GraphType* create_graph(std::vector< EdgeType >& edges,
std::vector<int>& curr_edge_cap,
std::vector<int>& curr_lambda_cap,
const std::vector<int>& fg_nodes, const int INFTY,
const int NUM_NODES, const bool fg_cap_inf) {
bool is_fg;
GraphType *g = new GraphType(NUM_NODES, edges.size());
g->add_node(NUM_NODES);
for (unsigned int i = 0; i < NUM_NODES; ++i) {
is_fg = false;
for (unsigned int j = 0; j < fg_nodes.size(); ++j) {
if (i == fg_nodes[j]) {
is_fg = true;
break;
}
}
if (is_fg)
g->add_tweights(i, /* capacities */(fg_cap_inf ? INFTY : curr_lambda_cap[i]), 0);
else
g->add_tweights(i, /* capacities */0, curr_lambda_cap[i]);
}
/* capacity edges */
for (unsigned int i = 0; i < edges.size(); ++i) {
g->add_edge(edges[i].first, edges[i].second, curr_edge_cap[i],
curr_edge_cap[i]);
}
return g;
}
void example1() {
typedef Graph<int, int, int> GraphType;
GraphType *g = new GraphType(/*estimated # of nodes*/2, /*estimated # of edges*/
1);
g->add_node();
g->add_node();
g->add_tweights(0, /* capacities */3, 9);
g->add_tweights(1, /* capacities */8, 1);
g->add_edge(0, 1, /* capacities */3, 4);
int flow = g->maxflow();
std::cout << "Flow = " << flow << std::endl;
std::cout << "Minimum cut:" << std::endl;
for (int i = 0; i < g->get_node_num(); ++i) {
if (g->what_segment(i) == GraphType::SOURCE)
std::cout << "node " << i << " is in the SOURCE set" << std::endl;
else
std::cout << "node " << i << " is in the SINK set" << std::endl;
}
delete g;
}
GraphType* construct_graph(const int NUM_NODES, const int NUM_EDGES,
const int bg_cap[], const int edges_a[],
const int edges_b[], const int edges_cap[],
GraphType::FGSeedsType& fg_nodes,
const int lambda) {
GraphType::SrcSeedNode* it;
GraphType *g = new GraphType(NUM_NODES, NUM_EDGES);
g->add_node(NUM_NODES);
/* add unary edges */
for (unsigned int i = 0; i < g->get_node_num(); ++i) {
int fg_node_id = get_node_source_id(i, fg_nodes, it);
if (fg_node_id == INVALID_SRC_ID) {
g->add_tweights(i, /* capacities */0, bg_cap[i] + lambda);
} else {
g->add_tweights(i, /* capacities */infty, 0);
it->second.first = infty;
it->second.second = bg_cap[i] + lambda;
}
g->set_node_source_idx(i, fg_node_id);
}
/* add pairwise edges */
for (unsigned int i = 0; i < NUM_EDGES; ++i)
g->add_edge(edges_a[i], edges_b[i], edges_cap[i], edges_cap[i]);
return g;
}
void GCOutputBoykovWorker::run()
{
const int width = m_SourceImage.width();
const int height = m_SourceImage.height();
const int nLabels = 2;
cv::Mat src(height, width, CV_8UC3, m_SourceImage.bits(), m_SourceImage.bytesPerLine());
// Allocate graph
int num_nodes = width * height;
int num_edges = (width-1)*height + width*(height-1);
typedef Graph<int,int,int> GraphType;
GraphType* graph = new GraphType(num_nodes, num_edges);
graph->add_node(num_nodes);
// Initialize Data Term
generateDataTerm([graph,width](int x, int y, int dterm1, int dterm2){
GraphType::node_id node = y * width + x;
graph->add_tweights(node, dterm1, dterm2);
});
// Initialize Smoothness Term
generateSmoothTerm([graph,width](int x1, int y1, int x2, int y2, int cap1, int cap2){
GraphType::node_id node1, node2;
node1 = y1 * width + x1, node2 = y2 * width + x2;
graph->add_edge(node1, node2, cap1, cap2);
});
// Compute
int flow = graph->maxflow();
qDebug("Flow = %d", flow);
// Read Result
QImage destImage(width, height, QImage::Format_RGB888);
cv::Mat dst(height, width, CV_8UC3, destImage.bits(), destImage.bytesPerLine());
for (int y = 0; y < dst.rows; ++y) {
for (int x = 0; x < dst.cols; ++x) {
GraphType::node_id node = y * width + x;
if (graph->what_segment(node) == GraphType::SOURCE) {
dst.at<cv::Vec3b>(y,x)[0] = 255;
dst.at<cv::Vec3b>(y,x)[1] = 255;
dst.at<cv::Vec3b>(y,x)[2] = 255;
} else {
dst.at<cv::Vec3b>(y,x)[0] = 0;
dst.at<cv::Vec3b>(y,x)[1] = 0;
dst.at<cv::Vec3b>(y,x)[2] = 0;
}
}
}
delete graph;
emit completed(destImage);
}
int main(int argc, char** argv)
{
// Check arguments
if (argc < 3) {
std::cerr << "Usage: " << argv[0] << " NODES_FILE TETS_FILE\n";
exit(1);
}
// Construct a Graph
typedef Graph<int, int> GraphType;
GraphType graph;
std::vector<GraphType::node_type> nodes;
// Create a nodes_file from the first input argument
std::ifstream nodes_file(argv[1]);
// Interpret each line of the nodes_file as a 3D Point and add to the Graph
Point p;
while (CME212::getline_parsed(nodes_file, p))
nodes.push_back(graph.add_node(p));
// Create a tets_file from the second input argument
std::ifstream tets_file(argv[2]);
// Interpret each line of the tets_file as four ints which refer to nodes
std::array<int,4> t;
while (CME212::getline_parsed(tets_file, t))
for (unsigned i = 1; i < t.size(); ++i)
for (unsigned j = 0; j < i; ++j)
graph.add_edge(nodes[t[i]], nodes[t[j]]);
// Print out the stats
std::cout << graph.num_nodes() << " " << graph.num_edges() << std::endl;
// Launch the SDLViewer
CME212::SDLViewer viewer;
viewer.launch();
auto node_map = viewer.empty_node_map(graph);
Point pref = Point(-1, 0, 1);
int path = shortest_path_lengths(graph, pref);
PathColorFn pcf = PathColorFn(path);
viewer.add_nodes(graph.node_begin(), graph.node_end(), pcf, node_map);
// Test the PositionColorFn, the color is presented according to the nodes' x coordinats.
//PositionColorFn pocf = PositionColorFn();
//viewer.add_nodes(graph.node_begin(), graph.node_end(), pocf, node_map);
viewer.add_edges(graph.edge_begin(), graph.edge_end(), node_map);
viewer.center_view();
return 0;
}
int main(int argc, char* argv[])
{
// Check arguments
if (argc < 2) {
std::cerr << "Usage: " << argv[0] << " NODES_FILE TETS_FILE\n";
exit(1);
}
// Construct a Graph
typedef Graph<int> GraphType;
GraphType graph;
std::vector<GraphType::node_type> nodes;
// Create a nodes_file from the first input argument
std::ifstream nodes_file(argv[1]);
// Interprit each line of the nodes_file as a 3D Point and add to the Graph
Point p;
while (CS207::getline_parsed(nodes_file, p))
nodes.push_back(graph.add_node(p));
// Create a tets_file from the second input argument
std::ifstream tets_file(argv[2]);
// Interprit each line of the tets_file as four ints which refer to nodes
std::array<int,4> t;
while (CS207::getline_parsed(tets_file, t))
for (unsigned i = 1; i < t.size(); ++i)
for (unsigned j = 0; j < i; ++j)
graph.add_edge(nodes[t[i]], nodes[t[j]]);
// Print out the stats
std::cout << graph.num_nodes() << " " << graph.num_edges() << std::endl;
// Launch the SDLViewer
CS207::SDLViewer viewer;
viewer.launch();
// Use shortest_path_lengths to set the node values to the path lengths
// Construct a Color functor and view with the SDLViewer
auto node_map = viewer.empty_node_map(graph);
int distance = shortest_path_lengths(graph, {-1,0,1});
viewer.add_nodes(graph.node_begin(), graph.node_end(), Color(distance), node_map);
viewer.add_edges(graph.edge_begin(), graph.edge_end(), node_map);
return 0;
}
int LasySnapping::runMaxflow()
{
const float INFINNITE_MAX = 1e10;
int indexPt = 0;
for(int h = 0; h < image->height; h ++){
unsigned char* p = (unsigned char*)image->imageData + h *image->widthStep;
for(int w = 0; w < image->width; w ++){
// calculate energe E1
float e1[2]={0};
if(isPtInVector(cvPoint(w,h),forePts)){
e1[0] =0;
e1[1] = INFINNITE_MAX;
}else if(isPtInVector(cvPoint(w,h),backPts)){
e1[0] = INFINNITE_MAX;
e1[1] = 0;
}else {
getE1(p,e1);
}
// add node
graph->add_node();
graph->add_tweights(indexPt, e1[0],e1[1]);
// add edge, 4-connect
if(h > 0 && w > 0){
float e2 = getE2(p,p-3);
graph->add_edge(indexPt,indexPt-1,e2,e2);
e2 = getE2(p,p-image->widthStep);
graph->add_edge(indexPt,indexPt-image->width,e2,e2);
}
p+= 3;
indexPt ++;
}
}
return graph->maxflow();
}
void Preprocess::GraphCutBinarize(bool shiftDown, int xyDivs)
{
float alpha_B, alpha_F, P_I;
MinErrorThresholding(&alpha_B, &alpha_F, &P_I, false);
//Some times you need to shift the means down.
