void TestFileGenerator::WriteExpressionCDFFile(const std::string& filename, u_int32_t probeSetCnt)
{
wchar_t name[100];
u_int8_t unitType = 3;
u_int8_t direction = 1;
u_int32_t atoms = 11;
u_int8_t cellsPerAtom = 2;
u_int32_t cells = atoms*cellsPerAtom;
CDFData data(filename);
data.SetProbeSetCnt(probeSetCnt, Expression);
data.SetArrayCols(atoms);
data.SetArrayRows(probeSetCnt*cellsPerAtom);
CDFFileWriter writer(data);
for (u_int32_t i = 0; i < probeSetCnt; ++i)
{
// make the unit name
FormatString1(name, 100, L"biob_%d", i);
writer.OpenDataGroup(name, 1);
CDFProbeSetWriter* probeWriter = writer.CreateProbeSetWriter(name,unitType,direction,atoms,cells,i,cellsPerAtom);
probeWriter->WriteHeader();
for (u_int32_t atom = 0; atom < atoms; ++atom)
{
for (u_int32_t cellInAtom = 0; cellInAtom < cellsPerAtom; ++cellInAtom)
{
probeWriter->Write(atom,i*cellsPerAtom+cellInAtom,atom,atom,'C','G');
}
}
probeWriter->Close();
delete probeWriter;
writer.CloseDataGroup();
}
}
void CDFFileWriterTest::WriteTest()
{
writer->OpenDataGroup(L"affy probe set 1", 1);
CDFProbeSetWriter* probeWriter = writer->CreateProbeSetWriter(L"xda block name",100,100,33,17,3009,100);
probeWriter->WriteHeader();
probeWriter->Write(10,10,100,45,11,11);
probeWriter->Close();
delete probeWriter;
writer->CloseDataGroup();
writer->OpenDataGroup(L"affy probe set 2", 1);
probeWriter = writer->CreateProbeSetWriter(L"xda block name",100,100,33,17,3009,100);
probeWriter->WriteHeader();
probeWriter->Write(10,10,100,45,11,11);
probeWriter->Close();
delete probeWriter;
writer->CloseDataGroup();
writer->OpenDataGroup(L"affy probe set 3", 1);
probeWriter = writer->CreateProbeSetWriter(L"xda block name",100,100,33,17,3009,100);
probeWriter->WriteHeader();
probeWriter->Write(10,10,100,45,11,11);
probeWriter->Close();
delete probeWriter;
writer->CloseDataGroup();
writer->OpenDataGroup(L"affy probe set 4", 1);
probeWriter = writer->CreateProbeSetWriter(L"xda block name",100,100,33,17,3009,100);
probeWriter->WriteHeader();
probeWriter->Write(10,10,100,45,11,11);
probeWriter->Close();
delete probeWriter;
writer->CloseDataGroup();
CPPUNIT_ASSERT(1);
}
