (msg_str, FUNC_NAME);
#if RUN_MODTRAN
if (system (points.modtran_runs[modtran_run].command) != SUCCESS)
{
RETURN_ERROR ("Error executing MODTRAN", FUNC_NAME,
EXIT_FAILURE);
}
#endif
}
/* PARSING MODTRAN RESULTS:
for each case in caseList (for each modtran run),
parse wavelength and total radiance from tape6 file into parsed */
for (modtran_run = 0; modtran_run < points.num_modtran_runs; modtran_run++)
{
if (use_tape6)
{
/* Use modtran generated tape6 output */
snprintf (command, sizeof (command),
"lst_extract_modtran_results.py"
" --tape6"
" --input-path %s"
" --output-path %s",
points.modtran_runs[modtran_run].path,
points.modtran_runs[modtran_run].path);
}
else
{
/* Use modtran generated pltout.asc output */
snprintf (command, sizeof (command),
"lst_extract_modtran_results.py"
" --pltout"
" --input-path %s"
" --output-path %s",
points.modtran_runs[modtran_run].path,
points.modtran_runs[modtran_run].path);
}
snprintf (msg_str, sizeof(msg_str), "Executing [%s]", command);
LOG_MESSAGE (msg_str, FUNC_NAME);
#if EXTRACT_TAPE6_RESULTS
if (system (command) != SUCCESS)
{
RETURN_ERROR ("Failed executing lst_extract_tape6_results.py",
FUNC_NAME, EXIT_FAILURE);
}
#endif
}
/* Allocate memory for MODTRAN results */
modtran_results =
(double **) allocate_2d_array (points.num_points * NUM_ELEVATIONS,
MGPE_NUM_ELEMENTS, sizeof (double));
if (modtran_results == NULL)
{
RETURN_ERROR ("Allocating MODTRAN results memory", FUNC_NAME,
EXIT_FAILURE);
}
/* Generate parameters for each height and NARR point */
if (calculate_point_atmospheric_parameters (input, &points, alb,
modtran_results, verbose)
!= SUCCESS)
{
RETURN_ERROR ("Calculating point atmospheric parameters\n",
FUNC_NAME, EXIT_FAILURE);
}
/* Generate parameters for each Landsat pixel */
if (calculate_pixel_atmospheric_parameters (input, &points,
xml_filename,
dem_filename,
emissivity_filename,
modtran_results, verbose)
!= SUCCESS)
{
RETURN_ERROR ("Calculating per/pixel atmospheric parameters\n",
FUNC_NAME, EXIT_FAILURE);
}
/* Free memory allocation */
free_points_memory (&points);
#if NOT_TESTED
/* Open the output file */
output = OpenOutput (&xml_metadata, input);
if (output == NULL)
{ /* error message already printed */
RETURN_ERROR ("Opening output file", FUNC_NAME, EXIT_FAILURE);
}
if (!PutOutput (output, pixel_mask))
{
RETURN_ERROR ("Writing output LST in HDF files\n", FUNC_NAME,
EXIT_FAILURE);
}
/* Close the output file */
if (!CloseOutput (output))
{
RETURN_ERROR ("closing output file", FUNC_NAME, EXIT_FAILURE);
}
/* Create the ENVI header file this band */
if (create_envi_struct (&output->metadata.band[0], &xml_metadata.global,
&envi_hdr) != SUCCESS)
{
RETURN_ERROR ("Creating ENVI header structure.", FUNC_NAME,
EXIT_FAILURE);
}
/* Write the ENVI header */
strcpy (envi_file, output->metadata.band[0].file_name);
cptr = strchr (envi_file, '.');
if (cptr == NULL)
{
RETURN_ERROR ("error in ENVI header filename", FUNC_NAME,
EXIT_FAILURE);
}
strcpy (cptr, ".hdr");
if (write_envi_hdr (envi_file, &envi_hdr) != SUCCESS)
{
RETURN_ERROR ("Writing ENVI header file.", FUNC_NAME, EXIT_FAILURE);
}
/* Append the LST band to the XML file */
if (append_metadata (output->nband, output->metadata.band, xml_filename)
!= SUCCESS)
{
RETURN_ERROR ("Appending spectral index bands to XML file.",
FUNC_NAME, EXIT_FAILURE);
}
/* Free the structure */
if (!FreeOutput (output))
{
RETURN_ERROR ("freeing output file structure", FUNC_NAME,
EXIT_FAILURE);
}
#endif
/* Free the metadata structure */
free_metadata (&xml_metadata);
/* Close the input file and free the structure */
CloseInput (input);
FreeInput (input);
/* Free memory allocations */