if(shiftDown)
{
alpha_F = std::max((alpha_F)/2,((alpha_B)+(alpha_F))/2);
alpha_B = (alpha_B)/1.5;
}
//Compute the poisson probs
double F_H[256], B_H[256];
for(int i=0; i<256; i++)
{
if( i >= alpha_F )
F_H[i] = (1-P_I)*ComputePoissonProb((int)alpha_F,alpha_F);
else
F_H[i] = (1-P_I)*ComputePoissonProb(i,alpha_F);
if( i <= alpha_B )
B_H[i] = P_I*ComputePoissonProb(int(alpha_B),alpha_B);
else
B_H[i] = P_I*ComputePoissonProb(i,alpha_B);
}
ImageType3D::SizeType size = myImg->GetLargestPossibleRegion().GetSize();
for(int i=0; i<(int)size[0]; i+=(int)size[0]/xyDivs)
{
for(int j=0; j<(int)size[1]; j+=(int)size[1]/xyDivs)
{
ImageType3D::IndexType rIndexStart;
rIndexStart[0] = i;
rIndexStart[1] = j;
rIndexStart[2] = 0;
ImageType3D::SizeType rIndexEnd; //Plus 1
rIndexEnd[0] = (int)(i + size[0]/xyDivs + 1);
rIndexEnd[1] = (int)(j + size[1]/xyDivs + 1);
if(rIndexEnd[0] > size[0])
rIndexEnd[0] = size[0];
if(rIndexEnd[1] > size[1])
rIndexEnd[1] = size[1];
ImageType3D::SizeType rSize;
rSize[0] = rIndexEnd[0] - rIndexStart[0];
rSize[1] = rIndexEnd[1] - rIndexStart[1];
rSize[2] = size[2];
//long num_nodes = size[0]*size[1]*size[2];
//long num_edges = 3*(size[0]-1)*(size[1]-1)*(size[2]-1);
long num_nodes = rSize[0]*rSize[1]*rSize[2];
long num_edges = 3*(rSize[0]-1)*(rSize[1]-1)*(rSize[2]-1);
//Construct a graph:
typedef Graph_B<short,short,short> GraphType;
GraphType * g = new GraphType(/*estimated # of nodes*/ num_nodes, /*estimated # of edges*/ num_edges);
ImageType3D::RegionType rRegion;
rRegion.SetIndex(rIndexStart);
rRegion.SetSize(rSize);
typedef itk::ImageRegionIteratorWithIndex< ImageType3D > IteratorType;
IteratorType it( myImg, rRegion );
//ADD NODES:
for( it.GoToBegin(); !it.IsAtEnd(); ++it )
{
int intst = (int)it.Get();
ImageType3D::IndexType index = it.GetIndex();
//int curr_node = (index[2]*size[1]*size[0])+(index[1]*size[0])+index[0];
int curr_node = ((index[2]-rIndexStart[2])*rSize[1]*rSize[0])+((index[1]-rIndexStart[1])*rSize[0])+(index[0]-rIndexStart[0]);
//First Add Nodes
double Df = -log( F_H[intst] ); //it was multiplied by .5
if(Df > 1000.0)
Df = 1000;
double Db = -log( B_H[intst] );
if(Db > 1000.0)
Db=1000;
g->add_node();
g->add_tweights( curr_node, /* capacities */ Df, Db );
}
//ADD EDGES:
double sig = 30.0; //30.0;
double w = 10.0; //10.0;
for( it.GoToBegin(); !it.IsAtEnd(); ++it )
{
ImageType3D::IndexType index = it.GetIndex();
//int curr_node = (index[2]*size[1]*size[0])+(index[1]*size[0])+index[0];
int curr_node = ((index[2]-rIndexStart[2])*rSize[1]*rSize[0])+((index[1]-rIndexStart[1])*rSize[0])+(index[0]-rIndexStart[0]);
int intst = (int)it.Get();
for(int i=0; i<3; ++i)
{
ImageType3D::IndexType index2 = index;
index2[i]++;
if((int)index2[i] < (int)rSize[i])
{
//int nbr_node = (index2[2]*size[1]*size[0])+(index2[1]*size[0])+index2[0];
int nbr_node = ((index2[2]-rIndexStart[2])*rSize[1]*rSize[0])+((index2[1]-rIndexStart[1])*rSize[0])+(index2[0]-rIndexStart[0]);
int intst2 = myImg->GetPixel(index2);
double Dn = w*exp(-pow((double)intst-intst2,2)/(2*pow(sig,2)));
g -> add_edge( curr_node, nbr_node, /* capacities */ Dn, Dn );
}
}
}
//Compute the maximum flow:
g->maxflow(); //Alex DO NOT REMOVE
//Now Binarize
for( it.GoToBegin(); !it.IsAtEnd(); ++it )
{
ImageType3D::IndexType index = it.GetIndex();
//int curr_node = (index[2]*size[1]*size[0])+(index[1]*size[0])+index[0];
int curr_node = ((index[2]-rIndexStart[2])*rSize[1]*rSize[0])+((index[1]-rIndexStart[1])*rSize[0])+(index[0]-rIndexStart[0]);
if( g->what_segment(curr_node) == GraphType::SOURCE )
it.Set(0);
else
it.Set(255);
}
delete g;
}//end for j
}//end for i
}
void MGraphCut::multipleGraphCutFeatureExtention(MGraph& gph, std::vector<std::vector<unsigned> >& gcFeatures, std::vector<unsigned>& vlb, int& lableId, unsigned int limitCutTimes, double myPolarizedThreshold)
{
//init subgraph;
vlb.clear(); vlb.resize(gph.vNum);
//std::vector<int> edgeLable(myMesh->getEdges().size());
std::list<MGraphCut::SubGraph> subgraphs;
std::vector<MGraphCut::SGIter> sgIters;
lableId = 0;
std::vector<bool> visitedVer(gph.vNum, false);
std::vector<bool> visitedEdge(gph.eNum, false);
for (int i = 0; i < (int)gph.vs.size(); i++){
if (visitedVer[i] == true) continue;
MGraphCut::SubGraph tsg;
std::vector<unsigned> &tvers = tsg.vers;
std::vector<unsigned> &tedges = tsg.edges;
//tsg.features.reserve(gcFeatures.size());
std::vector<MGraph::Vertex> frontVer(1, gph.vs[i]);
while (!frontVer.empty()){
MGraph::Vertex fv = frontVer.back(); frontVer.pop_back();
vlb[fv.id] = lableId;
tvers.push_back(fv.id);
std::list<int>::iterator vit = fv.vadjs.begin();
std::list<int>::iterator eit = fv.eadjs.begin();
for (; vit != fv.vadjs.end(); vit++, eit++){
unsigned teid = *eit;
if (gph.es[teid].isCut){
//edgeLable[teid]=-1;
continue;
}
if (visitedEdge[teid] == true) continue;
visitedEdge[teid] = true;
//edgeLable[teid] = lableId;
tedges.push_back(teid);
int adjv = *vit;
if (visitedVer[adjv] == true) continue;
visitedVer[adjv] = true;
frontVer.push_back(gph.vs[adjv]);
}
}
lableId++;
subgraphs.push_back(tsg);
}
for (MGraphCut::SGIter s_it = subgraphs.begin(); s_it != subgraphs.end(); s_it++)
sgIters.push_back(s_it);
std::vector<std::vector<unsigned> > sgFeature;
for (int i = 0; i < (int)gcFeatures.size(); i++){
std::set<unsigned> tlab;
for (int j = 0; j < (int)gcFeatures[i].size(); j++){
if (vlb[gph.es[gcFeatures[i][j]].n1] != vlb[gph.es[gcFeatures[i][j]].n2]){
gcFeatures[i].erase(gcFeatures[i].begin() + j); j--;
continue;
}
tlab.insert(vlb[gph.es[gcFeatures[i][j]].n1]);
}
if (gcFeatures[i].empty()){
gcFeatures.erase(gcFeatures.begin() + i); i--;
}
else{
std::vector<unsigned> tfs;
for (std::set<unsigned>::iterator sit = tlab.begin(); sit != tlab.end(); ++sit)
tfs.push_back(*sit);
sgFeature.push_back(tfs);
}
}
for (unsigned i = 0; i < sgFeature.size(); i++){
for (unsigned j = 0; j < sgFeature[i].size(); j++){
sgIters[sgFeature[i][j]]->features.push_back(i);
}
}
//feature cost and reward;
std::vector<double> gcFeatureAward(gcFeatures.size(), 0);
for (unsigned i = 0; i < gcFeatures.size(); i++){
for (unsigned j = 0; j < gcFeatures[i].size(); j++){
gcFeatureAward[i] += gph.es[gcFeatures[i][j]].award;
}
}
std::cout << "************* graph partition *************" << endl;
std::cout << "feature number:" << gcFeatures.size() << endl;
std::cout << "feature extension param:" << myPolarizedThreshold << endl;
clock_t tstr = clock();
unsigned count = 0; //count how many "graph-cuts".