if (free_2d_array ((void **) modtran_results) != SUCCESS)
{
RETURN_ERROR ("Freeing memory: MODTRAN results\n", FUNC_NAME,
EXIT_FAILURE);
}
if (!debug)
{
/* Delete temporary file */
if (unlink ("atmospheric_parameters.txt") != SUCCESS)
{
RETURN_ERROR ("Deleting atmospheric_parameters.txt files\n",
FUNC_NAME, EXIT_FAILURE);
}
if (unlink ("base_head.txt") != SUCCESS)
{
RETURN_ERROR ("Deleting baseHead.txt files\n", FUNC_NAME,
EXIT_FAILURE);
}
if (unlink ("new_tail.txt") != SUCCESS)
{
RETURN_ERROR ("Deleting newTail.txt files\n", FUNC_NAME,
EXIT_FAILURE);
}
if (unlink ("temp_layers.txt") != SUCCESS)
{
RETURN_ERROR ("Deleting tempLayers.txt file\n", FUNC_NAME,
EXIT_FAILURE);
}
if (unlink ("used_points.txt") != SUCCESS)
{
RETURN_ERROR ("Deleting used_points.txt file\n", FUNC_NAME,
EXIT_FAILURE);
}
}
time (&now);
snprintf (msg_str, sizeof(msg_str),
"scene_based_lst end_time=%s\n", ctime (&now));
LOG_MESSAGE (msg_str, FUNC_NAME);
return EXIT_SUCCESS;
}
/******************************************************************************
MODULE: main
PURPOSE: Creates the Landsat solar and view/satellite per-pixel angles. Both
the zenith and azimuth angles are created for each angle type for the
representative band.
RETURN VALUE:
Type = int
Value Description
----- -----------
ERROR Error creating the angle bands
SUCCESS No errors encountered
NOTES:
1. Angles are written in degrees and scaled by 100.
2. There are 4 bands written for the representative band: solar zenith, solar
azimuth, sensor zenith, sensor azimuth.
3. The landsat_per_pixel_angles library expects an array of solar/satellite
azimuth/zenith pointers for all the input bands, as that's the possible
full list of output bands. So, even though we are not processing all the
bands in the output list, we still need to provide an array of that size.
This requires us to keep track of the indices for each of the output bands
into the array of input bands, for both ETM and TM arrays.
******************************************************************************/
int main (int argc, char** argv)
{
char FUNC_NAME[] = "create_angle_bands"; /* function name */
char errmsg[STR_SIZE]; /* error message */
char tmpstr[STR_SIZE]; /* temporary string */
char tmpfile[STR_SIZE]; /* temporary filename */
char ang_infile[STR_SIZE]; /* input angle coefficient filename */
char outfile[STR_SIZE]; /* output base filename for angle bands */
char band_list[STR_SIZE]; /* char array of list of bands to process */
char etm_list[] = "4"; /* list of ETM bands to process */
char tm_list[] = "4"; /* list of TM bands to process */
char production_date[MAX_DATE_LEN+1]; /* current date/year for production */
char band_angle[NANGLE_BANDS][STR_SIZE] = {"solar zenith", "solar azimuth",
"sensor zenith", "sensor azimuth"};
char *cptr = NULL; /* pointer to file extension */
char *xml_infile = NULL; /* input XML filename */
bool process_l7 = false; /* are we processing L7 vs. L4-5 */
bool process_l45 = false; /* are we processing L4-5 vs. L7 */
int i; /* looping variable for bands */
int curr_bnd; /* current input band location */
int curr_band; /* current input band number */
int curr_bndx; /* index of current input band */
int curr_index; /* index of current output band in the input
band array */
int etm_nbands = 1; /* number of ETM bands to process for PPA */
int tm_nbands = 1; /* number of TM bands to process for PPA */
int landsat_nbands; /* number of bands to process for PPA */
int *landsat_bands = NULL; /* array of output bands to be processed;
set to point to either etm_bands or
tm_bands */
int etm_bands[] = {4}; /* output bands to be processed */