//
std::vector<int> vertexMap(vlb.size(), -1);
// 0 means a source and 1 means a sink vertex for current round; 2 means a vertex connected with a feature edge
std::vector<int> featureFlagMap = vertexMap;
// Initialize the eigen solver for linear system
Eigen::SparseLU< Eigen::SparseMatrix<double, Eigen::ColMajor>, Eigen::COLAMDOrdering<int> > solver;
//iteratively graph cut
while (count < limitCutTimes)
{
//std::cout << "cut " << count << " times" << endl;
unsigned fid = std::max_element(gcFeatureAward.begin(), gcFeatureAward.end()) - gcFeatureAward.begin();
if (gcFeatureAward[fid] <= -sm_largeDouble) break;
gcFeatureAward[fid] = -sm_largeDouble;
std::vector<unsigned> features = gcFeatures[fid];
std::vector<unsigned> sgfs = sgFeature[fid];
sgFeature[fid].clear();
while (!sgfs.empty())
{
unsigned sgl = sgfs.back(); sgfs.pop_back();
SGIter s_it = sgIters[sgl];
if (s_it->edges.empty())
continue;
//make graph
for (int i = 0; i < (int)s_it->vers.size(); i++){
vertexMap[s_it->vers[i]] = i;
}
GraphType *g = new GraphType(s_it->vers.size(), s_it->edges.size());
g->add_node(s_it->vers.size());
for (int i = 0; i < (int)s_it->edges.size(); i++){
if (gph.es[s_it->edges[i]].isCut) continue;
g->add_edge(vertexMap[gph.es[s_it->edges[i]].n1], vertexMap[gph.es[s_it->edges[i]].n2], gph.es[s_it->edges[i]].w, gph.es[s_it->edges[i]].w);
}
// Do potential feature grouping
FeatureEdgeExtention(gph, gcFeatures, features, vertexMap, featureFlagMap, s_it, solver, g, myPolarizedThreshold);
double flow = g->maxflow();
count++;
//update cut edge;
for (int i = 0; i < (int)s_it->edges.size(); i++){
if (g->what_segment(vertexMap[gph.es[s_it->edges[i]].n1]) != g->what_segment(vertexMap[gph.es[s_it->edges[i]].n2]))
gph.es[s_it->edges[i]].isCut = true;
}
for (int i = 0; i < (int)s_it->vers.size(); i++)
{
vertexMap[s_it->vers[i]] = -1;
featureFlagMap[s_it->vers[i]] = -1;
}
//update subgraph;
std::vector<unsigned> newLabel(1, sgl);
std::vector<MGraphCut::SubGraph> newSG(1);
for (unsigned i = 0; i < s_it->vers.size(); i++)
visitedVer[s_it->vers[i]] = false;
for (unsigned i = 0; i < s_it->edges.size(); i++)
visitedEdge[s_it->edges[i]] = false;
unsigned nlid = 0;
for (unsigned i = 0; i < s_it->vers.size(); i++){
if (visitedVer[s_it->vers[i]] == true) continue;
std::vector<unsigned> &tvers = newSG[nlid].vers;
std::vector<unsigned> &tedges = newSG[nlid].edges;
newSG[nlid].features.reserve(gcFeatures.size());
std::vector<MGraph::Vertex> frontVer(1, gph.vs[s_it->vers[i]]);
while (!frontVer.empty()){
MGraph::Vertex fv = frontVer.back(); frontVer.pop_back();
vlb[fv.id] = newLabel[nlid];
tvers.push_back(fv.id);
// for(unsigned i=0;i<fv.vadjs.size();i++){
// unsigned teid=fv.eadjs[i];
std::list<int>::iterator vit = fv.vadjs.begin();
std::list<int>::iterator eit = fv.eadjs.begin();
for (; vit != fv.vadjs.end(); vit++, eit++){
unsigned teid = *eit;
if (gph.es[teid].isCut){
//edgeLable[teid]=-1;
continue;
}
if (visitedEdge[teid] == true) continue;
visitedEdge[teid] = true;
//edgeLable[teid] = newLabel[nlid];
tedges.push_back(teid);
// int adjv=fv.vadjs[i];
int adjv = *vit;
if (visitedVer[adjv] == true) continue;
visitedVer[adjv] = true;
frontVer.push_back(gph.vs[adjv]);
}
}
nlid++;
newLabel.push_back(lableId);
lableId++;
newSG.push_back(SubGraph());
}
newLabel.pop_back();
newSG.pop_back();
lableId--;
for (int i = 0; i < (int)s_it->features.size(); i++){
if (s_it->features[i] == fid) continue;
if (sgFeature[s_it->features[i]].empty()) continue;
unsigned lpos = std::find(sgFeature[s_it->features[i]].begin(), sgFeature[s_it->features[i]].end(), sgl) - sgFeature[s_it->features[i]].begin();
if (lpos < sgFeature[s_it->features[i]].size())
sgFeature[s_it->features[i]].erase(sgFeature[s_it->features[i]].begin() + lpos);
std::set<unsigned> tlab;
for (int j = 0; j < (int)gcFeatures[s_it->features[i]].size(); j++){
if (vlb[gph.es[gcFeatures[s_it->features[i]][j]].n1] != vlb[gph.es[gcFeatures[s_it->features[i]][j]].n2]){
gcFeatures[s_it->features[i]].erase(gcFeatures[s_it->features[i]].begin() + j); j--;
continue;
}
//if(vlb[ets[gcFeatures[s_it->features[i]][j]]->vertex_iter(0)->id()] == newLabel[0] || vlb[ets[gcFeatures[s_it->features[i]][j]]->vertex_iter(0)->id()] == newLabel[1])
tlab.insert(vlb[gph.es[gcFeatures[s_it->features[i]][j]].n1]);
}
if (!tlab.empty()){
for (std::set<unsigned>::iterator sit = tlab.begin(); sit != tlab.end(); ++sit){
for (unsigned j = 0; j < newLabel.size(); j++){
if (*sit == newLabel[j]){
newSG[j].features.push_back(s_it->features[i]);
sgFeature[s_it->features[i]].push_back(newLabel[j]);
break;
}
}
}
}
else{
}
}
s_it->vers = newSG[0].vers;
s_it->edges = newSG[0].edges;
s_it->features = newSG[0].features;
for (unsigned i = 1; i < newSG.size(); i++){
subgraphs.push_back(newSG[i]);
s_it = subgraphs.end(); s_it--;
sgIters.push_back(s_it);
}
delete g;
}
}
std::cout << endl << "run graph cut " << count << " times";
clock_t totalTime = clock() - tstr;
std::cout << " and uses " << totalTime / 1000 << "sec" << totalTime % 1000 << "mm" << endl;
}
void MGraphCut::multipleGraphCut(MGraph& gph, std::vector<std::vector<unsigned> >& gcFeatures, std::vector<unsigned>& vlb, int& labelId, unsigned int limitCutTimes)
{
//init subgraph;
vlb.clear();vlb.resize(gph.vNum);
//std::vector<int> edgeLabel(myMesh->getEdges().size());
std::list<MGraphCut::SubGraph> subgraphs;
std::vector<MGraphCut::SGIter> sgIters;
labelId=0;
std::vector<bool> visitedVer(gph.vNum,false);
std::vector<bool> visitedEdge(gph.eNum,false);
for (int i = 0; i<(int)gph.vs.size(); i++){
if(visitedVer[i]==true) continue;
MGraphCut::SubGraph tsg;
std::vector<unsigned> &tvers = tsg.vers;
std::vector<unsigned> &tedges = tsg.edges;
//tsg.features.reserve(gcFeatures.size());
std::vector<MGraph::Vertex> frontVer(1,gph.vs[i]);
while(!frontVer.empty()){
MGraph::Vertex fv = frontVer.back(); frontVer.pop_back();
vlb[fv.id]=labelId;
tvers.push_back(fv.id);
std::list<int>::iterator vit = fv.vadjs.begin();
std::list<int>::iterator eit = fv.eadjs.begin();
for(;vit != fv.vadjs.end();vit++,eit++){
unsigned teid=*eit;
if(gph.es[teid].isCut){
//edgeLabel[teid]=-1;
continue;
}
if(visitedEdge[teid]==true) continue;
visitedEdge[teid]=true;
//edgeLabel[teid] = labelId;
tedges.push_back(teid);
int adjv=*vit;
if(visitedVer[adjv]==true) continue;
visitedVer[adjv] = true;
frontVer.push_back(gph.vs[adjv]);
}
}
labelId++;
subgraphs.push_back(tsg);
}
for(MGraphCut::SGIter s_it=subgraphs.begin();s_it!=subgraphs.end();s_it++)
sgIters.push_back(s_it);
std::vector<std::vector<unsigned> > sgFeature;
for (int i = 0; i<(int)gcFeatures.size(); i++){
std::set<unsigned> tlab;
for (int j = 0; j<(int)gcFeatures[i].size(); j++){
if(vlb[gph.es[gcFeatures[i][j]].n1] != vlb[gph.es[gcFeatures[i][j]].n2]){
gcFeatures[i].erase(gcFeatures[i].begin()+j); j--;
continue;
}
tlab.insert(vlb[gph.es[gcFeatures[i][j]].n1]);
}
if(gcFeatures[i].empty()){
gcFeatures.erase(gcFeatures.begin()+i); i--;
}
else{
std::vector<unsigned> tfs;
for(std::set<unsigned>::iterator sit=tlab.begin(); sit!=tlab.end(); ++sit)
tfs.push_back(*sit);
sgFeature.push_back(tfs);
}
}
for(unsigned i = 0;i<sgFeature.size();i++){
for(unsigned j=0;j<sgFeature[i].size();j++){
sgIters[sgFeature[i][j]]->features.push_back(i);
}
}
//feature cost and reward;
std::vector<double> gcFeatureAward(gcFeatures.size(),0); //assume
// if(gcFeaturePriority==0){//min cost
// for(unsigned i=0;i<gcFeatures.size();i++){
// for(unsigned j=0;j<gcFeatures[i].size();j++){
// gcFeatureAward[i] -= ets[gcFeatures[i][j]]->cost();
// }
// }
// }
// else if(gcFeaturePriority==1){//max award
for(unsigned i=0;i<gcFeatures.size();i++){
for(unsigned j=0;j<gcFeatures[i].size();j++){
gcFeatureAward[i]+= gph.es[gcFeatures[i][j]].award;
}
}
// }
// else if(gcFeaturePriority==2){//min cost-award
// for(unsigned i=0;i<gcFeatures.size();i++){
// for(unsigned j=0;j<gcFeatures[i].size();j++){
// gcFeatureAward[i] -=edgeWeight[gcFeatures[i][j]];
// }
// }
// }
cout<<"************* graph partition *************"<<endl;
cout<<"feature number:"<<gcFeatures.size()<<endl;
clock_t tstr = clock();
//run graph cut
//important datas: vertexLabel, edgeLabel, subgraphs, labelId, sgFeatures;
unsigned count=0; //count how many "graph-cuts".
std::vector<int> vertexMap(vlb.size(),-1);
// std::vector<bool> visitedVer(gph.vNum,false);
// std::vector<bool> visitedEdge(gph.eNum,false);
while (count<limitCutTimes){//iteratively graph cut
// if(count%10 == 0) cout<<"cut "<<count<<" times"<<endl;
unsigned fid = std::max_element(gcFeatureAward.begin(),gcFeatureAward.end()) - gcFeatureAward.begin();
if (gcFeatureAward[fid] <= -sm_largeDouble) break;
gcFeatureAward[fid] = -sm_largeDouble;
std::vector<unsigned> features = gcFeatures[fid];
std::vector<unsigned> sgfs = sgFeature[fid];
sgFeature[fid].clear();
while(!sgfs.empty()){
unsigned sgl = sgfs.back(); sgfs.pop_back();
SGIter s_it = sgIters[sgl];
if(s_it->edges.empty())
continue;
//make graph
for (int i = 0; i<(int)s_it->vers.size(); i++){
vertexMap[s_it->vers[i]]=i;
}
GraphType *g = new GraphType(s_it->vers.size(),s_it->edges.size());
g->add_node(s_it->vers.size());
for (int i = 0; i<(int)s_it->edges.size(); i++){
if(gph.es[s_it->edges[i]].isCut) continue;
g->add_edge( vertexMap[ gph.es[s_it->edges[i]].n1], vertexMap[ gph.es[s_it->edges[i]].n2] , gph.es[s_it->edges[i]].w,gph.es[s_it->edges[i]].w );
}
for(unsigned i=0;i<features.size();i++){//add source & sink;
int vsrc = gph.es[features[i]].n1;
int vsin = gph.es[features[i]].n2;
if(!gph.es[features[i]].ort){
vsrc = gph.es[features[i]].n2;
vsin = gph.es[features[i]].n1;
}
vsrc = vertexMap[vsrc];
vsin = vertexMap[vsin];
if(vsrc == -1 || vsin == -1) continue;
g->add_tweights(vsrc, sm_largeDouble, 0);
g->add_tweights(vsin, 0, sm_largeDouble);
}
double flow = g->maxflow();
count++;
//update cut edge;
for (int i = 0; i<(int)s_it->edges.size(); i++){
if (g->what_segment(vertexMap[gph.es[s_it->edges[i]].n1]) != g->what_segment(vertexMap[gph.es[s_it->edges[i]].n2]))
gph.es[s_it->edges[i]].isCut = true;
}
for (int i = 0; i<(int)s_it->vers.size(); i++){
vertexMap[s_it->vers[i]]=-1;
}
//update subgraph;
std::vector<unsigned> newLabel(1,sgl);
std::vector<MGraphCut::SubGraph> newSG(1);
for(unsigned i=0;i<s_it->vers.size();i++)
visitedVer[s_it->vers[i]]=false;
for(unsigned i=0;i<s_it->edges.size();i++)
visitedEdge[s_it->edges[i]]=false;
unsigned nlid=0;
for(unsigned i=0;i<s_it->vers.size();i++){
if(visitedVer[s_it->vers[i]]==true) continue;
std::vector<unsigned> &tvers = newSG[nlid].vers;
std::vector<unsigned> &tedges = newSG[nlid].edges;
newSG[nlid].features.reserve(gcFeatures.size());
std::vector<MGraph::Vertex> frontVer(1,gph.vs[s_it->vers[i]]);
while(!frontVer.empty()){
MGraph::Vertex fv = frontVer.back(); frontVer.pop_back();
vlb[fv.id]=newLabel[nlid];
tvers.push_back(fv.id);
// for(unsigned i=0;i<fv.vadjs.size();i++){
// unsigned teid=fv.eadjs[i];
std::list<int>::iterator vit = fv.vadjs.begin();
std::list<int>::iterator eit = fv.eadjs.begin();
for(;vit != fv.vadjs.end();vit++,eit++){
unsigned teid=*eit;
if(gph.es[teid].isCut){
//edgeLabel[teid]=-1;
continue;
}
if(visitedEdge[teid]==true) continue;
visitedEdge[teid]=true;
//edgeLabel[teid] = newLabel[nlid];
tedges.push_back(teid);
// int adjv=fv.vadjs[i];
int adjv=*vit;
if(visitedVer[adjv]==true) continue;
visitedVer[adjv] = true;
frontVer.push_back(gph.vs[adjv]);
}
}
nlid++;
newLabel.push_back(labelId);
labelId++;
newSG.push_back(SubGraph());
}
newLabel.pop_back();
newSG.pop_back();
labelId--;
for (int i = 0; i<(int)s_it->features.size(); i++){
if(s_it->features[i] == fid) continue;
if(sgFeature[s_it->features[i]].empty()) continue;
unsigned lpos = std::find(sgFeature[s_it->features[i]].begin(),sgFeature[s_it->features[i]].end(),sgl) - sgFeature[s_it->features[i]].begin();
if(lpos < sgFeature[s_it->features[i]].size())
sgFeature[s_it->features[i]].erase(sgFeature[s_it->features[i]].begin()+lpos);
std::set<unsigned> tlab;
for (int j = 0; j<(int)gcFeatures[s_it->features[i]].size(); j++){
if(vlb[gph.es[gcFeatures[s_it->features[i]][j]].n1] != vlb[gph.es[gcFeatures[s_it->features[i]][j]].n2]){
gcFeatures[s_it->features[i]].erase(gcFeatures[s_it->features[i]].begin()+j); j--;
continue;
}
//if(vlb[ets[gcFeatures[s_it->features[i]][j]]->vertex_iter(0)->id()] == newLabel[0] || vlb[ets[gcFeatures[s_it->features[i]][j]]->vertex_iter(0)->id()] == newLabel[1])