int tm_bands[] = {4}; /* output bands to be processed */
int *band_indx = NULL; /* array of indices for the output bands within
the full set of input bands; set to point
to either etm_band_indx or tm_band_indx */
int etm_band_indx[] = {3}; /* index in the overall input bands for
the output bands [1,2,3,4,5,61,62,7,8] */
int tm_band_indx[] = {3}; /* index in the overall input bands for
the output bands [1,2,3,4,5,6,7,8] */
int out_nbands; /* number of output bands to be written */
int nlines[L7_NBANDS]; /* number of lines for each band */
int nsamps[L7_NBANDS]; /* number of samples for each band */
Angle_band_t ang; /* looping variable for solar/senor angle */
short *solar_zenith[L7_NBANDS]; /* array of pointers for the solar zenith
angle array, one per band */
short *solar_azimuth[L7_NBANDS]; /* array of pointers for the solar azimuth
angle array, one per band */
short *sat_zenith[L7_NBANDS]; /* array of pointers for the satellite
zenith angle array, one per band */
short *sat_azimuth[L7_NBANDS]; /* array of pointers for the satellite
azimuth angle array, one per band */
short *curr_angle = NULL; /* pointer to the current angle array */
time_t tp; /* time structure */
struct tm *tm = NULL; /* time structure for UTC time */
FILE *fptr=NULL; /* file pointer */
Envi_header_t envi_hdr; /* output ENVI header information */
Espa_internal_meta_t xml_metadata;
/* XML metadata structure to be populated by
reading the input XML metadata file */
Espa_band_meta_t *bmeta=NULL; /* pointer to array of bands metadata */
Espa_global_meta_t *gmeta=NULL; /* pointer to the global metadata struct */
Espa_band_meta_t *out_bmeta = NULL; /* band metadata for angle bands */
Espa_internal_meta_t out_meta; /* output metadata for angle bands */
/* Read the command-line arguments */
if (get_args (argc, argv, &xml_infile) != SUCCESS)
{ /* get_args already printed the error message */
exit (ERROR);
}
printf ("Processing the per-pixel angle bands for L4-7 ...\n");
/* Validate the input metadata file */
if (validate_xml_file (xml_infile) != SUCCESS)
{ /* Error messages already written */
return (ERROR);
}
/* Initialize the metadata structure */
init_metadata_struct (&xml_metadata);
/* Parse the metadata file into our internal metadata structure; also
allocates space as needed for various pointers in the global and band
metadata */
if (parse_metadata (xml_infile, &xml_metadata) != SUCCESS)
{ /* Error messages already written */
return (ERROR);
}
bmeta = xml_metadata.band;
gmeta = &xml_metadata.global;
/* Determine which instrument is being processed */
if (!strncmp (gmeta->instrument, "ETM", 3))
process_l7 = true;
else
process_l45 = true;
/* Determine the angle coefficient filename and the output file basename */
strcpy (ang_infile, xml_infile);
cptr = strchr (ang_infile, '.');
strcpy (cptr, "_ANG.txt");
strcpy (outfile, xml_infile);
cptr = strchr (outfile, '.');
*cptr = '\0';
/* Initialize the output metadata structure. The global metadata will
not be used and will not be valid. */
init_metadata_struct (&out_meta);
/* Determine the number of output bands */
if (process_l7)
{
landsat_bands = etm_bands;
landsat_nbands = etm_nbands;
out_nbands = landsat_nbands * NANGLE_BANDS;
band_indx = etm_band_indx;
strcpy (band_list, etm_list);
}
else
{
landsat_bands = tm_bands;
landsat_nbands = tm_nbands;
out_nbands = landsat_nbands * NANGLE_BANDS;
band_indx = tm_band_indx;
strcpy (band_list, tm_list);
}
/* Allocate memory for the output bands */
if (allocate_band_metadata (&out_meta, out_nbands) != SUCCESS)
{
sprintf (errmsg, "Cannot allocate memory for the %d angle bands",
out_nbands);
error_handler (true, FUNC_NAME, errmsg);
exit (ERROR);
}
/* Get the current date/time (UTC) for the production date of each band */
if (time (&tp) == -1)
{
sprintf (errmsg, "Unable to obtain the current time.");
error_handler (true, FUNC_NAME, errmsg);
exit (ERROR);
}
tm = gmtime (&tp);
if (tm == NULL)
{
sprintf (errmsg, "Converting time to UTC.");
error_handler (true, FUNC_NAME, errmsg);
exit (ERROR);
}
if (strftime (production_date, MAX_DATE_LEN, "%Y-%m-%dT%H:%M:%SZ", tm) == 0)
{
sprintf (errmsg, "Formatting the production date/time.");
error_handler (true, FUNC_NAME, errmsg);
exit (ERROR);
}
/* Initialize the Landsat angle bands to NULL */
init_per_pixel_angles (solar_zenith, solar_azimuth, sat_zenith,
sat_azimuth);
/* Create the Landsat angle bands for the specified bands. Create a full
resolution product. */
if (landsat_per_pixel_angles (ang_infile, 1, band_list, solar_zenith,
solar_azimuth, sat_zenith, sat_azimuth, nlines, nsamps) != SUCCESS)
{ /* Error messages already written */
free_per_pixel_angles (solar_zenith, solar_azimuth, sat_zenith,
sat_azimuth);
exit (ERROR);
}
/* Setup the XML file for these bands */
for (i = 0; i < out_nbands; i++)
{
/* Set up the band metadata for the current band */
out_bmeta = &out_meta.band[i];
strcpy (out_bmeta->product, "angle_bands");
strcpy (out_bmeta->source, "level1");
strcpy (out_bmeta->category, "image");
/* Setup filename-related items for all four bands: solar zenith,
solar azimuth, sensor zenith, sensor azimuth. L4-5 and L8 band
numbers follow a normal numbering scheme. L7 band numbering
needs a little help to get it correct. */
curr_bnd = i / NANGLE_BANDS + 1; /* current input band number */
curr_bndx = curr_bnd - 1; /* index of current input band */
curr_band = landsat_bands[curr_bndx]; /* actual band number */
curr_index = band_indx[curr_bndx]; /* index in output array */
switch (i % NANGLE_BANDS)
{
case (SOLAR_ZEN): /* solar zenith */
/* Determine the output file for the solar zenith band */
snprintf (tmpfile, sizeof (tmpfile),
"%s_b%d_solar_zenith.img", outfile, curr_band);
sprintf (out_bmeta->name, "solar_zenith_band%d", curr_band);
strncpy (tmpstr, bmeta[curr_bndx].short_name, 4);
tmpstr[4] = '\0';
sprintf (out_bmeta->short_name, "%sSOLZEN", tmpstr);
sprintf (out_bmeta->long_name,
"band %d solar zenith angles", curr_band);
break;
case (SOLAR_AZ): /* solar azimuth */
/* Determine the output file for the solar azimuth band */
snprintf (tmpfile, sizeof (tmpfile),
"%s_b%d_solar_azimuth.img", outfile, curr_band);
sprintf (out_bmeta->name, "solar_azimuth_band%d",
curr_band);
strncpy (tmpstr, bmeta[curr_bndx].short_name, 4);
tmpstr[4] = '\0';
sprintf (out_bmeta->short_name, "%sSOLAZ", tmpstr);
sprintf (out_bmeta->long_name,
"band %d solar azimuth angles", curr_band);
break;
case (SENSOR_ZEN): /* sensor zenith */
/* Determine the output file for the sensor zenith band */
snprintf (tmpfile, sizeof (tmpfile),
"%s_b%d_sensor_zenith.img", outfile, curr_band);
sprintf (out_bmeta->name, "sensor_zenith_band%d",
curr_band);
strncpy (tmpstr, bmeta[curr_bndx].short_name, 4);
tmpstr[4] = '\0';
sprintf (out_bmeta->short_name, "%sSENZEN", tmpstr);
sprintf (out_bmeta->long_name,
"band %d sensor zenith angles", curr_band);
break;
case (SENSOR_AZ): /* sensor azimuth */
/* Determine the output file for the sensor azimuth band */
snprintf (tmpfile, sizeof (tmpfile),
"%s_b%d_sensor_azimuth.img", outfile, curr_band);
sprintf (out_bmeta->name, "sensor_azimuth_band%d",
curr_band);
strncpy (tmpstr, bmeta[curr_bndx].short_name, 4);
tmpstr[4] = '\0';
sprintf (out_bmeta->short_name, "%sSENAZ", tmpstr);