tlab.insert(vlb[gph.es[gcFeatures[s_it->features[i]][j]].n1]);
}
if(!tlab.empty()){
for(std::set<unsigned>::iterator sit=tlab.begin(); sit!=tlab.end(); ++sit){
for(unsigned j=0;j<newLabel.size();j++){
if(*sit==newLabel[j]){
newSG[j].features.push_back(s_it->features[i]);
sgFeature[s_it->features[i]].push_back(newLabel[j]);
break;
}
}
}
}
else{
}
}
s_it->vers = newSG[0].vers;
s_it->edges = newSG[0].edges;
s_it->features = newSG[0].features;
for(unsigned i=1;i<newSG.size();i++){
subgraphs.push_back(newSG[i]);
s_it = subgraphs.end(); s_it--;
sgIters.push_back(s_it);
}
delete g;
}
}
cout<<endl<<"run graph cut "<<count<<" times";
clock_t totalTime=clock()-tstr;
cout<<" and uses "<<totalTime/1000<<"sec"<<totalTime%1000<<"mm"<<endl;
}
void mexFunction(int nlhs, /* number of expected outputs */
mxArray *plhs[], /* mxArray output pointer array */
int nrhs, /* number of inputs */
const mxArray *prhs[] /* mxArray input pointer array */)
{
unsigned int nodes;
unsigned int pairs;
bool *labels;
unsigned int *source;
unsigned int *destination;
float *pairValue;
float *unaryValue;
float *flow;
mxArray *sourceMxArray;
mxArray *destinationMxArray;
mxArray *pairValueMxArray;
/** Input validation */
if( nrhs != 2 )
mexErrMsgTxt( USAGE_NOTIFICATION );
const mxArray *A = prhs[ 0 ];
const mxArray *T = prhs[ 1 ];
if( !mxIsStruct( A ) )
{
mexErrMsgTxt( USAGE_NOTIFICATION );
}
else
{
sourceMxArray = mxGetField( A, 0, "source" );
destinationMxArray = mxGetField( A, 0, "destination" );
pairValueMxArray = mxGetField( A, 0, "value" );
if( mxGetClassID( sourceMxArray ) != mxUINT32_CLASS ||
mxGetClassID( destinationMxArray ) != mxUINT32_CLASS ||
mxGetClassID( pairValueMxArray ) != mxSINGLE_CLASS )
{
mexErrMsgTxt( USAGE_NOTIFICATION );
}
if( mxIsComplex( sourceMxArray ) ||
mxIsComplex( destinationMxArray ) ||
mxIsComplex( pairValueMxArray ) )
{
mexErrMsgTxt( USAGE_NOTIFICATION );
}
pairs = mxGetNumberOfElements( sourceMxArray );
if( pairs != mxGetNumberOfElements( destinationMxArray ) ||
pairs != mxGetNumberOfElements( pairValueMxArray ) )
{
mexErrMsgTxt( USAGE_NOTIFICATION );
}
}
if( mxGetClassID( T ) != mxSINGLE_CLASS )
{
mexErrMsgTxt( USAGE_NOTIFICATION );
}
else
{
if( mxIsComplex( T ) )
mexErrMsgTxt( USAGE_NOTIFICATION );
nodes = mxGetM( T );
if( mxGetN( T ) != 2 )
mexErrMsgTxt( USAGE_NOTIFICATION );
}
/** End of input validation */
source = ( unsigned int * )mxGetData( sourceMxArray );
destination = ( unsigned int * )mxGetData( destinationMxArray );
pairValue = ( float * )mxGetData( pairValueMxArray );
unaryValue = ( float * )mxGetData( T );
typedef Graph< float, float, float > GraphType;
GraphType *graph = new GraphType( nodes, pairs );
graph->add_node( nodes );
/** Add pairwise potentials */
for( int edge = 0; edge < pairs; edge++ )
graph->add_edge( source[ edge ], destination[ edge ], pairValue[ edge ], pairValue[ edge ] );
for( int node = 0; node < nodes; node++ )
graph->add_tweights( node, unaryValue[ node ], unaryValue[ node + nodes ] );
/** Create outputs */
plhs[ 0 ] = mxCreateNumericMatrix( 1, 1, mxSINGLE_CLASS, mxREAL );
plhs[ 1 ] = mxCreateLogicalMatrix( nodes, 1 );
flow = ( float * )mxGetData( plhs[ 0 ] );
labels = ( bool * )mxGetData( plhs[ 1 ] );
*flow = graph->maxflow();
for( int node = 0; node < nodes; node++ )
labels[ node ] = graph->what_segment( node );
delete graph;
}
void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[])
{
//printf("1\n");
//declare variables
mxArray *D, *PairW, *tU, *kIn, *alpha;
const mwSize *dimsPairW, *dimsD;
double *alphaPtr, *DPtr, *PairWPtr, *tUPtr, *kInPtr;
int dimxPairW, dimyPairW, dimzPairW, dimxD, dimyD;
int i,j;
//associate inputs
//printf("2\n");
D = mxDuplicateArray(prhs[0]);
PairW = mxDuplicateArray(prhs[1]);
//tU = mxDuplicateArray(prhs[2]);
//kIn = mxDuplicateArray(prhs[3]);
//figure out dimensions
//printf("3\n");
dimsPairW = mxGetDimensions(prhs[1]);
dimyPairW = (int)dimsPairW[0]; dimxPairW = (int)dimsPairW[1]; dimzPairW = (int)dimsPairW[2];
dimsD = mxGetDimensions(prhs[0]);
dimyD = (int)dimsD[0]; dimxD = (int)dimsD[1];
//printf("4\n");
//associate outputs
alpha = plhs[0] = mxCreateDoubleMatrix(1,dimxPairW,mxREAL);
//printf("5\n");
//associate pointers
alphaPtr = mxGetPr(alpha);
DPtr = mxGetPr(D);
PairWPtr = mxGetPr(PairW);
//tUPtr = mxGetPr(tU);
//kInPtr = mxGetPr(kIn);
//printf("6\n");
typedef Graph<double,double,double> GraphType;
int numNodes=dimxPairW;
GraphType *g = new GraphType(/*estimated # of nodes*/ numNodes, /*estimated # of edges*/ numNodes*6);
g->add_node(numNodes);
// loop through pixels
/*
for(i=0;i<dimxPairW;i++)
{
//mexPrintf("D[0][%d] = %f\n",i,DPtr[i*2]);
//mexPrintf("D[1][%d] = %f\n",i,DPtr[i*2+1]);
for(j=0;j<dimyPairW;j++)
{
int xy = j+i*dimyPairW;
int matSize = dimxPairW*dimyPairW;
//mexPrintf("V[%d][%d][0] = %f\n",j,i,PairWPtr[xy]);
mexPrintf("V[%d][%d][1] = %f\n",j,i,PairWPtr[matSize + xy - 1]);
}
}
*/
for (i=0;i<dimxPairW;i++)
{
//if (i % 10000 == 0)
//printf("7: %d/%d\n", i, dimxPairW);
//if (((int)tUPtr[i])==1) {
//printf("7: %d/%d\n", i, dimxPairW);
g->add_tweights(i,DPtr[2*i+1],DPtr[2*i]);
//}
/*else {
//printf("7: %d/%d\n", i, dimxPairW);
g->add_tweights(i,0,kInPtr[0]);
}*/
for (j=0;j<dimyPairW;j++)
{
int xy = j+i*dimyPairW;
int matSize = dimxPairW*dimyPairW;
// printf("8: %d/%d\n", j, dimyPairW);
if ((int)PairWPtr[matSize + xy]-1<=0) {
//printf("8-2\n");
continue;
}
else {
// printf("8-3: i=%d, j=%d, dimyPairW=%d, dimxPairW=%d, dimzPairW=%d, dimxD=%d, dimyD=%d, matSize=%d, xy=%d ---- ", i, j, dimyPairW, dimxPairW, dimzPairW, dimxD, dimyD, matSize, xy);
// printf("8-3-2: PairWPtr1=%d, PairWPtr2=%f\n", (int)PairWPtr[matSize + xy]-1, PairWPtr[xy]);
g->add_edge(i,(int)PairWPtr[matSize + xy]-1,PairWPtr[xy],PairWPtr[xy]);
}
}
}
double flow = g->maxflow();
printf("Flow = %f\n", flow);
//printf("9\n");
for (i=0;i<dimxPairW;i++)
{
//printf("10: %d/%d\n", i, dimxPairW);
if (g->what_segment(i) == GraphType::SOURCE) alphaPtr[i]=1;
else alphaPtr[i]=0;
}
delete g;
return;
}
void mexFunction(
int nlhs,
mxArray *plhs[],
int nrhs,
const mxArray *prhs[]
)
{
/* Check for proper number of arguments */
if (nrhs != 4) {
mexErrMsgIdAndTxt("MATLAB:mexmaxflow:nargin",
"MEXCPP requires four input arguments.");
} else if (nlhs != 1 && nlhs != 2) {
mexErrMsgIdAndTxt("MATLAB:mexmaxflow:nargout",
"MEXCPP requires one output argument.");
}
//parse out arguments
double *backWeights = (double *) mxGetPr(prhs[0]);
double *foreWeights = (double *) mxGetPr(prhs[1]);
double *smoothIndices = (double *) mxGetPr(prhs[2]);
double *smoothWeights = (double *) mxGetPr(prhs[3]);
size_t numNodes = mxGetNumberOfElements(prhs[0]);
size_t numDirections = mxGetN(prhs[2]);
//Error checking
if (numNodes != mxGetNumberOfElements(prhs[1])) mexErrMsgIdAndTxt("MATLAB:mexmaxflow:argin", "Weight arrays must be same length");
if (numNodes != mxGetM(prhs[2])) mexErrMsgIdAndTxt("MATLAB:mexmaxflow:argin", "Number of rows for edge matrix does not match number of nodes");
if (mxGetN(prhs[2]) != mxGetN(prhs[3]) || mxGetM(prhs[2]) != mxGetM(prhs[3])) mexErrMsgIdAndTxt("MATLAB:mexmaxflow:argin", "Edge weights matrix does not match edge indices matrix");
//Create and fill graph
typedef Graph<double, double, double> GraphType;
GraphType *g = new GraphType(((int)numNodes),((int)(numNodes*numDirections)));
g->add_node(((int)numNodes));
//Background is source, foreground is sink
for (size_t i=0; i<numNodes; i++)
{
g->add_tweights(i, backWeights[i], foreWeights[i]);
for (size_t j=0; j<numDirections; j++)
{
//mexPrintf("Value1 = %g\n", smoothIndices[numNodes*j + i]);
int edgeIndex = (int)(smoothIndices[numNodes*j + i]-1);
double edgeWeight = smoothWeights[numNodes*j + i];
if (edgeIndex < 0) continue;
else if (edgeIndex >= numNodes) mexErrMsgIdAndTxt("MATLAB:mexmaxflow:argin", "Illegal edge index");
else if (edgeIndex >= i) continue;
g->add_edge(edgeIndex, i, edgeWeight, edgeWeight);
}
}
//Calc flow
double energy = g->maxflow();
plhs[0] = mxCreateNumericMatrix(numNodes, 1, mxDOUBLE_CLASS, mxREAL);
double* arrPtr = mxGetPr(plhs[0]);
//Set alpha
for (size_t i=0; i<numNodes; i++)
{
arrPtr[i] = g->what_segment(i) == GraphType::SINK;
}
plhs[1] = mxCreateDoubleScalar(energy);
delete g;
return;
}
// Column generation and prediction
void minimize(map<int, double*>& nodeFeatures,
map<int,int>* nodeLabels,
map<int, double*>& edgeFeatures,
double* nodeTheta,
double* edgeTheta,
map<int,int>& res,
int DN,
int DE,
double lossPositive,
double lossNegative,
map<int, pair<int,int> >& indexEdge,
pair<int,double>* confidences,
int colgen,
map<int, double>* firstOrderResponses
)
{
int N = nodeFeatures.size();
int E = edgeFeatures.size();
typedef Graph<Cost,Cost,Cost> GraphType;
GraphType* g = new GraphType(N, E);
for (int i = 0; i < N; i ++)
g->add_node();
for (map<int, double*>::iterator it = nodeFeatures.begin(); it != nodeFeatures.end(); it ++)
{
Cost c = inner_product(it->second, nodeTheta, DN);
if (confidences)
{
confidences[it->first].first = NEGATIVE;
if (firstOrderResponses)
confidences[it->first].second = firstOrderResponses->at(it->first);
else
confidences[it->first].second = c;
}
if (nodeLabels->at(it->first) == EVIDENCE_NEGATIVE) c = -1000;
if (nodeLabels->at(it->first) == EVIDENCE_POSITIVE) c = 1000;
double l0 = 0;
double l1 = 0;
if (colgen)
{
l0 = loss1(nodeLabels->at(it->first), NEGATIVE, lossPositive, lossNegative, LOSS);
l1 = loss1(nodeLabels->at(it->first), POSITIVE, lossPositive, lossNegative, LOSS);
}
setNodeCost(g, it->first, c - l0, -c - l1);
if (DE == 0)
{
if (c - l0 <= -c - l1)
res[it->first] = NEGATIVE;
else
res[it->first] = POSITIVE;
if (nodeLabels->at(it->first) == EVIDENCE_NEGATIVE)
res[it->first] = EVIDENCE_NEGATIVE;
if (nodeLabels->at(it->first) == EVIDENCE_POSITIVE)
res[it->first] = EVIDENCE_POSITIVE;
}
}
if (not DE)
{
delete g;
return;
}
Cost* innerProducts00 = new Cost [E];
#pragma omp parallel for
for (int i = 0; i < E; i ++)
{
innerProducts00[i] = inner_product(edgeFeatures[i], edgeTheta, DE);
}
for (map<int, double*>::iterator it = edgeFeatures.begin(); it != edgeFeatures.end(); it ++)
{
Cost c00 = innerProducts00[it->first];
pair<int,int> edge = indexEdge[it->first];
setEdgeCost(g, edge.first, edge.second, -c00, 0, 0, -c00);
}
delete [] innerProducts00;
g->maxflow();
for (int i = 0; i < N; i ++)
{
if (g->what_segment(i) == GraphType::SOURCE)
res[i] = NEGATIVE;
else
res[i] = POSITIVE;
if (nodeLabels->at(i) == EVIDENCE_POSITIVE)
{
if (res[i] != POSITIVE)
printf("Label for node %d should be positive\n", i);
res[i] = EVIDENCE_POSITIVE;
}
if (nodeLabels->at(i) == EVIDENCE_NEGATIVE)
{
if (res[i] != NEGATIVE)
printf("Label for node %d should be negative\n", i);
res[i] = EVIDENCE_NEGATIVE;
}
if (confidences)
confidences[i].first = res[i];
}
delete g;
}
void mexFunction(int nOut, mxArray *pOut[], int nIn, const mxArray *pIn[]) {
clock_t mexBegin = tic();
const char *usage = "[energy, xmap, misc] = submodularMAPFull_mex(theta, pW, pots).\n"
" Solve MAP problem with overcomplete parameterization.\n"
" theta is nNodes x 2, first column is 0 potential, second is 1.\n"
" W is nNodes x nNodes sparse *indexing* a potential in pots, 1-based.\n"
" pots is nPots cell array, each 2x2.\n";
if (nIn != 3) {
mexErrMsgIdAndTxt("submodularMAP_mex:args", usage);
}
/////////////////////////////////////////////////
// Extract arguments and outputs
/////////////////////////////////////////////////
Mat<double> theta (pIn[0]);
cscMatrix W = extractCSC(pIn[1]);
CellMat<Mat<double> > pots(pIn[2]);
int nNodes = theta.M;
mwSize nEdges = W.nzMax / 2; // symmetric mat
int nPots = pots.length;
auto misc = StructMat(1, 1, {"maxFlow", "mexTotTime"});
pOut[oMisc] = misc;
std::vector<int> x(nNodes);
typedef Graph<double,double,double> GraphType;
GraphType *g = new GraphType(nNodes, nEdges + 2 * nNodes);
g->add_node(nNodes);
// Pairwise are normal (bidirectional) edges.
mwIndex i, off;
// Potential idx
int pidx;
double w;
// Use Kolmogorov's submodular construction, Kolmogorov04 pp. 151
// is there a cache-friendlier way to write this? does it even matter?
std::vector<double> sAug(nNodes);
std::vector<double> tAug(nNodes);
for (mwIndex j = 0; j < nNodes; j++) {
for (mwIndex wIdx = W.jc[j]; wIdx < W.jc[j+1]; wIdx++) {
// Upper triangular only
i = W.ir[wIdx];
// some dirty trickery since we represent an int as a double.
if (j > i) {
if (pidx >= 0 && pidx < nPots) {
pidx = W.pr[wIdx] - 1;
// We may have weird numerical issues.