sprintf (out_bmeta->long_name,
"band %d sensor azimuth angles", curr_band);
break;
}
snprintf (out_bmeta->file_name, sizeof (out_bmeta->file_name), "%s",
tmpfile);
out_bmeta->data_type = ESPA_INT16;
out_bmeta->fill_value = ANGLE_BAND_FILL;
out_bmeta->scale_factor = ANGLE_BAND_SCALE_FACT;
strcpy (out_bmeta->data_units, "degrees");
out_bmeta->nlines = nlines[curr_index];
out_bmeta->nsamps = nsamps[curr_index];
out_bmeta->pixel_size[0] = bmeta[curr_bndx].pixel_size[0];
out_bmeta->pixel_size[1] = bmeta[curr_bndx].pixel_size[1];
strcpy (out_bmeta->pixel_units, bmeta[curr_bndx].pixel_units);
sprintf (out_bmeta->app_version, "create_angle_bands_%s",
ESPA_COMMON_VERSION);
strcpy (out_bmeta->production_date, production_date);
}
/* Loop through the four different angle files and write them for each
band */
for (ang = 0; ang < NANGLE_BANDS; ang++)
{
/* Write the angle bands */
for (i = 0; i < landsat_nbands; i++)
{
/* Determine the index of this band in the overall list of input
bands */
curr_index = band_indx[i];
/* Grab the correct data array to be written for this angle
band */
switch (ang)
{
case (SOLAR_ZEN):
curr_angle = &solar_zenith[curr_index][0];
break;
case (SOLAR_AZ):
curr_angle = &solar_azimuth[curr_index][0];
break;
case (SENSOR_ZEN):
curr_angle = &sat_zenith[curr_index][0];
break;
case (SENSOR_AZ):
curr_angle = &sat_azimuth[curr_index][0];
break;
default:
free_per_pixel_angles (solar_zenith, solar_azimuth,
sat_zenith, sat_azimuth);
sprintf (errmsg, "Invalid angle type %d", ang);
error_handler (true, FUNC_NAME, errmsg);
exit (ERROR);
}
/* Open the output file for this band */
out_bmeta = &out_meta.band[i*NANGLE_BANDS + ang];
fptr = open_raw_binary (out_bmeta->file_name, "wb");
if (!fptr)
{
free_per_pixel_angles (solar_zenith, solar_azimuth, sat_zenith,
sat_azimuth);
sprintf (errmsg, "Unable to open the %s file",
band_angle[ang]);
error_handler (true, FUNC_NAME, errmsg);
exit (ERROR);
}
/* Write the data for this band */
if (write_raw_binary (fptr, nlines[curr_index], nsamps[curr_index],
sizeof (short), curr_angle) != SUCCESS)
{
free_per_pixel_angles (solar_zenith, solar_azimuth, sat_zenith,
sat_azimuth);
sprintf (errmsg, "Unable to write to the %s file",
band_angle[ang]);
error_handler (true, FUNC_NAME, errmsg);
exit (ERROR);
}
/* Close the file for this band */
close_raw_binary (fptr);
/* Create the ENVI header */
if (create_envi_struct (out_bmeta, gmeta, &envi_hdr) != SUCCESS)
{
free_per_pixel_angles (solar_zenith, solar_azimuth, sat_zenith,
sat_azimuth);
sprintf (errmsg, "Error creating the ENVI header file.");
error_handler (true, FUNC_NAME, errmsg);
exit (ERROR);
}
/* Write the ENVI header */
sprintf (tmpfile, "%s", out_bmeta->file_name);
sprintf (&tmpfile[strlen(tmpfile)-3], "hdr");
if (write_envi_hdr (tmpfile, &envi_hdr) != SUCCESS)
{
free_per_pixel_angles (solar_zenith, solar_azimuth, sat_zenith,
sat_azimuth);
sprintf (errmsg, "Writing the ENVI header file: %s.",
tmpfile);
error_handler (true, FUNC_NAME, errmsg);
exit (ERROR);
}
} /* for i < landsat_nbands */
} /* for ang < NANGLE_BANDS */
/* Free the pointers */
free_per_pixel_angles (solar_zenith, solar_azimuth, sat_zenith,
sat_azimuth);
/* Append the solar/sensor angle bands to the XML file */
if (append_metadata (out_nbands, out_meta.band, xml_infile) != SUCCESS)
{
sprintf (errmsg, "Appending solar/sensor angle bands to the XML file.");
error_handler (true, FUNC_NAME, errmsg);
exit (ERROR);
}
/* Free the input and output XML metadata */
free_metadata (&xml_metadata);
free_metadata (&out_meta);
/* Free the pointers */
free (xml_infile);
/* Successful completion */
exit (SUCCESS);
}