if (pidx >= 0 && pidx < nPots) {
sAug[i] += pots[pidx](1,0) - pots[pidx](0,0); // C - A
tAug[j] += pots[pidx](1,0) - pots[pidx](1,1); // C - D
w = pots[pidx](0,1) + pots[pidx](1,0) - pots[pidx](0,0) - pots[pidx](1,1); // B + C - A - D
g->add_edge(i, j, w, 0);
mexPrintf("%d->%d = %g\n", i, j, w);
}
}
}
}
}
double dTheta;
double s;
double t;
for (int j = 0; j < nNodes; j++) {
dTheta = theta(j,1) - theta(j,0);
s = MAX(0, dTheta) + sAug[j];
t = MAX(0, -dTheta) + tAug[j];
g->add_tweights(j, s, t);
mexPrintf("s->%d = %g\t; %d->t = %g\t; sAug = %g\t; tAug = %g\n", j, s, j, t, sAug[j], tAug[j]);
}
double maxFlow = g->maxflow();
for (int i = 0; i < nNodes; i++) {
x[i] = g->what_segment(i) == GraphType::SINK;
//mexPrintf("x[%d] = %d, ws = %d\n", i, x[i], g->what_segment(i));
}
misc.set("maxFlow", scalar<double>(maxFlow));
// Compute final energies
double energy = 0.0;
for (mwIndex j = 0; j < nNodes; j++) {
energy += theta(j,x[j]);
for (mwIndex wIdx = W.jc[j]; wIdx < W.jc[j+1]; wIdx++) {
// Upper triangular only
i = W.ir[wIdx];
if (j > i) {
if (pidx >= 0 && pidx < nPots) {
pidx = W.pr[wIdx] - 1;
energy += pots[pidx](x[i],x[j]);
}
}
}
}
pOut[oX] = Mat<int>(x);
pOut[oEnergy] = scalar<double>(energy);
delete g;
misc.set("mexTotTime", scalar<double>(toc(mexBegin)));
}
int main(int argc,char* argv[]){
if (argc < 2){
cout << "missing file path";
return 1;
}
ifstream ifs (argv[1]);
int index = 0;
string node = "";
int number_of_nodes = 0;
int number_of_edges = 0;
ifs >> number_of_nodes >> number_of_edges;
typedef Graph<double,double,double> GraphType;
GraphType *g = new GraphType(number_of_nodes,number_of_edges);
for (int i=0;i<number_of_nodes;i++)
g->add_node();
ifs >> node;
while (node != "=="){
int node_index = 0;
double w1,w2;
ifs >> w1 >> w2;
if (nodes.count(node) == 0){
nodes[node] = index;
inverse_nodes[index] = node;
index++;
}
node_index = nodes[node];
g -> add_tweights( node_index, w1, w2 );
ifs >> node;
}
while (ifs >> node){
string n1,n2;
double w;
n1 = node;
ifs >> n2;
ifs >> w;
if (nodes.count(n1) == 0){
nodes[n1] = index;
inverse_nodes[index] = n1;
index++;
}
if (nodes.count(n2) == 0){
nodes[n2] = index;
inverse_nodes[index] = n2;
index++;
}
g -> add_edge(nodes[n1] , nodes[n2], w,0);
}
ifs.close();
double flow = g -> maxflow();
//printf("Flow = %d\n", flow);
//printf("Minimum cut:\n");
for (int i=0;i<number_of_nodes;i++){
if (g->what_segment(i) == GraphType::SOURCE)
cout << inverse_nodes[i] << " " << "src\n";
else
cout << inverse_nodes[i] << " " << "snk\n";
}
delete g;
return 0;
}
// =============================================================================
int main(int argc, char** argv) {
// Check arguments
if (argc < 3) {
std::cerr << "Usage: " << argv[0] << " NODES_FILE TETS_FILE\n";
exit(1);
}
// Construct an empty graph
GraphType graph;
// Create a nodes_file from the first input argument
std::ifstream nodes_file(argv[1]);
// Interpret each line of the nodes_file as a 3D Point and add to the Graph
Point p;
std::vector<typename GraphType::node_type> nodes;
while (CME212::getline_parsed(nodes_file, p))
nodes.push_back(graph.add_node(p));
// Create a tets_file from the second input argument
std::ifstream tets_file(argv[2]);
// Interpret each line of the tets_file as four ints which refer to nodes
std::array<int,4> t;
while (CME212::getline_parsed(tets_file, t)) {
graph.add_edge(nodes[t[0]], nodes[t[1]]);
graph.add_edge(nodes[t[0]], nodes[t[2]]);
#if 1
// Diagonal edges
graph.add_edge(nodes[t[0]], nodes[t[3]]);
graph.add_edge(nodes[t[1]], nodes[t[2]]);
#endif
graph.add_edge(nodes[t[1]], nodes[t[3]]);
graph.add_edge(nodes[t[2]], nodes[t[3]]);
}
// Set initial velocity and mass
for (GraphType::NodeIterator it = graph.node_begin(); it != graph.node_end(); ++it) {
Node n = *it;
n.value().vel = Point(0,0,0); // Initial velocity == 0
n.value().mass = 1.0 / graph.num_nodes(); // graph has total mass == 1, constant density
}
// Set rest length for all of the Edges to their initial length
for (GraphType::EdgeIterator ei = graph.edge_begin(); ei != graph.edge_end(); ++ei ) {
(*ei).value().L = (*ei).length();
}
// Print out the stats
std::cout << graph.num_nodes() << " " << graph.num_edges() << std::endl;
// Launch the SDLViewer
CME212::SDLViewer viewer;
auto node_map = viewer.empty_node_map(graph);
viewer.launch();
viewer.add_nodes(graph.node_begin(), graph.node_end(), node_map);
viewer.add_edges(graph.edge_begin(), graph.edge_end(), node_map);
viewer.center_view();
// Begin the mass-spring simulation
double dt = 0.001;
double t_start = 0;
double t_end = 5.0;
for (double t = t_start; t < t_end; t += dt) {
// P1 ---------------------------------------------------------------------
// symp_euler_step(graph, t, dt, Problem1Force());
// P3 ----------------------------------------------------------------------
//symp_euler_step(graph, t, dt, cf);
// Create individual forces
GravityForce g(grav);
MassSpringForce msf(100);
DampingForce d(1.0 / graph.num_nodes());
// Combine the individual forces
auto cf = make_combined_force(g, msf, d);
// P4 ----------------------------------------------------------------------
// Create individual constraints
HPlane hp(-0.75);
Sphere sp(0.15, Point(0.5,0.5,-0.5));
SphereRemove sr(0.15, Point(0.5,0.5,-0.5));
// Combined individual constraints
// P4.1
// auto c = make_combined_constraint(hp, FixedConstraint());
// P4.2
// auto c = make_combined_constraint(sp, FixedConstraint());
// P4.3
auto c = make_combined_constraint(sr, FixedConstraint());
// Mixed constraints
// auto c = make_combined_constraint(hp, sr, FixedConstraint());
// auto c = make_combined_constraint(hp, sp, FixedConstraint());
symp_euler_step(graph, t, dt, cf, c);
viewer.clear();
node_map.clear();
viewer.add_nodes(graph.node_begin(), graph.node_end(), node_map);
viewer.add_edges(graph.edge_begin(), graph.edge_end(), node_map);
// Update viewer with nodes' new positions
viewer.add_nodes(graph.node_begin(), graph.node_end(), node_map);
viewer.set_label(t);
// These lines slow down the animation for small graphs, like grid0_*.
// Feel free to remove them or tweak the constants.
if (graph.size() < 100)
CME212::sleep(0.0001);
}
return 0;
}
void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[])
{
//printf("1\n");
//declare variables
mxArray *D, *PairW, *tU, *numPixels, *alpha, *Kin;
const mwSize *dimsPairW, *dimsD, *dimsTu;
double *alphaPtr, *DPtr, *PairWPtr, *tUPtr, *numPixelsPtr, *KPtr;
int dimxPairW, dimyPairW, dimzPairW, dimxD, dimyD, dimxTu, dimyTu;
int i,j;
//associate inputs
//printf("2\n");
D = mxDuplicateArray(prhs[0]);
PairW = mxDuplicateArray(prhs[1]);
tU = mxDuplicateArray(prhs[2]);
numPixels = mxDuplicateArray(prhs[3]);
Kin = mxDuplicateArray(prhs[4]);
//figure out dimensions
//printf("3\n");
dimsPairW = mxGetDimensions(prhs[1]);
dimyPairW = (int)dimsPairW[0]; dimxPairW = (int)dimsPairW[1]; dimzPairW = (int)dimsPairW[2];
dimsD = mxGetDimensions(prhs[0]);
dimyD = (int)dimsD[0]; dimxD = (int)dimsD[1];
//printf("4\n");
//associate outputs
alpha = plhs[0] = mxCreateDoubleMatrix(1,dimxPairW,mxREAL);
//printf("5\n");
//associate pointers
alphaPtr = mxGetPr(alpha);
DPtr = mxGetPr(D);
tUPtr = mxGetPr(tU);
PairWPtr = mxGetPr(PairW);
numPixelsPtr = mxGetPr(numPixels);
KPtr = mxGetPr(Kin);
double K = (double)KPtr[0];
/*
dimsTu = mxGetDimensions(prhs[2]);
dimyTu = (int)dimsTu[0];
dimxTu = (int)dimsTu[1];
printf("6 dimxTu=%d, dimyTu=%d\n", dimxTu, dimyTu);
*/
typedef Graph<double,double,double> GraphType;
int numNodes=(int)numPixelsPtr[0];
GraphType *g = new GraphType(/*estimated # of nodes*/ numNodes, /*estimated # of edges*/ 10*numNodes);
g->add_node(numNodes);
for (i=0;i<dimxPairW;i++)
{
/*
int currTU = (int)tUPtr[i]-1;
int currAlpha = (int)alphaInPtr[currTU];
if (currAlpha == 0)
g->add_tweights(currTU,DPtr[currTU],0);
else if (currAlpha == 1)
g->add_tweights(currTU,0,DPtr[currTU]);
else {
printf("ERROR: currAlpha=%d\n", currAlpha);
break;
} */
// printf("7: i=%d, p=%d\n", i, (int)tUPtr[i]-1);
int curr_tU = (int)tUPtr[i]-1;
g->add_tweights(curr_tU,DPtr[2*i+1],DPtr[2*i]);
for (j=0;j<dimyPairW;j++)
{
int xy = j+i*dimyPairW;
int matSize = dimxPairW*dimyPairW;
if (PairWPtr[xy]==0) continue;
else {
//printf("8: j=%d, p1=%d p2=%d\n", j, (int)tUPtr[i]-1,(int)PairWPtr[matSize + xy]-1);
g->add_edge(curr_tU,(int)PairWPtr[matSize + xy]-1,PairWPtr[xy],PairWPtr[xy]);
}
}
}
double flow = g->maxflow();
printf("Flow = %f\n", flow);
for (i=0;i<dimxPairW;i++)
{
//printf("9\n");
if (g->what_segment(i) == GraphType::SOURCE) alphaPtr[i]=0;
else if (g->what_segment(i) == GraphType::SINK) alphaPtr[i] = 1;
else {
printf("ERROR: g->what_segment(i) is neither source nor sink\n");
}
}
delete g;
return;
}
void mexFunction(int nlhs, /* number of expected outputs */
mxArray *plhs[], /* mxArray output pointer array */
int nrhs, /* number of inputs */
const mxArray *prhs[] /* mxArray input pointer array */)
{
// input checks
if (nrhs != 2 || !mxIsSparse(prhs[0]) || !mxIsSparse(prhs[1]))
{
mexErrMsgTxt ("USAGE: [flow,labels] = maxflowmex(A,T)");
}
const mxArray *A = prhs[0];
const mxArray *T = prhs[1];
if (mxIsComplex(A) || mxIsComplex(T))
{
mexErrMsgTxt ("Complex entries are not supported!");
}
// fetch its dimensions
// actually, we must have m=n
mwSize m = mxGetM(A);
mwSize n = mxGetN(A);
mwSize nzmax = mxGetNzmax(A);
if (m != n)
{
mexErrMsgTxt ("Matrix A should be square!");
}
if (n != mxGetM(T) || mxGetN(T) != 2)
{
mexErrMsgTxt ("T should be of size Nx2");
}
// sparse matrices have a different storage convention from that of full matrices in MATLAB.
// The parameters pr and pi are still arrays of double-precision numbers, but these arrays
// contain only nonzero data elements. There are three additional parameters: nzmax, ir, and jc.
// nzmax - is an integer that contains the length of ir, pr, and, if it exists, pi. It is the maximum
// possible number of nonzero elements in the sparse matrix.
// ir - points to an integer array of length nzmax containing the row indices of the corresponding
// elements in pr and pi.
// jc - points to an integer array of length n+1, where n is the number of columns in the sparse matrix.
// The jc array contains column index information. If the jth column of the sparse matrix has any nonzero
// elements, jc[j] is the index in ir and pr (and pi if it exists) of the first nonzero element in the jth
// column, and jc[j+1] - 1 is the index of the last nonzero element in that column. For the jth column of
// the sparse matrix, jc[j] is the total number of nonzero elements in all preceding columns. The last
// element of the jc array, jc[n], is equal to nnz, the number of nonzero elements in the entire sparse matrix.
// If nnz is less than nzmax, more nonzero entries can be inserted into the array without allocating additional
// storage.
double *pr = mxGetPr(A);
mwIndex *ir = mxGetIr(A);
mwIndex *jc = mxGetJc(A);
// create graph
typedef Graph<float,float,float> GraphType;
// estimations for number of nodes and edges - we know these exactly!
GraphType *g = new GraphType(/*estimated # of nodes*/ n, /*estimated # of edges*/ jc[n]);
// add the nodes
// NOTE: their indices are 0-based
g->add_node(n);
// traverse the adjacency matrix and add n-links
unsigned int i, j, k;
float v;
for (j = 0; j < n; j++)
{
// this is a simple check whether there are non zero
// entries in the j'th column
if (jc[j] == jc[j+1])
{
continue; // nothing in this column
}
for (k = jc[j]; k <= jc[j+1]-1; k++)
{
i = ir[k];
v = (float)pr[k];
//mexPrintf("non zero entry: (%d,%d) = %.2f\n", i+1, j+1, v);
g->add_edge(i, j, v, 0.0f);
}
}
// traverse the terminal matrix and add t-links
pr = mxGetPr(T);
ir = mxGetIr(T);
jc = mxGetJc(T);
for (j = 0; j <= 1; j++)
{
if (jc[j] == jc[j+1])
{
continue;
}
for (k = jc[j]; k <= jc[j+1]-1; k++)
{
i = ir[k];
v = (float)pr[k];
if (j == 0) // source weight
{
g->add_tweights(i, v, 0.0f);
}
else if (j == 1) // sink weight
{
g->add_tweights(i, 0.0f, v);
}
}
}
plhs[0] = mxCreateDoubleMatrix(1,1,mxREAL);
double* flow = mxGetPr(plhs[0]);
*flow = g->maxflow();
// figure out segmentation
plhs[1] = mxCreateNumericMatrix(n, 1, mxINT32_CLASS, mxREAL);
int* labels = (int*)mxGetData(plhs[1]);
for (i = 0; i < n; i++)
{
labels[i] = g->what_segment(i);
}
// cleanup
delete g;
}
//--> finds the most optimal path across the polar Edge map!
void findTheCut(double* imgEdge_in, const int width_in, const int height_in, unsigned char* fgMap_out)
{
// Global static variable get assigned!
width = width_in;
height = height_in;
//Create a Graph with number of nodes
typedef Graph<float,float,float> GraphType;
GraphType *g = new GraphType(/*estimated # of nodes*/ width*height, /*estimated # of edges*/ 2*width*height);
//Create Node Id array
GraphType::node_id** node=new GraphType::node_id*[height];
for(int i = 0; i < height; i++){
node[i]=new GraphType::node_id[width];
for(int j = 0; j < width; j++){
node[i][j] = g->add_node();
}
}
//Set the data costs terms for each pixel and each label
for(int i = 0; i < height; i++){
for(int j = 0; j < width; j++){
if ( j==0 ){
g->add_tweights(node[i][j],100.0,0);
}
else if (j > width-10){
g->add_tweights(node[i][j],0,100.0);
}
else{
g->add_tweights(node[i][j],0,0);
}
}
}
// Set the neighboring pixels!
for(int i = 0; i < height; i++){
for(int j = 0; j < width; j++){
int pixelQ;
for(int k = 0; k < 2; k=k+1)
for(int l = 0; l < 2; l=l+1){
if (k==l)
continue;
else if (i+k == height && j+l >= 0 && j+l < width){
pixelQ = (j+l); // nodes in the first row
double cost;
//printf("\n pair (%d,%d )",pixelP,pixelQ);
FindB(imgEdge_in, i, j, 0, j+l, &cost); // cost of assigning different labels
g->add_edge(node[i][j],node[0][j+l],(float)cost,(float)cost);
}
else if (i+k >= 0 && i+k < height && j+l >= 0 && j+l < width){
pixelQ = (i+k)*width+(j+l);
double cost;
//printf("\n pair (%d,%d )",pixelP,pixelQ);
FindB(imgEdge_in,i,j,i+k,j+l, &cost); // cost of assigning different labels
g->add_edge(node[i][j],node[i+k][j+l],(float)cost,(float)cost);
}
}
}
}
g->maxflow(); // calculate maxFlow
// label "0" is the source, also foreground!
for(int i = 0; i < height; i++)
for(int j = 0; j < width; j++)
*(fgMap_out + width*i + j) = g->what_segment(node[i][j]) == 0 ? 255 : 0;
//DONE. Now, release the memory!
for(int i=0;i<height;i++)
delete []node[i];
delete []node;
delete g;
}
